Sfur009475.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sogatella furcifera
Gene Symbol
-
Assembly
GCA_014356515.1
Location
chr3:54794318-54805816[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 2.3e-07 1.2e-05 25.7 2.2 2 23 130 151 129 151 0.97
2 20 0.0092 0.47 11.2 7.3 1 23 157 180 157 180 0.90
3 20 6.5e-06 0.00034 21.1 4.3 1 23 186 208 186 208 0.98
4 20 8.3e-08 4.3e-06 27.1 5.4 1 23 214 236 214 236 0.99
5 20 6.6e-05 0.0034 18.0 2.9 1 23 242 264 242 264 0.99
6 20 0.00048 0.025 15.2 1.2 5 23 274 292 273 292 0.96
7 20 2.8e-08 1.4e-06 28.6 2.1 1 23 302 324 302 324 0.99
8 20 6.7e-06 0.00035 21.1 1.1 1 23 330 352 330 352 0.98
9 20 1.6e-07 8.1e-06 26.2 1.6 1 23 358 380 358 380 0.99
10 20 1.4e-06 7.5e-05 23.2 1.9 1 23 386 408 386 408 0.97
11 20 0.036 1.8 9.4 1.4 1 23 414 433 414 433 0.81
12 20 5.2e-08 2.7e-06 27.7 4.1 1 23 439 461 439 461 0.99
13 20 2.4e-08 1.2e-06 28.8 4.6 1 23 467 489 467 489 0.99
14 20 1.3e-07 6.7e-06 26.5 2.7 1 23 495 518 495 518 0.98
15 20 0.0065 0.34 11.7 1.2 1 23 524 547 524 547 0.95
16 20 1.4e-07 7.4e-06 26.3 3.1 1 23 553 575 553 575 0.99
17 20 1.4e-08 7.4e-07 29.5 1.6 1 23 581 603 581 603 0.99
18 20 7.8e-06 0.0004 20.9 1.8 1 23 609 631 609 631 0.98
19 20 9.6e-06 0.00049 20.6 2.5 1 23 637 659 637 659 0.99
20 20 1.7e-07 8.9e-06 26.1 3.4 1 23 665 687 665 687 0.98

Sequence Information

Coding Sequence
ATGGACCCACTGATGTCTACCAATCCATTATCTCCCATGGAAGAAGAGATGATAACTAGGAATGAAGAAGTCGAAGAAAATGAAAAAGCACAAGAGGATCTTCCAGAAAGAGAAGATATAGAAGAGGAGGAGGAGAAGGAAGAACTAACTTTGCCAGCTGCTTTTGTTAAGCTTTATAGGAGTGAAATGCTTGATAGAGAGGCCAGAATACAGTTCACAAAGAAGAGCTTGAATAAAGGGCAGTCATCTTTATACAGTAATCACTCTGAAGAAGAAGAAGGGACAGAAGAAGAGGAAGAAGGAGATGATGACTATTTTTGCAATGAGGCAGATGAAGAGAAAGAAGAAGAAAGAAGACCACGGAAAACAAATAATAAAAAGTCTCTCCAATGCACAGATTGTACAAAAATATTTTCTCACTCCAGTGCATTGAAAAGGCATATGATTACTCACACCAAGGAAAAGCCATATGAATGTACAGTCTGTAAAAAAAGGCTATCTTCATCACACCATTTGAAAAGGCATTGTATGCGTATTCACACAAAAGAAAGGCCTCATCAGTGTACTGTCTGTTCTAAAAGGTTCTGTGAGCCTTCTGATTTGAAAGTCCATTTGCGAACTCATACCAAAGAGAAGCCCTATCAGTGCACAGTTTGTTCAAAAAGGTTCTCTTCGTCCACACATTTGACTAGACATATGCGTACTCACACCAAAGAAAAACCATATGAATGTACAGTCTGTAGAAAAAGGTTCTATGAATCTTCTCATTTAAAAGGCCATTTGCTTACTCACAACAAAGAGAAACCCTATCAGGGCACAGTGTGTACAAAAAGGTTCAATTATTCTGGTAATTTGAATGTTCATATGCATACTCACACTAGTGTCACTAAAGTTGAGAAGCCTTATCAATGTAAAGTATGTACTAAAAGATTCTCTACATCTTCTAATTTGAATTCCCATATGAATATTCACGCTGAAGAGAAACCCTATCAGTGCATTGTGTGCACAAAAAGGTTCAATTATTCTGGTAATTTGAATGTTCATATGCGTACTCACACCAAAGAAAAACGATATCAGTGTACTGTCTGTACAAAAAGGGTCTCTTCATCTTCCAATTTGAATAGTCACATGCGTACTCACACCAAAGAAAAGCCACATGAGTGTACAGTCTGTGAAAAGAGGTTCTCTGAATCTTCTGATTTGAAAAGACATATGGGTACTCACACCAAAGAAAAGCCCTATCAGTGTACTGTCTGTACAAAAAGGGTCTCTAGATTGAATATCCATATGCGTACTCACACCAAAGAAAAGCCATATCAATGTAAATTTTGTGAAAAGAGCTTTACTAATCATTCGAATTTGAATGCCCATATCCGTACTCACACCAAAGAGAAACCCTATCAATGCACAATCTGTACAAAAAGTTTCTCACACTCTTCCAGTTTGAATACACACATGCGTACTCACACCAAAGAGAAACCCTATCAATGCACAATCTGCACAAAAAGTTTCTCACAATCTCATAATTTGTCTAGACATATTATGTCCATCCACACTAAAGAAAAGCCTTATTATTGCACAGTCTGTGCAAACAGATTCTCTACATACTATGAATTGAATGTACATAATATGCGTACTCATACCAAAGAAAAGCCTTATCAGTGTTCTTTCTGTACAAAAAGGTTCTCACAATCTTCCAATTTGAATGAGCATTTACGTACTCACACCAAAGAAAAGCCATATCAGTGTACAGTTTGTACAAAAAGATTCTCTACATCATCTTCCTTGAGGGCCCATATGCGAATCCATACCAAAGAGAAACCTCATCAGTGTCCAATCTGTTCAAAAAGGTTCTCGATCTCCTCCAGTTTGATTTTACATAGACGTAGTCACACCAAAGTGAAACCATACCAGTGTACAGTCTGTGCAACAAGGTTCTCTATCTGTTCTAATTTGAATCGACATATGCGTATCCATACTAAAGAGAAGCCTTATGCATGTACAGTCTGTACAAAATGCTTTTCACAATCTGACAGTTTGAATACACATATGCGTACTCACACCATAGAAAAGCCATATCAGTGA
Protein Sequence
MDPLMSTNPLSPMEEEMITRNEEVEENEKAQEDLPEREDIEEEEEKEELTLPAAFVKLYRSEMLDREARIQFTKKSLNKGQSSLYSNHSEEEEGTEEEEEGDDDYFCNEADEEKEEERRPRKTNNKKSLQCTDCTKIFSHSSALKRHMITHTKEKPYECTVCKKRLSSSHHLKRHCMRIHTKERPHQCTVCSKRFCEPSDLKVHLRTHTKEKPYQCTVCSKRFSSSTHLTRHMRTHTKEKPYECTVCRKRFYESSHLKGHLLTHNKEKPYQGTVCTKRFNYSGNLNVHMHTHTSVTKVEKPYQCKVCTKRFSTSSNLNSHMNIHAEEKPYQCIVCTKRFNYSGNLNVHMRTHTKEKRYQCTVCTKRVSSSSNLNSHMRTHTKEKPHECTVCEKRFSESSDLKRHMGTHTKEKPYQCTVCTKRVSRLNIHMRTHTKEKPYQCKFCEKSFTNHSNLNAHIRTHTKEKPYQCTICTKSFSHSSSLNTHMRTHTKEKPYQCTICTKSFSQSHNLSRHIMSIHTKEKPYYCTVCANRFSTYYELNVHNMRTHTKEKPYQCSFCTKRFSQSSNLNEHLRTHTKEKPYQCTVCTKRFSTSSSLRAHMRIHTKEKPHQCPICSKRFSISSSLILHRRSHTKVKPYQCTVCATRFSICSNLNRHMRIHTKEKPYACTVCTKCFSQSDSLNTHMRTHTIEKPYQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-