Sfur004092.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sogatella furcifera
Gene Symbol
-
Assembly
GCA_014356515.1
Location
chr14:5573725-5594604[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 0.00062 0.032 14.9 0.2 2 23 299 320 298 320 0.96
2 23 0.0016 0.084 13.6 6.9 1 23 326 348 326 348 0.98
3 23 2.4e-05 0.0012 19.3 2.9 1 23 354 376 354 376 0.98
4 23 1.7e-07 9e-06 26.1 1.4 1 23 382 404 382 404 0.99
5 23 3.1e-08 1.6e-06 28.5 3.1 1 23 410 432 410 432 0.99
6 23 0.057 2.9 8.7 0.2 1 14 438 451 438 452 0.90
7 23 2.3e-05 0.0012 19.4 0.7 2 23 518 539 517 539 0.97
8 23 6.6e-07 3.4e-05 24.3 3.3 1 23 545 567 545 567 0.99
9 23 4.6e-06 0.00024 21.6 7.0 1 23 573 595 573 595 0.99
10 23 3.5e-06 0.00018 22.0 7.0 1 23 601 623 601 623 0.99
11 23 3.2e-07 1.7e-05 25.2 2.6 1 23 629 651 629 651 0.99
12 23 6.4e-05 0.0033 18.0 2.5 1 23 657 679 657 679 0.97
13 23 5.7e-06 0.00029 21.3 1.9 1 23 685 707 685 707 0.99
14 23 6.6e-06 0.00034 21.1 3.8 1 23 713 735 713 735 0.99
15 23 1.1e-06 5.5e-05 23.6 5.9 1 23 741 763 741 763 0.99
16 23 0.00057 0.03 15.0 6.7 1 20 769 788 769 790 0.95
17 23 0.002 0.11 13.3 1.6 1 23 948 970 948 970 0.98
18 23 9.6e-07 4.9e-05 23.8 2.5 1 23 976 998 976 998 0.98
19 23 1.5e-05 0.00078 20.0 1.9 1 23 1004 1026 1004 1026 0.99
20 23 1.8e-05 0.00092 19.8 0.7 1 23 1032 1054 1032 1054 0.97
21 23 4.2e-07 2.2e-05 24.9 1.8 1 23 1060 1082 1060 1082 0.98
22 23 1.9e-07 1e-05 25.9 1.3 1 23 1088 1110 1088 1110 0.98
23 23 0.0001 0.0054 17.3 4.8 1 23 1116 1138 1116 1138 0.99

Sequence Information

Coding Sequence
AGCGCTGCAAATTGTTTAGGTTATGTTGAATACATTTTTAATTTGTTTTTTTTATGTTTTCTTGAGCGAAAATTTTTGTACAATTTCACCAAAATATCATTCAAGATGAGTAATTTAGAAGACAACGAGCATGTAATCCAGATTGCAGCATTGTGTGTGCAGGTAAAGAGTGAGCCTGTGGAAGCAGGCGAGAGCTGTAATGAATGGACAGCAGTGGATATCAAAGATGAGATAGACATTGATGATAGTTGTTCCTGGTCAGTCTTCAGAGAGGCACAGGCGCACATCAAGCAAGAACAGAATGATGAATCTACAATTACCATATCCATTATTGATAAGCCTTCCTACTCCAATTTGGAACTAGAAACTTGCGGGAAAATAGTGCAACTAGTATTAAGAAGGCTTGAAGACTGGGTTGATGGCTTGGATATTGTGCAAAAGAAGACATCTTTCAAGGTGAAGAGTGAAGCCTCCTCTATGGATGCAGCAGACGACAGCTCTGATGAATGGCCAGCAGTGGACATCAAACATGAAATAGACATTGACGATAGTTGCTACTGGTCAGTCATCAAGCAAGAACAGAATACATCCAGGAATGGTGACTTGTTGAATGAAGAAGGAGAGGCACACATTAAGGAAGAGAGAGACAAACCGATGGAGAGAGAAGTGAACGATGACCAAATGTCTGACAAGAACTCTTGCAGGATTGAGTTGTTGGGAGGAGTAGGTGGAGGAGAGAAAGAAGAAGATGATAACATCAAACAAGAGGAAGTAAACAGAGAACAAGAGGTCAAAGAAGAAGAAACAGAAGTGGAAGAACCGGGAACAGAAGAAGAAGGTGTTGGGAAAGAACAAGAAGGCAGAACCAGTTCATCATCTGCCAAGAAGACTCTTGAGTGCACTTTTTGTACAAAACTTTTCTCTTTCCCTAGTGTATTGGAAGCTCACATGCGTGCACACACCAAGGAAAAGCCTTTTCAGTGTACAATCTGTACAAAAAGGTTTTCTTGGTCTCATCATTTGAATCGTCATAAGCTTACACATACCAAGGTAAAACCTTATCAGTGTACTATCTGTACAAACAGGTTCACTAGGTTATACAATTTAAATGTTCATATGCACATACATACTAAGAAAAAACTTTATCAGTGTACTGTCTGTAAAAAAAGTTTCACTGAATCTAGTAAATTGGCTGTTCATATGCGTACACATACTAAGGAAAAGCCCTATCAGTGTACTGTTTGTACCAAATGTTTTTCCGATTCCAGTGCTTTGATTAAGCATATGCGTACACATACAAAGGAAAAGCCCTATCAGTGCACTTTATGTACAAAGATGTTTTCTGATTCAATGAACAGTGACCAAATAACCGACAGAAAGCCTTGCAAGATTGAGTTATCTGGAGGAGAAGAGAGAGGAGAAAAAGATAACATCAAACAAGAGGGAAAAAACACAGAAGACGTAGAAGAAGAAGAAGAAACAGCAACTGATGAAGGTGTTGAGAAAGAGCAAAACGGCAGAACCAGTTCATCATCTGCCAAGAAGATTCTTGAGTGCACTTTTTGTACAAAACTTTTCTCTTTCCCTAGTCTATTGAAAGCTCACATTCGTACACATACCAAGGAAAAGCCTTTTCAGTGTACCGTCTGTACCAAATGTTTCTCTGAATCTGGTACTTTGATAAGGCATATGCGAACACATACCAAGGAAAAGCCTTATAAGTGTACTGTCTGTACCAAATGTTTTTCTTCATCTAGTAATTTGAATAGTCATTTGCATACACATACAAAGGAAAAGCCTTTTCAGTGCACTGTCTGTAACAAATGTTTCTCTGTTTCTTGTAATTTGACAACACATATGCGTACACATACAAAGGAAAAGCCTTATAAGTGTACTGTGTGTGCCAAATGTTTCTCTCAATCTGGTTCATTGAATGTTCATATGCGTACACATACTAATGAAAAGCCTTATCAGTGTATTGTCTGTACCAAATGTTTCTCTATTTCCAGTTCTTTGATCCAGCATATGCGTACACATACAAAGGAAAAGCCTTATGAGTGTACTGTCTGTAAAAAAGGTTTCTCTGTATCTGATAGTTTGATGAAGCATATATGTACACATACTAAGGAAATGCCATATCAGTGTTCTGTCTGTACACTACAATTTTCTCAATCTTATAATTTGATGAGACATATGCACACACATACTAATGAAAAACCTTATGAGTGTTCTGTGTGTACCAAATGTTTCTCTGCTTCTAGTCATTTGACCAAGCATATGCGAACACATACCAAGGAAAAGCCTTATCATTGTTCTTCTTGTAATAAATGTTTCTCCGATTCCAGTGCTTTAAAAAGACATATACACCACAATAGCCAATATCCGTTTGAAATGGTAATGATCAAGGAAGAAGTAGAGGACAAAGAAGAAGAAGAAGAGCAAAATGTGGGAGTAGTAGAAGAAGAACAGACTATGGGAATTGTGGAAGAAGTGCAGAATGTGGAAATTGTTGAAGTTGGAGTGAGTAAAGAAGAGATTGAAGAGGAAGCATCAATCAACTATGAAAACTTCTCTTGTGATTCATCAAACAGGTTTGTGGTTGAACCTAAACCTATGAAAGAAGAAACCCTGGAACATATAGGAGAAAAGGAGTCAGATGAAGTGGAACGTGAAGTTCAGGACATATTTCATGATACAGATCACTCAATATTTACCTTCAATAATGAAGAATCTTATGCTCCAAATGAACTAGACATGAGTGTAGATGTTGAAGAACAAGGAACTTCATCTTCTGTAAATGACCAAGTTTTATTACCATCAACTATCCAGGATGTCAAGCCTTATACTTGTGAATTCTGTAACTTTATGACTAATAGAAAATCTAGTATTATTAAACATATTCGGGATCATACTGGTGAAAGACCTTATAAATGTGATTATTGTGATAGATCCTTCACTCAAAAATCAAAACTTATAACACATACATTGTCACACACTGGGGAAAGACCCTTTAAATGTGAATTTTGTGAGAAATCGTACCCAAAGAAATCATCGCTCAACACACATTTACTTACTCATTCTGGGTTAAAACCTTTTAATTGTGAATTTTGCGGAGGATCTTTCACACAAAAATCAGGTCTTAACAAACATCTACTCTCACACACTGGGGAGAAACCTTATAACTGTGATTTTTGTGATAAATCGTTCTCGCAAAAAGTGAACCTGACGTCACATTTGAATACGCACACTAAAGAAAAACCTTTTGTCTGTGATATTTGTGGTTTATCATTCGGTCATAAATCGAATCTTAAAAATCATGTCAGAACACATACTGGGTTAAGACCTTACAAGTGTGAATTCTGTGCAAAATCATTTGCTAGAAGAACGTGTCTTAACAGACATTTACGTCAACATACTAGATAA
Protein Sequence
SAANCLGYVEYIFNLFFLCFLERKFLYNFTKISFKMSNLEDNEHVIQIAALCVQVKSEPVEAGESCNEWTAVDIKDEIDIDDSCSWSVFREAQAHIKQEQNDESTITISIIDKPSYSNLELETCGKIVQLVLRRLEDWVDGLDIVQKKTSFKVKSEASSMDAADDSSDEWPAVDIKHEIDIDDSCYWSVIKQEQNTSRNGDLLNEEGEAHIKEERDKPMEREVNDDQMSDKNSCRIELLGGVGGGEKEEDDNIKQEEVNREQEVKEEETEVEEPGTEEEGVGKEQEGRTSSSSAKKTLECTFCTKLFSFPSVLEAHMRAHTKEKPFQCTICTKRFSWSHHLNRHKLTHTKVKPYQCTICTNRFTRLYNLNVHMHIHTKKKLYQCTVCKKSFTESSKLAVHMRTHTKEKPYQCTVCTKCFSDSSALIKHMRTHTKEKPYQCTLCTKMFSDSMNSDQITDRKPCKIELSGGEERGEKDNIKQEGKNTEDVEEEEETATDEGVEKEQNGRTSSSSAKKILECTFCTKLFSFPSLLKAHIRTHTKEKPFQCTVCTKCFSESGTLIRHMRTHTKEKPYKCTVCTKCFSSSSNLNSHLHTHTKEKPFQCTVCNKCFSVSCNLTTHMRTHTKEKPYKCTVCAKCFSQSGSLNVHMRTHTNEKPYQCIVCTKCFSISSSLIQHMRTHTKEKPYECTVCKKGFSVSDSLMKHICTHTKEMPYQCSVCTLQFSQSYNLMRHMHTHTNEKPYECSVCTKCFSASSHLTKHMRTHTKEKPYHCSSCNKCFSDSSALKRHIHHNSQYPFEMVMIKEEVEDKEEEEEQNVGVVEEEQTMGIVEEVQNVEIVEVGVSKEEIEEEASINYENFSCDSSNRFVVEPKPMKEETLEHIGEKESDEVEREVQDIFHDTDHSIFTFNNEESYAPNELDMSVDVEEQGTSSSVNDQVLLPSTIQDVKPYTCEFCNFMTNRKSSIIKHIRDHTGERPYKCDYCDRSFTQKSKLITHTLSHTGERPFKCEFCEKSYPKKSSLNTHLLTHSGLKPFNCEFCGGSFTQKSGLNKHLLSHTGEKPYNCDFCDKSFSQKVNLTSHLNTHTKEKPFVCDICGLSFGHKSNLKNHVRTHTGLRPYKCEFCAKSFARRTCLNRHLRQHTR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-