Sfur012645.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sogatella furcifera
Gene Symbol
-
Assembly
GCA_014356515.1
Location
chr1:60928467-60931076[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 7.8e-06 0.0004 20.9 4.2 1 23 14 36 14 36 0.99
2 16 7.6 3.9e+02 2.0 0.2 7 23 48 64 48 64 0.93
3 16 9.8e-06 0.0005 20.6 3.9 1 23 70 92 70 92 0.99
4 16 5.2e-05 0.0027 18.3 1.5 1 23 98 120 98 120 0.97
5 16 0.00014 0.0071 17.0 0.6 1 23 126 148 126 148 0.96
6 16 0.00012 0.0061 17.2 5.1 1 23 154 176 154 176 0.98
7 16 1.8e-05 0.00093 19.7 1.6 1 23 187 209 187 209 0.97
8 16 6.1e-06 0.00032 21.2 2.8 1 23 215 237 215 237 0.97
9 16 1.3e-05 0.00065 20.2 1.2 1 23 243 265 243 265 0.98
10 16 0.00013 0.0065 17.1 0.5 1 19 271 289 271 293 0.95
11 16 1.7e-05 0.00089 19.8 1.5 1 23 299 321 299 321 0.99
12 16 1.6e-05 0.00084 19.9 2.6 1 23 327 349 327 349 0.99
13 16 2.4e-07 1.2e-05 25.6 1.9 1 23 356 378 356 378 0.99
14 16 1.4e-06 7.3e-05 23.2 0.8 1 23 384 406 384 406 0.99
15 16 8.4e-07 4.3e-05 23.9 1.2 1 23 412 434 412 434 0.98
16 16 0.00021 0.011 16.4 0.7 1 23 440 462 440 462 0.98

Sequence Information

Coding Sequence
ATGATTAAACATATGAGAACCCACACACGAGAAAAGCCTTTTAAATGCACTAAATGCAATAAAGAATTCTCTCAAGAAGAACATTTGATTAGTCATAAGCAAACCCACATTGAAGAAAACCCTTATAAATTTAACACATTCAATAAGGTTTTCTCTCGGAAACGTGACTCAACTATTCATGGAAGAATTCACACAGAAAAAGGCCATTACAGATGTACAAAATGCAATAAAGGGTTCTCTAAAAAAAGACAATTGATTAGCCATAAACAAACCCACATGAAAGAAAAACGCCATAAATGTACTGCATGTAATAAAGGATTCTCTAGAAAAGGAAGTTTGATTGAACATGAAAGACTCCATACCGGAGAAAAACCTTATAAATGTACTATATGCAGTAAAGCTTATGTTAGTAAACAAGCTTTAATCACTCATGAGCAATTTCACACTGGAGAAAGACCTCACAAATGTAAAATATGCAATAGAGATTTTGCTCGAAAGCATTTATTAACATATCATGAAAGAATCCACACACAAGAAAAACCTGTTAGAGAAGGCCCTTACAAATGTACTACATGCAATAAAAGTTATGTTCAAAAAAGAAGTCTGATTGCCCATGAGCAATATCACATTGGAGATAAGCCTTATAAATGTACCAAATGCAATAGAATGTTCTCTTATAAATCATCATTGAAAGAACATGAAGAATCCCACAATGGAGAGAAACAATATGAATGTACTATATGCAATGAGAAATTCTCTCAAAAAGAACATTTGATTGGTCATGAACAATCCCACAATGAAGAGACACCATATGAATGTACTATATGCAATGAGGGGTTTTCACAGAAAGAACATTTGATAGATCATGATATATACCACTTGAAAGAAAGACCTTATTCATGTACTATATGCAATAAAGGGTTCAATAAAAAAGAACGTTTGAATGAACATGAGAGAACCCATACTAGAGAAAAACCTTTTAAATGTACCATATGCAACAAATTGTTTTCTCTGAAACATAACTTAATTGTTCATGGGAGAACTCACACACAAGAAGTTCCTGCTTATAAATGTACCATATGCAATGAAGTGTTTAATCGGAAATATAGCTTAAGTGTTCATCAGAAAACCCACAATGGAGAAAAACCTTTTAAATGTACCATATGCAACAAAGCGTTTTCTATCAAATATAGCTTAATTGTTCATGAGAGAACCCACACAGAAGTCCCTTCTCATAAATGTACCATATGCAATAAAGGATTCCCTGTTAGAATAAATCTGATCAGACATATGCAAACTCACACTAATGAAAAACCTTATGAATGTACCATATGCAATATGAGGTTCCCTCAAAGAGGGAGTAAAATTAAACATGAGAGATCCCACACTGAAATAATACTCATTAATGTGCCATTAGCAATGAAGTATTAG
Protein Sequence
MIKHMRTHTREKPFKCTKCNKEFSQEEHLISHKQTHIEENPYKFNTFNKVFSRKRDSTIHGRIHTEKGHYRCTKCNKGFSKKRQLISHKQTHMKEKRHKCTACNKGFSRKGSLIEHERLHTGEKPYKCTICSKAYVSKQALITHEQFHTGERPHKCKICNRDFARKHLLTYHERIHTQEKPVREGPYKCTTCNKSYVQKRSLIAHEQYHIGDKPYKCTKCNRMFSYKSSLKEHEESHNGEKQYECTICNEKFSQKEHLIGHEQSHNEETPYECTICNEGFSQKEHLIDHDIYHLKERPYSCTICNKGFNKKERLNEHERTHTREKPFKCTICNKLFSLKHNLIVHGRTHTQEVPAYKCTICNEVFNRKYSLSVHQKTHNGEKPFKCTICNKAFSIKYSLIVHERTHTEVPSHKCTICNKGFPVRINLIRHMQTHTNEKPYECTICNMRFPQRGSKIKHERSHTEIILINVPLAMKY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-