Sfur004614.1
Basic Information
- Insect
- Sogatella furcifera
- Gene Symbol
- retn
- Assembly
- GCA_014356515.1
- Location
- chr2:12103196-12249131[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-26 3.6e-23 82.0 0.0 2 89 221 306 220 306 0.96 2 2 3 3.9e+03 -1.5 0.0 15 38 432 458 410 459 0.73
Sequence Information
- Coding Sequence
- ATGGAGATGGACCATAGGGACAGCGATCTTGAGGGCAGCGTGTGCTCTCCAGACTACGTTGCAGGTCGACGGATATTCGACAATGGTTCTCGGATATCCGAAGCATTCTGCTCACCTATACTGAAAATGGCACAAGACTCCGACAATAGGTCTGGAGCCGAAATGAGCGAAGCTGAAGATGATAGTGACGATGCCATGCAGCAGAGGCATCAGGCCACCCCTCCCACGCCTCCTGCCTCACTCACTGTCACACCCAACTCCGAACACGATATCATCACTAAGATAAAGCGCGAACGCGACGAGCTAGACAGAGACGAGCACACCAAATCAGTGGTTCACTCAACACTGCAACAGCTGACCTCGACGGCGGCAGGCGGCTCTGCCTCCGGAGGCGGTCTTCTGCCGCCCAACTTCTCTCTGCCGCTGCCGTTTCCCTTTCCGCCACCCGCTGCCTTCCTACAGCCGGCGCCCGCCTACCCGCCCGCCCCACATCACCCGCCTCCGTCGGCCGCCTCCAACGCGCTGCCTCCTTCCAGCAGTTCTTCGCACTCCAGTGAGTCGTCCACCACCTCATCCTCGGCAGCCCAACAGCAGACCTGGTCCTTTGAGGAGCAGTTCAAGCAGGTGCGTCAGCTGTACGAGTTAAGTGATGACCCAAAACGGAAGGAGTTCCTAGATGACCTTTTCAGCTTCATGCAGAGGAGAGGTACACCAATCAACAGACTGCCGATTATGGCAAAATCAGTGCTGGACCTCTACGAGTTGTACAACCTGGTGATCCAGCGCGGAGGCCTTGTCGACGTTATTAACAAAAAACTCTGGCAAGAGATCATCAAGGGTCTACATCTGCCATCCTCAATCACATCGGCAGCATTCACCCTGCGAACACAATACATGAAATACCTGTACCCGTACGAGTGTGAGAAGCGACGCCTTAGCACACCTGTTGAGCTGCAGGCGGCCATCGACGGCAACCGACGTGAGGGCCGACGTGGTAGTTACGGCTACGGCGACGTGATGAGCAGCCACCACCAGCAGCAGCAGCGCAGCCCCACGCAGATGAGTCCGCTCAGCCTGGTTACAGCTAACATGGCGGCTCATTTGGCACCACATCGCCAACCGCATCTCAACGGAAACTCACAGCACCATCCCTCACATCATCATCTGATGCCATCCGCCATGCAAGGTCCTCTTCCAGGAGTAGTACCACCAGAATTTGAAGCGAGAATGGTCGAATACGTCAAATTTTTAAATAAGGAACTCAGGAATTCAGCATCAACACCTCCCAATCACAGGCAAAATTCACCGCCAGGCTCTCCACACGAGCCATCGTTCAGCGAGATGTCACGCCTGTCTTTGTGGAACCTGTACCACGGTGGCGGGGGCGGCAGCGCCTCTTCGCCGCCCCTGGCGCTGGCTCCCGCCTCCCACTCGAGCCCCGCTACCCCCGAGCCACAGAAGGAGCCCATCAATCTGGAGAAGCGCGAGTCGAGCTCAGCCTCTCCGCCGGCCAAGCGACCTGTCTCCGCCAGCCCCGAGCCCACTAAACTGCCTCATATCAAGATCTCCAACAAAGGTGATGGTAGAACATCAGATAGTTCTCTGGTGGTCACAATAGACATAAACGGCATCGAGTACCGTGGCGTTGTCTTTGCACAGACTCCCCCTCACACAGCTAACAACAATAACAACAACAACAGCAGCAACAACAACACTAGTACTAGGCATTCTTCGTGA
- Protein Sequence
- MEMDHRDSDLEGSVCSPDYVAGRRIFDNGSRISEAFCSPILKMAQDSDNRSGAEMSEAEDDSDDAMQQRHQATPPTPPASLTVTPNSEHDIITKIKRERDELDRDEHTKSVVHSTLQQLTSTAAGGSASGGGLLPPNFSLPLPFPFPPPAAFLQPAPAYPPAPHHPPPSAASNALPPSSSSSHSSESSTTSSSAAQQQTWSFEEQFKQVRQLYELSDDPKRKEFLDDLFSFMQRRGTPINRLPIMAKSVLDLYELYNLVIQRGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPVELQAAIDGNRREGRRGSYGYGDVMSSHHQQQQRSPTQMSPLSLVTANMAAHLAPHRQPHLNGNSQHHPSHHHLMPSAMQGPLPGVVPPEFEARMVEYVKFLNKELRNSASTPPNHRQNSPPGSPHEPSFSEMSRLSLWNLYHGGGGGSASSPPLALAPASHSSPATPEPQKEPINLEKRESSSASPPAKRPVSASPEPTKLPHIKISNKGDGRTSDSSLVVTIDINGIEYRGVVFAQTPPHTANNNNNNNSSNNNTSTRHSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -