Sfur000981.1
Basic Information
- Insect
- Sogatella furcifera
- Gene Symbol
- -
- Assembly
- GCA_014356515.1
- Location
- chr8:22921006-22937137[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00016 0.0083 16.7 2.7 1 23 439 461 439 461 0.97 2 16 0.0017 0.087 13.5 4.6 1 21 485 505 485 507 0.93 3 16 1.4e-06 7.2e-05 23.2 3.0 1 23 513 535 513 535 0.98 4 16 6.7e-05 0.0035 17.9 6.3 1 23 541 563 541 563 0.96 5 16 5.1e-06 0.00026 21.5 4.2 1 23 569 591 569 591 0.97 6 16 1.5e-07 7.6e-06 26.3 2.7 1 23 597 619 597 619 0.98 7 16 0.0001 0.0054 17.3 6.7 1 23 625 647 625 647 0.97 8 16 2.5e-05 0.0013 19.3 6.8 1 23 653 675 653 675 0.98 9 16 7.8e-06 0.0004 20.9 4.6 1 23 681 703 681 703 0.97 10 16 3.5e-05 0.0018 18.8 7.5 1 23 709 731 709 731 0.98 11 16 2.5e-05 0.0013 19.3 10.3 1 23 737 759 737 759 0.98 12 16 4.7e-06 0.00024 21.6 2.4 1 23 765 787 765 787 0.98 13 16 0.00041 0.021 15.5 1.1 1 23 793 815 793 815 0.98 14 16 0.00024 0.012 16.2 1.4 1 23 821 843 821 843 0.98 15 16 0.0043 0.22 12.3 4.6 1 23 853 875 853 875 0.98 16 16 3.8e-05 0.002 18.7 1.7 2 23 881 903 880 903 0.97
Sequence Information
- Coding Sequence
- ATGAATCCCGATCAGCAGCAGTCTACAATGGCTTCCAACGGCCTTCCTTCACATTCTCAGGCTGAGGTTTGTCTGAGCACCCAGCAACGGGATGAACAGGCAGCAGCTGTGAATGCTGTGACATTGTCGAATGTAGCCAAATACTGGGTGCTTACTCAGACCCTGTTCCCTGGTCATGTACCCCAGGTGAGGACACTACCCTGCTCAACTTTACCGGTTTCAGTGTATGGGCTACATGCTCCTAGACTGGAAAACGTGAAAGATCCACTGACTTCTGTCTGCTTGACTGGTGATTCTGTGGCCCTAGTTCAACACCAGGCTCAGATACCAGTAAACACGATTCCGGTGCCAGTGAGCAGTTCGGCTCTCCCCGCCCTCACCCCCGCGCCACACATAGTGGCTGTACCCCCCGCCATCACATCCACAAAGGAGGAGAAGTCAAGCGCTGTTGAACAGTGTAACAATACAGGACAACAGCAGGTGCATTGCCAGGTGCAATGCGACATGCCGATATTACAGCAACAGTTGACTTCGTCATCACCGGCCACCAGTACCACACAATCGGCAACGGTGCAGACACACGCGCAGGCACACGCACACGAACTGGCCATCTCCTTCACGCCCCAACAACGCCAGCAATTGCATGAACAGGTTGCGTTTGATGGAGGAGAATACCATGTGACACAAAACCGGTCCCAACCAGATATGTTTACGGTTCTTCACCATCATACGATGGCACAACAGCATCAGCAGGACTCACAAGGGCAACAACAACATCAGAGACCAAATTCGGAAGCTGGAGGCGGCCGGCCCATGGAGCAGCAACAGCAGCAATTGCAGCTAGTGGTGGCGTCAGGCGATGTGGTCAACGGTTGCAATTCGGTCAAAATGGAGACCAAAGATATCAGGCCGCCGCTAGTGAATATGTCTGCGTTTCCTGGTCAAGATCCGTTGAAAATTCAACAACAGCATATGCAGCCGACACAGACGGTTGACTTCAGAGCAGTTGATGGCTCCATATTGAAGGTGAACGGAGATGTCGACCACAAAACCATACTTGCAACTACTGGATCAACGGACTTGTCTCAGAATATGTTCAAGGTGAACGTGGAAGAACTGCTAGCCTATCACGAGGTGTTTGGAAAGCTACAGGGTACCTCAGGCATACCGCTGACCACAGGCTCATTGCAAATGGCCACCACCACCACTACCACCACTACCAACACCACCGCCTCCGGCTCCTCAACGAAGCCAAACGAGGAGGGAGGAGGGAACCCGTCCCCTTCAGCGTCGCCCTCCCCTCCGCACACCTCCCATGTGTGCGATATGTGCGGCAAGAGCTTCCAGTATCGCTACCAGATGATTGTTCATAGGAGATATCACAGCGAAAAGAAACCGGCATTTGCCAATGGTAACGGCGAACTACAACCAAAGACAAACCCAAACAAGCCTCACGCCTGCAACGTATGCAGCAAAGCATTCGGCAGGAAAGAGCATCTAGAGAATCACCTACGGTGTCACTCCGGAGACACACCATACAAATGTCAATTCTGCGGCAAAAACTTCACCAGAAAAGAGCATCTGGTGAACCATATCAGCGTGCATACTGGAGAAACGCCCCATCGATGCAAAATTTGTAAAAAGTCGTTCACGCGCAAAGAGCACTACACAAACCACGTGTTATGGCATACGGGGGAAACCCCACATATATGCACCATATGTGGCAAGAAGTACACTAGAAAAGAGCATCTGGTAAGTCACTTGAGGTCACATACTAACGATACACCGTTCCGGTGCGACATATGTGGGAAATCATTCACCAGAAAGGAGCACTTCACCAACCACATAATGTGGCACACTGGAGAGACTCCACATCGATGTGATTTCTGTTCAAAAACTTTCACACGTAAAGAACATCTATTGAATCATGTCAGGCAACACACTAATGAATCTCCACATCGTTGCTCGTACTGTACGAAAACCTTCACAAGAAAAGAACACCTAGTTAATCATGTAAGACAACATACAGGGGAAACACCTTTCCATTGTCAGTACTGTCCCAAGGCGTTCACAAGAAAAGATCATCTGGTGAATCATGTTAGGCAGCATACTGGAGAGTCCCCTCACAAGTGCATGTATTGTACGAAGAGTTTCACACGTAAGGAACACCTAACAAATCATGTGAGACAACACACTGGTGAATCGCCTCATAGGTGTAGTTTCTGTACGAAATGTTTCACAAGGAAGGAACATTTGACTAATCACATGCGTATCCACACTGGGGAGTCTCCTTATAAATGTGAGTTTTGTTCTAAAGCTTTTACGAGGAAGGAGCAGTTGAACAATCATGTTAAGCAACACGCTATGGAAACTGAGTTCAATTGTACGGTGTGTTCAAAACCGTTCCTGAAGAAGGAGACGTTGATCAATCATATGAGAAGTCACACTGGGGAGCGACCGTTCAGTTGTAATGAATGTGGGAAATCGTTTCAACTGAAGGGCAACCTACTGTTCCATCAGCGTTCCCACCAGAAGAACGAGCCGGCCGAACGACCGTTCCGCTGCGATCTTTGTCCGAAAGACTTCACCTGCAAGGGTCACCTGGCGTCGCATCGCAGAAGTCACATGACCGAGCACAAGACCTGTCCACATTGTGACAAAGTTTTCAACGAACGTGCTGGATTACTCAAGCATCTGAAAAAGTATCACAGTGAAGAAATGTTGTCGTTGAAGTGTCAAGTAACACCCAACCTCCATCCTCCCACCATGGTGCATATTCCCTCTCAGTTGTCTACCACGTTACCCCTCCCTCCCCCGCCACCACTGCATCCCGCCGTAGTGGTGCCCACACAGAATAGTGTGTTGGCCACTTACTAG
- Protein Sequence
- MNPDQQQSTMASNGLPSHSQAEVCLSTQQRDEQAAAVNAVTLSNVAKYWVLTQTLFPGHVPQVRTLPCSTLPVSVYGLHAPRLENVKDPLTSVCLTGDSVALVQHQAQIPVNTIPVPVSSSALPALTPAPHIVAVPPAITSTKEEKSSAVEQCNNTGQQQVHCQVQCDMPILQQQLTSSSPATSTTQSATVQTHAQAHAHELAISFTPQQRQQLHEQVAFDGGEYHVTQNRSQPDMFTVLHHHTMAQQHQQDSQGQQQHQRPNSEAGGGRPMEQQQQQLQLVVASGDVVNGCNSVKMETKDIRPPLVNMSAFPGQDPLKIQQQHMQPTQTVDFRAVDGSILKVNGDVDHKTILATTGSTDLSQNMFKVNVEELLAYHEVFGKLQGTSGIPLTTGSLQMATTTTTTTTNTTASGSSTKPNEEGGGNPSPSASPSPPHTSHVCDMCGKSFQYRYQMIVHRRYHSEKKPAFANGNGELQPKTNPNKPHACNVCSKAFGRKEHLENHLRCHSGDTPYKCQFCGKNFTRKEHLVNHISVHTGETPHRCKICKKSFTRKEHYTNHVLWHTGETPHICTICGKKYTRKEHLVSHLRSHTNDTPFRCDICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTNESPHRCSYCTKTFTRKEHLVNHVRQHTGETPFHCQYCPKAFTRKDHLVNHVRQHTGESPHKCMYCTKSFTRKEHLTNHVRQHTGESPHRCSFCTKCFTRKEHLTNHMRIHTGESPYKCEFCSKAFTRKEQLNNHVKQHAMETEFNCTVCSKPFLKKETLINHMRSHTGERPFSCNECGKSFQLKGNLLFHQRSHQKNEPAERPFRCDLCPKDFTCKGHLASHRRSHMTEHKTCPHCDKVFNERAGLLKHLKKYHSEEMLSLKCQVTPNLHPPTMVHIPSQLSTTLPLPPPPPLHPAVVVPTQNSVLATY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -