Sfur002012.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sogatella furcifera
Gene Symbol
-
Assembly
GCA_014356515.1
Location
chr5:3296387-3307137[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 0.08 4.2 8.3 1.3 1 23 100 123 100 123 0.94
2 23 0.00015 0.0075 16.9 1.8 3 23 131 151 129 151 0.98
3 23 0.055 2.9 8.8 3.4 2 23 158 179 157 179 0.97
4 23 0.00033 0.017 15.8 0.6 1 23 185 207 185 207 0.97
5 23 1.5e-05 0.0008 20.0 4.2 1 23 213 235 213 235 0.98
6 23 0.0017 0.087 13.5 7.0 1 23 241 263 241 263 0.99
7 23 2.4e-05 0.0012 19.3 6.4 1 23 269 291 269 291 0.98
8 23 0.00093 0.048 14.4 0.5 1 23 297 319 297 319 0.97
9 23 0.012 0.62 10.9 1.0 5 23 329 347 327 347 0.96
10 23 0.00064 0.033 14.9 4.0 1 23 401 423 401 423 0.98
11 23 1.5e-06 7.8e-05 23.1 0.8 1 23 429 451 429 451 0.98
12 23 9.6e-05 0.0049 17.5 2.0 1 23 543 565 543 565 0.98
13 23 0.00056 0.029 15.0 0.2 1 23 571 593 571 593 0.95
14 23 0.00092 0.048 14.4 2.3 1 23 599 621 599 621 0.97
15 23 0.00041 0.021 15.5 0.8 1 23 706 728 706 728 0.97
16 23 0.00011 0.0055 17.3 1.3 1 23 734 756 734 756 0.98
17 23 0.0033 0.17 12.6 4.4 1 23 834 856 834 856 0.98
18 23 6.3e-07 3.3e-05 24.3 0.4 1 23 862 884 862 884 0.98
19 23 0.00098 0.051 14.3 2.5 1 23 890 912 890 912 0.98
20 23 1.5e-06 7.6e-05 23.2 4.1 1 23 918 940 918 940 0.99
21 23 1e-05 0.00052 20.5 0.1 1 23 946 968 946 968 0.97
22 23 0.0002 0.01 16.5 3.4 1 23 974 996 974 996 0.98
23 23 0.00016 0.0081 16.8 4.2 1 23 1002 1024 1002 1024 0.98

Sequence Information

Coding Sequence
ATGACGAGTGTTGATAAGGAGAACAATAGCAGCCAAAGAGTGGCGCTAGAGCCTTCAATCAATACTAACTGCCAGCAACAGCCCAGCCTTGACTTTGGTCAAATATTCGACAAACAAGAAGTGCATGGAGAATATTCATCCAAAATGGACTGTTCCACAGTTGTTTGTGAACCAGAGATGTGGCCTTCCATTTGCAGTCCATCTAGCCAACAAAACACCACTGACGTTCCTGCAGTTGAAACCACGGGTGAAAACTCCATCTCAACGGGAGGACAGTCGCCAACCAAGGAGAAACGTTTTACATGTGATATGTGTGCATATAAGACAGCCTACGCTTGTAATTTGAGGAAACATGTAGTAAGAGTTCACTCTGGAGAAAAACCTTTTGGTTGCGATAGTTGCGGTCATAAATTTTCCAACACAGGTGACTTGAAAGCTCACCAGAAAACTCACTCCACTGAAAATCCGTTGAGTTGTAAGTATTGTGATTCGAAATTCGCCTGTTCGAGAACTTTGAAAGTTCACGTAAGAACGCATTTCGGGGAGGAGCGTTTCAGTTGTGATCTGTGTGATTATAAGACGGCGTATTCGGGTAATTTGAGGAAACATTTGGGCACTCACTCGGGGGACAAACCTTTTATTTGTAAAATTTGTGGTTATAGATGTGCTCGTTCTAGCGATTTAAAAATTCATCATAGAACTCATTCCGGTGAAAAACCCTATAGTTGTCAACATTGCGATTATAGATTCGCTTGTCAGAGTACTCTAAAAACTCATCTCAGAACTCACTCGGGAGAAAAACCTTTCAGCTGTAATTTTTGTGACTATAGGTGTACTCAATCGAGTAATTTGAGAAAACATCTTAGGAAACACTCCGGTGAAAAACCTTATATTTGTGAATTTTGTGGATATACAAGTGCTCATGCAACTGATTTGAAAATTCATCTGCAATTGCATACAAATGAGAAGGAATCCAGCAGTAGTATTTGTGACTATAAAATTAATGATTCGAGTAATTTGAAAACGCATCACCAAACACATACAGATGAGTACCCAGCCAAGCACAGCTCCACCGTAATGTGGCCTCCGATGTACAGCGCGCCCGGCCAACAAAACTCCACAGCTGTGTCTGGACTTTACGCCGACGGCGGTAAAAACTCTGCAATGGCAAAGCGACAGCCTTCCACCAAAGAGAAACGATTCAGCTGTGATATCTGCGATTATAAAACTGCTTACTCATGCAATTTGAGTAAACACCGGAGGACACATTCGGGCGAAAAACCTTTCGTCTGTAGTATCTGCGGTTATAAATTCAACAATTCTAATGATTTGAAAAATCATCTTCAAATGCATACAGGTGGATATCCAGCTCAATTAGACTGCTCCAACCTGGTCTACGTGCCTCAGATGTGGCCTAACTACTACCAACAAAATACGGGCCAACTTAATAACCAACAAAATGGCTCACTCAATAGTCAACAAAATGGCGTACTCAACAGTCAACAAAACGGCGTACTCAATTCCCAACACAATTCTACTGAACTACCAGCACTTAACAACGTTGACGGTAAAAACGCCACCTCTACAAAACCAAAGAAACCGAGAATTTCGAAAAAAGAGAAGCGCTTCAGTTGTGACATGTGCGACTACAGATCTGCTTTTCTCAGCAATTTGAGAAAACACCGCAGAACTCACTCGGGCGAGAAGCCTTTTGTCTGCAGAATCTGCGGTCTGAAATTTACGAATATAACCGATTTGGAAGCCCATGTGAGTTTTCACCTGGGGGAAAAAGCGCACATCTGCGAAACCTGTGGTTATAAGTGTGATAGTGCCAATGATTTGAAGGTTCATCTTCAAACACATAGCGGTGAAAAAGCTTCCGGCAGTAAATTTTGTAACTTCAAATCAGCCAACTCGAGTAATTCGAAGACTCATCTGCAAACACATACAGACGACTTCCCAGCCGAAGTAGAATGCGTGCCCGAGATATGGCCTTCCATTTGCAGTCCATCCAGCCAACAGAACGCCACCGAAGTATCTCCTCTCGATATTGCCAGTGAAAACGCCATCTCGTCTCTGGCGAAAGAACAGCCCGCCACTGCCAATGACAAATCGCACACCTGTCAGATTTGTGGCTACAAAGCTGCTTCAATAAGTAATTTGCGCAAACATCTGAAAGCTCACCCAGGTGAAAAACCTTTCATCTGCGAATTCTGTGGCTGTAAATTTACTAATTCAAGTGCTTTGGGGATACATCTTAAGATGCACTCAGGAAACGGTTATTCATCTGAAGTGGAGTCTGCCATGGATAGCGAACCCGGCATGTGGCATTTCATCTGCAGCTCATCTCTGCAGCAGCAACAACAGCAGCAGCAGCAAAACAACAACAACAAACCAACCGCAACAACAACAGCAACAACTGCCCCAGAAGTTTCCGGACTACCGGAAAACGCAACTGAAAATCCCACTCCTACAAAGGGACAGTCAGGTGAAAAGCGTTTTAGTTGTGATACGTGTAATTTCAAAACTAACTATCCTTGTAATCTGAAGAAACATCTTAGAATACATTCGGGGGAAAAACCTTTTAGCTGTGACGTTTGTGGTTATAGGTTTACAAACTCTGGCGATTTGAAAAACCATGTTAGAATACATTCCGGTGAAAAACCCTATGCTTGTCAGCTATGTGATTTGAAATTCGCTTGTCAGAGTACTTTGAAAACTCATATTAGAACTCACTCCGGTGAAAAACCTTATAGTTGTGAGTACTGCGATTATAGGTGTGCTCAATCGAGTAATTTGAAGAAACATCTCAGGACTCACACTGGTGAAAAACCGTTCATTTGTGAGTTTTGCGGTTATAAGTTCGCCAGTCCCAGTGCGTTGAGTACACATATAAAGATTCACACCGGCGAAAAACCGTTCAGTTGTCCGCAGTGTGAATACAGATGTAGTCTGTCGAGTACGCTGAGAAATCATCTTAGAACTCACTCGGGTGAGAAACCTTTTATTTGTGAGTTCTGTGACTATAAATGTGCTCAGTTGAGTAATTTGAGGAAACATCAGAAGAAACATTTGAACAGAAACGTTTTCAGTTGA
Protein Sequence
MTSVDKENNSSQRVALEPSINTNCQQQPSLDFGQIFDKQEVHGEYSSKMDCSTVVCEPEMWPSICSPSSQQNTTDVPAVETTGENSISTGGQSPTKEKRFTCDMCAYKTAYACNLRKHVVRVHSGEKPFGCDSCGHKFSNTGDLKAHQKTHSTENPLSCKYCDSKFACSRTLKVHVRTHFGEERFSCDLCDYKTAYSGNLRKHLGTHSGDKPFICKICGYRCARSSDLKIHHRTHSGEKPYSCQHCDYRFACQSTLKTHLRTHSGEKPFSCNFCDYRCTQSSNLRKHLRKHSGEKPYICEFCGYTSAHATDLKIHLQLHTNEKESSSSICDYKINDSSNLKTHHQTHTDEYPAKHSSTVMWPPMYSAPGQQNSTAVSGLYADGGKNSAMAKRQPSTKEKRFSCDICDYKTAYSCNLSKHRRTHSGEKPFVCSICGYKFNNSNDLKNHLQMHTGGYPAQLDCSNLVYVPQMWPNYYQQNTGQLNNQQNGSLNSQQNGVLNSQQNGVLNSQHNSTELPALNNVDGKNATSTKPKKPRISKKEKRFSCDMCDYRSAFLSNLRKHRRTHSGEKPFVCRICGLKFTNITDLEAHVSFHLGEKAHICETCGYKCDSANDLKVHLQTHSGEKASGSKFCNFKSANSSNSKTHLQTHTDDFPAEVECVPEIWPSICSPSSQQNATEVSPLDIASENAISSLAKEQPATANDKSHTCQICGYKAASISNLRKHLKAHPGEKPFICEFCGCKFTNSSALGIHLKMHSGNGYSSEVESAMDSEPGMWHFICSSSLQQQQQQQQQNNNNKPTATTTATTAPEVSGLPENATENPTPTKGQSGEKRFSCDTCNFKTNYPCNLKKHLRIHSGEKPFSCDVCGYRFTNSGDLKNHVRIHSGEKPYACQLCDLKFACQSTLKTHIRTHSGEKPYSCEYCDYRCAQSSNLKKHLRTHTGEKPFICEFCGYKFASPSALSTHIKIHTGEKPFSCPQCEYRCSLSSTLRNHLRTHSGEKPFICEFCDYKCAQLSNLRKHQKKHLNRNVFS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-