Sfur003390.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sogatella furcifera
Gene Symbol
-
Assembly
GCA_014356515.1
Location
chr10:7411455-7417238[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.16 8.2 7.3 5.7 1 20 114 133 114 136 0.93
2 17 1.1e-06 5.9e-05 23.5 0.5 1 23 142 165 142 165 0.98
3 17 9.9e-06 0.00051 20.6 1.6 1 23 170 192 170 192 0.98
4 17 6.2e-06 0.00032 21.2 7.1 1 23 198 220 198 220 0.99
5 17 0.0023 0.12 13.1 4.4 1 23 226 248 226 248 0.98
6 17 1.4e-06 7.1e-05 23.3 1.5 1 23 254 276 254 276 0.98
7 17 2.2e-07 1.1e-05 25.8 3.1 1 23 282 304 282 304 0.97
8 17 5e-05 0.0026 18.4 5.3 1 23 310 332 310 332 0.99
9 17 1.8e-07 9.2e-06 26.0 1.4 1 23 338 360 338 360 0.98
10 17 4.7e-05 0.0024 18.4 3.1 1 23 366 388 366 388 0.99
11 17 0.003 0.16 12.7 7.8 1 23 393 415 393 415 0.99
12 17 7e-05 0.0036 17.9 4.2 1 23 421 443 421 443 0.99
13 17 0.0001 0.0053 17.4 3.6 1 23 449 471 449 471 0.99
14 17 0.00015 0.0079 16.8 3.1 1 23 477 499 477 499 0.94
15 17 4.4e-07 2.3e-05 24.8 6.5 1 23 505 527 505 527 0.99
16 17 3.7e-06 0.00019 21.9 3.8 1 23 533 555 533 555 0.99
17 17 2e-07 1e-05 25.9 2.9 1 23 561 583 561 583 0.98

Sequence Information

Coding Sequence
ATGTCCGAGTGCGAGGCAGAAATCAACACAATTTACATAAAAGAAGAGGTTGAATCCGAATATGAAGAAGAAGATCAAGAAAAAGAAGACCACAAAACAAGCATTAATGAAGAAGTGCCATGTGAGAGTATAGAACGGGATCACAGCGTTCAAGGGGAAGAAGCATCTGAAGATTCCAATCAGCCAGATGAAGAATGCAGTGTAACTATGAGCAGCCTGGTATCAATTGAATTGGGGACAGGTGCTCAACACAATGCATCACTACAAGGTTCCACCAATGGGGAAGACAATTGTTTCTCAGTGGAAAGTTTCAATAAGGCTTCTGAAGGATTGAACCCTTTCCAATGTGAAGTTTGTGGTAAAGAATTTGCACTCAAGTGTAGGCTGAATACACATTTCAAGTGCCACACTGGCGAGAAGCCTTTTCAATGTGATTCTTGTGGCAAAAATTTCACAGTAAAAGCTAGCTTGAGAGCACACATCATGACTTATCATGAAGAGAAGCAATTTCCATGTGAAGTTTGTGGTAAATGTTTCTCAAGTGAGAGAACTTTGGATAAACATTCCAGGATTCATACTGGAGAAAAACCTTTCCAATGTGAATTTTGTGATAAATGTTTCAAACAAAGAGGTCATTTGAATCAACACACGATGACTCATACCGGAGAAAGGCCCCACCAATGTACATTTTGTGATAACAGATATACATACAAAACTGTTTTAATTAAACATTTAAGGACTCACACTGGAGAGAAACCTTTCCAATGTACAATTTGTGATAAACGTTTCGCACAAAGAAACCATTTGAGTGAGCACATACTGATTCACAGTGACGTAAAGGCATTTTCATGTGAAGTTTGTGGTAAATGTTTTTCAAATAGAGATAATTTGAAAAAACATTCAATAACTCACAGTAAAGAAAAGCCTTTCCGATGTGAATTTTGTGATAAATGTTTCTTACGAAAGAAAAACTTGAATGAACACATTAAAACTCACACAGGAGAGAAACCTTTCCCATGTGAATTTTGTGATAAATTTTTTGCACGAAAAAGTAACTTGAAAGAACACCTCAACACTCACACTGGAGTCAAGCCTTTCCAATGTGAATTCTGTGCTAAATGTTTCTCACTAAAACCCTCCTTGCAGAATCACATCAAGACTCATACGGGAGAAACGTTTCAATGTGAGCTTTGTTGTAAATTTTTCTCACATAAAAAAAGCTTAAATGAACACATGAAGAGTCACAATGATGTGAAGCCTTTCCAATGTGAATTTTGTTATAAATTATTTGTCCATAAAAAAAACTTGACTGAACACATTAGGTCTCACACTAAAGAAAAGCCTTACAAATGTACAATTTGTAATAGTTGTTTCTCTTATAAAAATGTTTTAAATGTTCATATAAAGACACATGATAATGAGAAACCTTTCCTATGTGATATTTGTGACAAACGTTTCTCACGTAAATCTGTATTGCATGATCACAAGAAACTTCACAGTGGAGAGAGACCTTTCCAATGTGAGGATTGTAACAAAAGTTTCTCAAAAAAACACCATTTGCAAGATCACATTAAGACTCACACTGGAGAGAAACCTTTCCAATGTGAAGTTTGTAACAAATGTTTTGCGCGAAAAGCTCATGTGAATTTACACATGAAGATTCACGCTGAAGATAGATCTCACCAATGTCAGGTTTGTGATGAAAGTTTCTCAAAACGATCTGCACTGAATAAACACATGAAGACTCACTTGAGCTCATAA
Protein Sequence
MSECEAEINTIYIKEEVESEYEEEDQEKEDHKTSINEEVPCESIERDHSVQGEEASEDSNQPDEECSVTMSSLVSIELGTGAQHNASLQGSTNGEDNCFSVESFNKASEGLNPFQCEVCGKEFALKCRLNTHFKCHTGEKPFQCDSCGKNFTVKASLRAHIMTYHEEKQFPCEVCGKCFSSERTLDKHSRIHTGEKPFQCEFCDKCFKQRGHLNQHTMTHTGERPHQCTFCDNRYTYKTVLIKHLRTHTGEKPFQCTICDKRFAQRNHLSEHILIHSDVKAFSCEVCGKCFSNRDNLKKHSITHSKEKPFRCEFCDKCFLRKKNLNEHIKTHTGEKPFPCEFCDKFFARKSNLKEHLNTHTGVKPFQCEFCAKCFSLKPSLQNHIKTHTGETFQCELCCKFFSHKKSLNEHMKSHNDVKPFQCEFCYKLFVHKKNLTEHIRSHTKEKPYKCTICNSCFSYKNVLNVHIKTHDNEKPFLCDICDKRFSRKSVLHDHKKLHSGERPFQCEDCNKSFSKKHHLQDHIKTHTGEKPFQCEVCNKCFARKAHVNLHMKIHAEDRSHQCQVCDESFSKRSALNKHMKTHLSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-