Sfur003848.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sogatella furcifera
Gene Symbol
-
Assembly
GCA_014356515.1
Location
Scaffold80:15223-28571[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 2.4e-06 0.00012 22.5 3.7 1 23 219 241 219 241 0.97
2 14 5.7e-05 0.003 18.2 2.6 1 23 247 269 247 269 0.99
3 14 4.2e-07 2.2e-05 24.9 0.5 2 23 276 297 275 297 0.98
4 14 4.4e-06 0.00023 21.7 0.9 1 23 303 325 303 325 0.99
5 14 1.5e-05 0.00079 20.0 2.7 1 23 331 353 331 353 0.98
6 14 1.5e-07 7.9e-06 26.3 1.8 1 23 359 381 359 381 0.99
7 14 7.4e-06 0.00038 21.0 2.0 2 23 389 410 388 410 0.98
8 14 2.2e-07 1.1e-05 25.7 1.8 1 23 416 438 416 438 0.99
9 14 0.0053 0.28 12.0 1.0 1 23 444 467 444 467 0.96
10 14 0.00047 0.024 15.3 1.0 1 23 473 495 473 495 0.98
11 14 0.0013 0.067 13.9 4.9 2 23 502 523 501 523 0.97
12 14 2.8e-07 1.5e-05 25.4 3.0 1 23 529 551 529 551 0.99
13 14 4.5e-06 0.00023 21.6 1.3 1 23 557 579 557 579 0.98
14 14 7.4e-06 0.00038 21.0 3.2 1 23 585 608 585 608 0.95

Sequence Information

Coding Sequence
ATGGATTTGGAGGAAGAATCAAGGAGAAGGAGCACGATTTGTATAGGGAAGGAGGTTAAAGTGAAAGATGAGCCACATCTTATACACATCAAAGATGAGGTGGAAACCGGTTATGAAGAAGGAAAATATGAGGAGAGAGAAGACTATAACACCGTCTATTTAAAAGAAGAGTCAGGAACCGGACATGAAGAAAAAAAAGATGAAGAAGAAGGGTACAACACTGTCTTTATAAAAGAAGAAATGCCATGTGAAGAGAGCATGGAGCAGGACAATATCATTCCAGAGGCTGAAGCATCCAAGGATCCTTTTCAACTAGATGGAGAATGCAGTATCACTATGGGTATCCATGCTTCAATCAACAATGGAGACTCTACTGCATCTAAGAGCCTGGGAGAGCAGGAGACTAAACTCAGTGAATTGCAAGAATGCAGTATCACTATGGGTATCCATGCTTCAATTAAGAATGGAGACTCTACTACATCTAACCGCCAAGGAGAGCAGGAGACTAAACTCAGTGAATTGCAAGGTGAATGCTCTGAGTCTGTTGCCAATGATCATTTATCACATGGTTCAAATGTGGACGAAGAATCAATGATTTTGAAATGTGGAGAAAATTGCTCCTCACAAAAGAGTCATAAAAATGGTAATGAGCCTTTCCAGTGTAAATTTTGTAATAAGAGTTTTTCACAAAAAAAACTCCTCACTAAACATGTTAAGGCTCATGCTGGGGAGAAGCCATTTCAATGCGGATTTTGTGATGGATGTTTCTCAAAGAAAATATTGTTGAATAATCATATTAGAACTCACACTGTGAAGAAGCCAATCCAATGTGAGATTTGTGATAAAAGTTTTCCTAAATTATCTAAGCTGAAAATCCATTTAAGGACTCACACTGGTGAGAAGCGATTCCAATGTGAAATTTGTGATAGACGTTTCTCTATAATAACTAGTTTGAAAACCCATATTAGAACACACACTGGGGAGAAGCGTTTCTATTGTGATTATTGTGGTAAAGGTTTCCTACGAAAAACTCATCTGATTAGTCACATTAGATCACACACTGGAGAGAAACCTTTTCAATGTGAGCTTTGTGATAAGAATTATGCACGCAAATATTCATTGAATAAACATATCAGAACTCACACTGCTAGTGCAAAACCTGTGCAATGTAAGTTTTGTGGTGAACAATTCTCAAGTAAATGCAACTTAATTGAGCACATGCTTACTCATTCTCGTGAAAAGCCCTTTCAATGTAAAATTTGTGATAAGAGTTTCACATCTAAACAAAGCTTGATCGTACACAATAGAACTCACACCGGGGAAAAGCCTTTCCAGTGTAAAACTTGTGATAGATTGTTTGCACTTAAAAAAACCTTGATTGAACACAATAAATCAATTCACACTGGGGAGAAACCTTTCCAATGTGAACTTTGTGAGAAATGGTTTCAAAATAGAAGTAAGCTGAAAATCCATATTCAATCTCACACAGGCGAGAAACCTCTCCAATGTAACGATTGTGGCAAAAGATTTTTAAGAAAAAGCCACTTGGTTTGTCACATTAGGAGTCACACTGGTGATAAACCTTTCCAGTGTAAGTTATGTGAGAAAAGGTTCATACGCAATCGATCCTTAAATAATCATATGAGGACTCACACTGGTGAAAAGCCTTTCCAATGTAATTTTTGTGGTAAATGTTTTGCTCTGAAACCCAACTTGATTGACCACATGACGATTCACACTTGTGAGAAGCCTTTCCAATGTGAATTCTGTGGCAAATGTTTCTCAAAGAAAAGATTGTTGAATAATCATATTATTGAAACACATGCTGGTGATTAG
Protein Sequence
MDLEEESRRRSTICIGKEVKVKDEPHLIHIKDEVETGYEEGKYEEREDYNTVYLKEESGTGHEEKKDEEEGYNTVFIKEEMPCEESMEQDNIIPEAEASKDPFQLDGECSITMGIHASINNGDSTASKSLGEQETKLSELQECSITMGIHASIKNGDSTTSNRQGEQETKLSELQGECSESVANDHLSHGSNVDEESMILKCGENCSSQKSHKNGNEPFQCKFCNKSFSQKKLLTKHVKAHAGEKPFQCGFCDGCFSKKILLNNHIRTHTVKKPIQCEICDKSFPKLSKLKIHLRTHTGEKRFQCEICDRRFSIITSLKTHIRTHTGEKRFYCDYCGKGFLRKTHLISHIRSHTGEKPFQCELCDKNYARKYSLNKHIRTHTASAKPVQCKFCGEQFSSKCNLIEHMLTHSREKPFQCKICDKSFTSKQSLIVHNRTHTGEKPFQCKTCDRLFALKKTLIEHNKSIHTGEKPFQCELCEKWFQNRSKLKIHIQSHTGEKPLQCNDCGKRFLRKSHLVCHIRSHTGDKPFQCKLCEKRFIRNRSLNNHMRTHTGEKPFQCNFCGKCFALKPNLIDHMTIHTCEKPFQCEFCGKCFSKKRLLNNHIIETHAGD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-