Sate012472.1
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- -
- Assembly
- GCA_033063855.1
- Location
- CP093831.1:15532303-15533644[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 9.4 3.9e+02 1.8 0.1 2 9 134 141 133 153 0.81 2 9 2 84 3.9 8.8 1 23 159 181 159 181 0.97 3 9 0.017 0.72 10.4 0.2 1 23 190 215 190 215 0.96 4 9 0.05 2.1 9.0 5.9 3 23 225 246 223 246 0.94 5 9 0.0011 0.045 14.2 3.1 3 23 254 274 252 274 0.95 6 9 0.054 2.3 8.8 1.1 3 23 281 301 280 301 0.96 7 9 0.0015 0.061 13.8 0.8 2 23 307 331 306 331 0.93 8 9 0.00037 0.015 15.7 3.7 1 23 337 360 337 360 0.96 9 9 0.17 7 7.3 0.3 5 23 371 390 366 390 0.88
Sequence Information
- Coding Sequence
- atgatgaaCTCAACGTCTTTGGGAGTTTGCTTGTGTTGTTTTAAAGAAGTTGGAGCTGATGAAGATGTTACTGAAATCACATCGAGTATCAGCAAATGGTTCATTGAGCTATTTGGCTTTGAATTAACAAGATCATatcaaagaaatcgaatCGTCTGTGATGTTTGTTATAAAGATCTGAAACATTGCATTGACTTTCGAGACAGAATAATTCAATGTCAGCAGAAGAGTTCCATCGAAGCAGTTTCATCGTGCGACGATCCACTTGAAAGTTatgttgaagtgaaattagaaaatgcAGTTTCAAACGAGATCACAGAAGCTGCGACTGTTGATGAATCaTCTGAACTACATTTAGaattaacaaaatcaaacacaaaaaagtCTAAGACGAGAAAACAATGTCCAACTTGCggaatttttgttatcaaccTTCCTGAGCATCAGAAAATGGTTCATCAGGCATGCAAACGTTTCTGTTGTGATTACTGTAGTTACTCTTGCTatttcaaaacgaaaatatctCGTCACCTACAACGACACATACCCAAACACCTCCGAAAGAGATATCCGTGTGAAGTAGAAAACTGCAATTTCTTCGCGACACGAAAAGATGCGCTAAGATCTCATGTCTCAACAATGCATCAAGTTGATCGAGGAAAAGTCTGTCTTTGCGTTGAATgtggaaaaagatttttcaacaaaactcaACTTAAATGTCATTACAAATCTGTTCACGAGAAGATTAAGAATCATCTGTGTAACTTCTGTGGAAAATCATTCTTTAACTTGAAGGACATGGAAATGCATGTTAAGCGCCATGGCAGTAAGGATCAAGCATGTGATATTTGCGGAAATCTATTTTACTGCTCACTCGATCTACGAAGAcatatgaaaattcattctgaCCCAACAATCGAATGCGAGGTTCAGGATTGTAGCAAGAAATTTTATACAAatagcaaaatgaaaatgcacGTGAAGATTCGTCACGAAGGtgtcaaagatttcttctgtGACTACTGCAGTTCCAAATTTTCTCAACATAATAATCTCCAACGACATGTCAACTCCGTTCACAAAAGTCTTCGTATTAATTGCCTTGTGTCTGGATGCTCTTATTCCGTGGCGAGGAAGGACAAATACAAGAACCATCTTGCATCACAGCACAAATTTCTTGATGATCACACCAAAGAGTCAATATTAAAAAGTGTaaagtttgaatga
- Protein Sequence
- MMNSTSLGVCLCCFKEVGADEDVTEITSSISKWFIELFGFELTRSYQRNRIVCDVCYKDLKHCIDFRDRIIQCQQKSSIEAVSSCDDPLESYVEVKLENAVSNEITEAATVDESSELHLELTKSNTKKSKTRKQCPTCGIFVINLPEHQKMVHQACKRFCCDYCSYSCYFKTKISRHLQRHIPKHLRKRYPCEVENCNFFATRKDALRSHVSTMHQVDRGKVCLCVECGKRFFNKTQLKCHYKSVHEKIKNHLCNFCGKSFFNLKDMEMHVKRHGSKDQACDICGNLFYCSLDLRRHMKIHSDPTIECEVQDCSKKFYTNSKMKMHVKIRHEGVKDFFCDYCSSKFSQHNNLQRHVNSVHKSLRINCLVSGCSYSVARKDKYKNHLASQHKFLDDHTKESILKSVKFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -