Sfur002536.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sogatella furcifera
Gene Symbol
-
Assembly
GCA_014356515.1
Location
chr5:6844182-6874238[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.00018 0.0094 16.6 5.3 1 23 320 342 320 343 0.96
2 25 0.061 3.1 8.6 9.4 1 23 378 400 378 400 0.97
3 25 0.00058 0.03 15.0 0.6 1 23 406 428 406 428 0.98
4 25 0.0033 0.17 12.6 0.0 1 23 434 456 434 456 0.98
5 25 0.014 0.74 10.6 0.7 1 23 462 484 462 484 0.98
6 25 0.0096 0.49 11.2 2.5 1 23 490 512 490 512 0.98
7 25 0.0016 0.083 13.6 0.4 1 23 518 541 518 541 0.97
8 25 0.00025 0.013 16.1 0.8 1 23 547 569 547 569 0.92
9 25 0.0068 0.35 11.6 7.5 1 23 593 615 593 616 0.96
10 25 0.00016 0.0084 16.7 0.4 3 23 649 669 648 669 0.98
11 25 0.00041 0.021 15.5 1.4 1 23 675 697 675 697 0.98
12 25 0.00029 0.015 15.9 1.9 1 23 703 725 703 725 0.98
13 25 0.00011 0.0055 17.3 0.1 1 23 731 753 731 753 0.98
14 25 0.0067 0.35 11.7 7.3 1 23 811 833 811 834 0.96
15 25 6.5e-05 0.0034 18.0 0.4 2 23 867 888 866 888 0.96
16 25 0.00039 0.02 15.5 1.5 1 23 894 916 894 916 0.98
17 25 0.01 0.54 11.0 0.5 1 23 922 945 922 945 0.97
18 25 0.018 0.91 10.3 3.9 1 23 951 974 951 975 0.97
19 25 0.0018 0.091 13.5 7.1 1 23 1021 1043 1021 1044 0.96
20 25 0.00026 0.014 16.1 1.9 2 23 1077 1098 1076 1098 0.97
21 25 0.017 0.87 10.4 0.4 1 23 1104 1126 1104 1126 0.97
22 25 0.0048 0.25 12.1 2.3 1 23 1132 1154 1132 1154 0.98
23 25 0.0028 0.15 12.8 1.9 1 23 1160 1182 1160 1182 0.98
24 25 0.00018 0.0092 16.6 0.6 1 23 1188 1210 1188 1210 0.98
25 25 0.00067 0.034 14.8 2.9 1 23 1216 1239 1216 1239 0.98

Sequence Information

Coding Sequence
ATGATACTATCAGCTGCATCACCAGTTGCAACCGCTGTTGAAGAACGTAGTAGCAGCACACTGAACCTGAGTGCATCGGGTGCATTCAGTGCACCGGGAAGTGCATTCGGCAGTGCATCTAGTGCACGTCGACGGGTGCCCAGCCTGCCCTCCTCACCGCTCACCTATGCAATGCAAGACTGGAGGGGAGGAGGAGGAGGAGTGGGAGGAGGAGCCACTTTAGAAACGCCAATTCTGGATATTCTCGATCCCAGCATTTATTCTCCGGCACTGGCGGCCACCACCTATGACTATCATGCTGCTCAACTGGAACGTTTTCTGGAAGAGTATCGCAGCCTCCAAGAGCAGCTGTCAAAAATGAAGGAGACCTGCGAGAATATGCGCCTGGGGGGTATGGGCGGCAGCACCAGCAAAGATTCACATTTTGAAAATTCGCGCCTCACCGATCCCCTCCAGGCGCCGGTCGACGACACGCCGCGCTCCATTTTGAAAAACAAAACCAATAAGAATGGCGCCAGCCTGCCCCAGAATGCATCAGATCAGTTGGACATTGACAGCTGCTTGCAGGGGAGTAATAATGAGTTTGAATTCGTTGAAGTCAAGGTGGAGGCCCCTGAAGAATTGGATGTGGACCAGGATCAGTTGGACTCTGGCTGCTCCTTGCCGGAGAGTAATAATGAAGTTGAATTCTTTGAAATGAAAATGGAGACCCCTGAAGAATTGGATGTTGAACAGATTGAACCCTATCCTGTTAGCGAAGTGTGCAATGAGGGTGAGCCCTTCATCAGAGATCCACTATCCACCATGGAAGAAACAGAAGAACATCTACAAGATAACCGAGACCCATTGTCGAGTGATTTACACATTCTTGGGCATTCTTCAGCTGAGCAAAGTTGGAATTCAGTTTCAGCAGAAATTGACAATTTGGAGCCCGAGAAGCCAGCTTCCTCTCCAGTCTACAGCTGCCCAAAGTGTGAGTACAAGTGTACAAGACTCAGTGTTCTCAACAAACACATCAGAACACATCATGTGGTGGCAGCTGAATCAAGTGGAAGTGGAGTTGATCAAAATAGGGGGAGAGAACAGTCCTCAATTGAATCTCATCCCATATCGAGCATTGGAGGGAACCTATTCAGTTGTAAACTTTGTAATTTTAAGACAAATCATCAACATAATTTGAAAAAACATCAATTTAGGCATACTGGAGTGAAACCTTATAGCTGTGGGTTATGTGACTATAGAGCAGTTGAACAAAGTTACCTGACAAGACACTTACGTAAGCATGCTGGAGAAAAACCTTTTATTTGTGAGTTTTGTGGGTATAGAGTAGCTGAAGTGGGGAATCTAAGAGTACATCTCAGAATTCATACCGGAGAAAAACCTTTTAGCTGTGAGCTATGTGATTTCAAATCAAATCAATCAAATCCTTTAAAAGAACATATGATAAAGCATACTGGAGAAAAACCTTTCAGCTGTGAGCTATGTGAATTCAAAACAAATACATCATTCAGTTTAAGAGCACATAAGAGAAGGCATACAGGCGATAAACGTTTTAGTTGTGAGTTATGTGAATATAAAACAATTGAATCAAGTAGTTTGAAAGTGCATATAAGAATTAAACATATGGGTGAGAAATCTTTTAGCTGTGACTTATGTGAAGTCAAATCATTTTCATTGTCTAATTTAAAAGTACATATGAGAACACATACAGGAGAAAAACCATATAGCTGTGAGTTCTGTGAATATAAATCAACTCAATACACTTCCTCCCCATTCTTCAGGTGCACTCGATGCTATTACAGGTGTACAACACTCACCGATCTCAACCAACACATCAGAACACATCATGTGGCAGCTGAATGGAGTGAAAAAGGTGTTAGATTGACAGAACAATCAACATCAGAACATCTTCCAAGATCAAACAAAGAAATGAAGCTTCCCATTTGTGAAATTTGTGGTTATAAAACGAAAAAGCCTAATGATTTGAGAGTGCATTTGAGAAAGCATACAGGAGAAAGGCCTTTTAGCTGTGAGCTATGTGATTTCAAATCAATTACATCAAGTTATTTAAAAGTTCATTTAAGAAAGCATACAGGGGAGAAACCTTTTAGCTGTAAGTTATGTGAATATAAAACAAATGAATCAAGTAGTTTGAAAGTACATATGAGAAGGCATACAGGGGAGAAACCTTTTATCTGTGACTTATGTGGAGTCAGAGCAGTTTCATTGTCTAATTTAAAAGTACATATGAGAAAGCATACAGGAGAAAAACCATATAGCTGTGAGTTCTGTGAATATAAATCATCTCAATTACATGAGGCAAAGCCATTGTCAGATGATTTTCCACCTCTCAAACACATAGCTGACAATGATGATGACCAAAGTGGAGATACAGCTGTTGGTGGTTCCTCTCCAGCTTCCTCTCAATTCTTCAGCTGCACTCAATGCGATTACAAGTGTACAAGATTCACTGTTCTCAACAAACACATTAGAACACATCATGTGGCAGCTAAATCGAGTGAAAACTGTGTTAATAAGACAACAAAACAATCAACATCAAAACATCTCCCCACATCAAGCAAAAAAATAAAGCTTCTCATTTGTGAAATTTGTGATTATAAGACGAAAAGGCCTAATGATTTGAGAGTGCATTTGAGAAAGCATACAGGAGAAAAGCCTTTCAGCTGTGAGATATGTGATTTCAAAGCAATTACATTAAGTCATTTGAAAGTTCATTTAAGAAAGCATACAGGGGAGAAACCTTTTAGCTGTGAGCTATGTGATTTCAAAGCAACTGTATCAGCCCATTTAAAAGAACATATTATGGTGCAGCATACAGGTGAGAAACCTTTTAGCTGTGAGTTATGTGAATACAAAACATATAGATCAGGTCGTTTGAAAGACCATATGAGAAGGAAGCATCATTTATTGAAGAATCCTCTCAACCAAGGACAGGTACATCAGGGAGGCGTTTGGACACTCCCCTCCCTGTCAATTCAAGTTCTTGGTACTCAGTCACTGAGCCAATTTGATGTTGAGCAGCCGGCTTCCTCTCCATCATTCAGCTGCACTCAATGCGATCACAAGTGTACAACCCTCACTGATCTGAACATTCACATCAGAACACATCATGTGGCAACTGAATCAAGTGGGGAAGGTGCTAATAGGACGACAAAACAATCATCATCACAACATCTTCCTACATCAAACATAGAAATAAATCTTCTCAGTTGTGAACTTTGTGATTATAAGACAAAATATCAAAATAATCTGAGAAATCATTTAAGAAGGCATGTTGGAGGAAAACCTTTTATTTGTGAGTTTTGTGCATATAGAGCATCTAAATTAGCAAATTTAAAAGTGCATTTAAAAACGCATACAGGAGAAAAGCCTTTCAGCTGTGAGCTATGTGATTTCAAAGCAATTACATCAAGTCATTTAAAAGTGCATTCAAGAAAGCATACAGGAGAGAAACCTTTTAGTTGTGAGCTATGTGATTTCAAAGCAACTGTATCAACTCATTTAAAAGTACATATGAGACAGCATACAGGTGAGAAACCTTATAGCTGTGAGCTATGTGATTTCAAAGGAATTACATCAAGTCAATTAAAAGTACATATGAGACAGCATACAGGTGAGAAACCTTTTAGTTGTGAGCTATGTGAATACAAAACAATTAGATCAGGTCATTTGAAACTTCATATGAGAAGAAAGCATACATTGAAGAATCCTCAACATTGA
Protein Sequence
MILSAASPVATAVEERSSSTLNLSASGAFSAPGSAFGSASSARRRVPSLPSSPLTYAMQDWRGGGGGVGGGATLETPILDILDPSIYSPALAATTYDYHAAQLERFLEEYRSLQEQLSKMKETCENMRLGGMGGSTSKDSHFENSRLTDPLQAPVDDTPRSILKNKTNKNGASLPQNASDQLDIDSCLQGSNNEFEFVEVKVEAPEELDVDQDQLDSGCSLPESNNEVEFFEMKMETPEELDVEQIEPYPVSEVCNEGEPFIRDPLSTMEETEEHLQDNRDPLSSDLHILGHSSAEQSWNSVSAEIDNLEPEKPASSPVYSCPKCEYKCTRLSVLNKHIRTHHVVAAESSGSGVDQNRGREQSSIESHPISSIGGNLFSCKLCNFKTNHQHNLKKHQFRHTGVKPYSCGLCDYRAVEQSYLTRHLRKHAGEKPFICEFCGYRVAEVGNLRVHLRIHTGEKPFSCELCDFKSNQSNPLKEHMIKHTGEKPFSCELCEFKTNTSFSLRAHKRRHTGDKRFSCELCEYKTIESSSLKVHIRIKHMGEKSFSCDLCEVKSFSLSNLKVHMRTHTGEKPYSCEFCEYKSTQYTSSPFFRCTRCYYRCTTLTDLNQHIRTHHVAAEWSEKGVRLTEQSTSEHLPRSNKEMKLPICEICGYKTKKPNDLRVHLRKHTGERPFSCELCDFKSITSSYLKVHLRKHTGEKPFSCKLCEYKTNESSSLKVHMRRHTGEKPFICDLCGVRAVSLSNLKVHMRKHTGEKPYSCEFCEYKSSQLHEAKPLSDDFPPLKHIADNDDDQSGDTAVGGSSPASSQFFSCTQCDYKCTRFTVLNKHIRTHHVAAKSSENCVNKTTKQSTSKHLPTSSKKIKLLICEICDYKTKRPNDLRVHLRKHTGEKPFSCEICDFKAITLSHLKVHLRKHTGEKPFSCELCDFKATVSAHLKEHIMVQHTGEKPFSCELCEYKTYRSGRLKDHMRRKHHLLKNPLNQGQVHQGGVWTLPSLSIQVLGTQSLSQFDVEQPASSPSFSCTQCDHKCTTLTDLNIHIRTHHVATESSGEGANRTTKQSSSQHLPTSNIEINLLSCELCDYKTKYQNNLRNHLRRHVGGKPFICEFCAYRASKLANLKVHLKTHTGEKPFSCELCDFKAITSSHLKVHSRKHTGEKPFSCELCDFKATVSTHLKVHMRQHTGEKPYSCELCDFKGITSSQLKVHMRQHTGEKPFSCELCEYKTIRSGHLKLHMRRKHTLKNPQH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-