Sate010663.1
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- Abca3_1
- Assembly
- GCA_033063855.1
- Location
- CP093831.1:6864820-6871691[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0009 0.037 14.5 0.3 2 23 1201 1223 1200 1223 0.94 2 10 5.1 2.1e+02 2.6 4.2 1 23 1229 1251 1229 1252 0.94 3 10 0.78 32 5.2 0.0 2 20 1272 1290 1271 1290 0.93 4 10 0.08 3.3 8.3 1.1 2 23 1337 1359 1337 1360 0.93 5 10 0.5 21 5.8 0.1 3 23 1365 1385 1364 1385 0.96 6 10 0.57 24 5.6 0.2 1 23 1395 1418 1395 1418 0.94 7 10 6.3e-05 0.0026 18.1 0.5 2 23 1457 1478 1456 1478 0.95 8 10 1.8 74 4.1 1.8 1 23 1486 1511 1486 1511 0.96 9 10 0.15 6.3 7.4 0.5 2 23 1517 1538 1516 1539 0.94 10 10 1.3e-05 0.00054 20.2 1.6 1 21 1545 1565 1545 1566 0.96
Sequence Information
- Coding Sequence
- ATGATCATCGTGTTCAGCATGTTCTTCTCGGTTGgcaatttaataaatAGTGTTGCGGTAGAACGTGAAAGTCAATTAAAAGAGTTAATGAAGATTATGGGACTGTCATCGTTTCTTCATTGGAGCTCTTGGTTCATTTTGGTCTTCATAAAGCTCTTAATATCCTTCACACTTGTCgtcattttattaaaatttgacGTTGTAAATCAAGATCCAATGTTCGGGATGAGTAATTTCCTTATCGTGTGgatattttttgttatctACATTACAGCTGTTATCAGTTTATGCTTTTTTATCGGTGCAGTGTTTAAAAAGCCAACAACAGCAACTAATATTGGAGTCATGCTGTTTTTCGCTACAATCATTCCGTATTTCCAATTTACTCAGTACTTCAGCTCACTTCATTACGCGGTAAAGTTCCTCTTCTGCTTGCCAATCAACACAGGTCTCGGAGAAGGAATCGCTTTAATTCTCAGATTTGAAATGGGAGGCGACGGCATtcagttttcaaattttttcacGAGAGATGACACaggattttcatttgctgaAATAATCTTAGTGATGGTTGTTGCGATCTTCATTCACATCGGATTGCTCATCTATGTCGAGAATGTTTTCCCTGGTGGAACGGGCAATGCAAAGCCTTGGCACTTTCCATTCAGTTCGTGCTTTAAAcgagaaaacgagaagatCAAACTAATCGACAGCGTCACAACAACATCGAACGATGATTATGAAAGTGAACCTTTAGGCTCTGCTggaattcaaatcaaaaacttaTGCAAATCCTTTGGATCTTTCAATGCGGTCAACAATTTaagtttgaatatttttgaagatCAAATCACAATTCTGCTGGGATTCAACGGCTCAGGAAAAACCACTTCCATGAATATAATGACAGGAATGCTTCCGCCAACAAGTGGAACTGCGATCATAGACGGAAAAGATATTCGAACGCAAACTGATGAAGCTAGACGATCGCTAGGACTTTGTCCACAAAAAGATGTTTTGTTCAGTGATTTGACAGTTCGCGAGCAcatcattttcttctgtcGGTTGAAGGGAATGAAGGTGAACAGAGAAATCGAAGCTGAAGTTGAGAAATATACGAAAGCTCTCAATCTAGAGGATAAACTGAACGAGCGAAGCAAAACTCTTTCTGGTGgaatgaaacgaaagctCAATACAATTACAGCTTTGTGTGGTGGATCAAAAATCGTGATTTGCGATGAACCGTCATCAGGAATCGATGCTGGGGCCAGAAGAGACTTGTGGGATCTTCTGATTCAAGAGAAGAGAGGAAGAACTATTTTATTAACAACACATCACATGGACGAAGCCGAAGTTTTAGGAGACAGAGTCGCGATTCTCAACGAAGGAACTTTACAAACTGTTGGATCAACTTACTTTCTTAAGAAAAAGTTCGGAAGTGGTTATCGATTGACGTGCGTCAAAAAGCTTGGATGCGACTCAAGAATAATTCTTGACattcttcaaagctttgcaCCAGACGCCAAACTTATCTCCGATGACCAAAcagaaatcgttttcattcttctcgagaaagacatttcaacgtttgagaatatttttaagacGCTCGAGGATGATTctgataaattgaaaatttcctcaTTTGGTCTCTCGATCACAACGCTTGAAGATGTTTTCCTTAGAATTGGACGCGAGACATCAACAGCAAGAAATAACCAAAATCAGTTTATGgtcgaaacaaatttcgaTCCAACCGCAGAAGTTAAAGGAATcacgaaattcttttatcaaATCTGGGCGATGACTttaaaacacattttcttccttcggAGAAATTATCAACTCTTCATTTGGTTAATTTTACTTTCCGCTTGgttcgttttcatttcgatgaaTTCTTACACTCCACCGAGTGATGAAGTTGGGAACTTTGGTGAAGTCATTGCAATCCTGagtctcttcttcttcgcccTTTCTTATTGGTCAACATTATGCGTGAACTTGAAGATCAAAGAGCGTAACACGGGcgcaaatcttcttcaattcatCTGCGGGGCTAATCGAATTATATATTGGATCACTAGCTTCATTCTCGACTGGATTATCTTCATGGCCGCAATGTTAATTATTCTTGGAGTTATCGTGGCGTTTCAACTTGACAACTTCTCAACATTAGAACAACTCGGCCCATTGATTATAATTTTAACCGGTTACAGCTTCGCAGCACTGCCCGCAGTTTATTTGGTCTCTCGATTTTTCGAGAAGCCAGGAAAAGGAGAAGAGATTATACCGTTAATTGTGATAATTTGTGCTGCGTTTTATTCAGCTTatgttttccttcgattTGGAGACGATATTGCTAACATATTCGCTGACATTCTATTTTGGATTGGACTCTTTATTCCTCCATATTCTGTCGTGAATTGCTTCCACAAATATTTCACCAACGCAATATCCGAAACATTACcaaacattttaagttttgatGAGGATGGCATCGGAATAAATTTGGCATTCTACGTCTTATCaggaattattttcttatcaatcaaCATACTCCTGGATTATGGAATTATCAACAAGATTCGAtatattttgatgaaaaacagGAAACATAATTTGAAGCCGGTGAATAATTTGGATGACGATGTTCAAGCTGAAGTCGATAAAGTTCGAAGTTTGGCTCCTTCGGCTATttcaaaacgaaatcttGTTCTTCAAGGACTCACAAAGTTATACAAAAAGCTCGTCGCGGTCAATCAAATCTATTTAGATGTGGAACCGTCGCAATGCTTTGGATTGCTTGGCGTTAATGGAGCAGGAAAGACATCAACTTTCAAAATGATGGTCGGAGATGAAGTGATCACATCTGGAGATGCTTTTATGCGAGGAATGAGTTTAAAGAATCAAATCGACTCGAATTACAAAAGTTATTGCCCTCAGTTTGATGCTTTATTGTTAGACTTGACGGGAAGAGAAACTCTTCGAATCTTCTGCTTATTACGAGGCATTAAGACATCTGACATCAATTTTGTGATTAACAAGGTTTCCATCGATTTAGATTTCAATGAACACCTCGACAAAAGATGCAAAAACATGAGTGGCGGTAATAAAAGGAAGCTCAGCACTGCAATTGCATTGTTAGGTGATCCgtcattgattttcttagATGAGCCGACGACTGGAATGGATCCAATGGCtaagagaaaactttgggATGTCGTAacagcaaaaagaaattctggAAAATCAATCGTTCTTACAAGTCATTCAATCGAAGAAGCTGAAGCACTTTGCACAAGATTAGCAATTATGGTCGCTGGAGAGTTTAAATGCCTGGGCTCCGTTCAACATCTGAAGAACAAATTTGCCAAGGGATTTGTTTtaacaatcaaaatgaatcaCGACGATGATGCACTATTGGCGACCATTGACGCTCGAGttaaaaacgattttccagcagcaaaattaaaagaacGATATCTGAAGCTTTTGACTTTCCACTTGACAGGAGAGTTGATGTGGTCTCGTGCTTTTGGTGATGCAACGAATGAATCATATTTCCTTCGAAACTACACAATTCCTAACGAGAACGTAAAGTGCCTCGAATGCAATAAAGTTCTCGTTCGAAAGGAATCAATGAAACGTCATATGGAACTTGTTCACTCGGAGAGACAGACTTTCTTCTGTGACAAATGTACAGATGAATTTAAAGATTCTCGAACACTTAAATTTCACATCGAAAAGCATCACTCTGATGAAATGCAGGAGAGAAAGATTATTAGACGACGGAAGACAACTAAAGCTCTAACATGTGAAGATTGCGGTGAAATAGTTATCGGACGAAAGGATCTGCTTGCTCATCGATGGTTGACACAtctaaactttaaaatttacgaTAAATCTCGTTATCATTGTTTAATCTGCAAGCAAGTGCTCAAGTGTCGCATGTCTGCAAAAAGACATCACATTCAAGTTCATCAACATGGAAAGTTATTAGTGAGAACATGTCGTGTCTGCAGTCTCAGTTTTAAGCTGTACGATGATTTCAAAGCTCACATCGAGGAATATCATCAtcatgaaaacatttgtttgatttgtgGCGATagatttgaacttttctcagAACTGTTTGCTCATGAAAAATCTCATCGGAGTGTGCCAGaggatgaaaagaaatatttttgtgatcTTTGTGGTTGGAGGGCTCagcagaaaatttcaatcgagaATCATATGGTGAAACAACACGGCGGATTGAAGAAACAATATCAAGCGACATGTGAGTTCTGTGGCCAATCATTCAGTTGTTATCAATCGTTTCACACTCATCGGAAGAATCACTTCAGAGAATTCAATAAGATCGAATGCAGCTATTGCGACAAATCATACACAAACCTTCGAGATTTAAAGAATCACGAAGAGAGTCACATCAATCGAGAAGataaacttttccgttGTGAATACGATGGATGTACTCGCCAATACAATTTGTATCGAAGCTATCGATGGCATGTGAGATACACACACGAGCAGGTTCGTAATAAATGCAGGATTTGTTCAGTAGTTCTTTCATCTCGAGAGAAGCTGATTGCTCATGCTAACGAGCATCATCCTGAGCAACGACGCTTCCGGTGTAATCGTtgtggaaaaactttcacatcTCAATCTTCAAACATCAAACACATGAAAAACTGCGAACCAACGACGTTATcgtga
- Protein Sequence
- MIIVFSMFFSVGNLINSVAVERESQLKELMKIMGLSSFLHWSSWFILVFIKLLISFTLVVILLKFDVVNQDPMFGMSNFLIVWIFFVIYITAVISLCFFIGAVFKKPTTATNIGVMLFFATIIPYFQFTQYFSSLHYAVKFLFCLPINTGLGEGIALILRFEMGGDGIQFSNFFTRDDTGFSFAEIILVMVVAIFIHIGLLIYVENVFPGGTGNAKPWHFPFSSCFKRENEKIKLIDSVTTTSNDDYESEPLGSAGIQIKNLCKSFGSFNAVNNLSLNIFEDQITILLGFNGSGKTTSMNIMTGMLPPTSGTAIIDGKDIRTQTDEARRSLGLCPQKDVLFSDLTVREHIIFFCRLKGMKVNREIEAEVEKYTKALNLEDKLNERSKTLSGGMKRKLNTITALCGGSKIVICDEPSSGIDAGARRDLWDLLIQEKRGRTILLTTHHMDEAEVLGDRVAILNEGTLQTVGSTYFLKKKFGSGYRLTCVKKLGCDSRIILDILQSFAPDAKLISDDQTEIVFILLEKDISTFENIFKTLEDDSDKLKISSFGLSITTLEDVFLRIGRETSTARNNQNQFMVETNFDPTAEVKGITKFFYQIWAMTLKHIFFLRRNYQLFIWLILLSAWFVFISMNSYTPPSDEVGNFGEVIAILSLFFFALSYWSTLCVNLKIKERNTGANLLQFICGANRIIYWITSFILDWIIFMAAMLIILGVIVAFQLDNFSTLEQLGPLIIILTGYSFAALPAVYLVSRFFEKPGKGEEIIPLIVIICAAFYSAYVFLRFGDDIANIFADILFWIGLFIPPYSVVNCFHKYFTNAISETLPNILSFDEDGIGINLAFYVLSGIIFLSINILLDYGIINKIRYILMKNRKHNLKPVNNLDDDVQAEVDKVRSLAPSAISKRNLVLQGLTKLYKKLVAVNQIYLDVEPSQCFGLLGVNGAGKTSTFKMMVGDEVITSGDAFMRGMSLKNQIDSNYKSYCPQFDALLLDLTGRETLRIFCLLRGIKTSDINFVINKVSIDLDFNEHLDKRCKNMSGGNKRKLSTAIALLGDPSLIFLDEPTTGMDPMAKRKLWDVVTAKRNSGKSIVLTSHSIEEAEALCTRLAIMVAGEFKCLGSVQHLKNKFAKGFVLTIKMNHDDDALLATIDARVKNDFPAAKLKERYLKLLTFHLTGELMWSRAFGDATNESYFLRNYTIPNENVKCLECNKVLVRKESMKRHMELVHSERQTFFCDKCTDEFKDSRTLKFHIEKHHSDEMQERKIIRRRKTTKALTCEDCGEIVIGRKDLLAHRWLTHLNFKIYDKSRYHCLICKQVLKCRMSAKRHHIQVHQHGKLLVRTCRVCSLSFKLYDDFKAHIEEYHHHENICLICGDRFELFSELFAHEKSHRSVPEDEKKYFCDLCGWRAQQKISIENHMVKQHGGLKKQYQATCEFCGQSFSCYQSFHTHRKNHFREFNKIECSYCDKSYTNLRDLKNHEESHINREDKLFRCEYDGCTRQYNLYRSYRWHVRYTHEQVRNKCRICSVVLSSREKLIAHANEHHPEQRRFRCNRCGKTFTSQSSNIKHMKNCEPTTLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -