Sate001077.1
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- -
- Assembly
- GCA_033063855.1
- Location
- CP093829.1:5534090-5535316[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0017 0.069 13.6 0.2 1 21 62 82 62 83 0.95 2 11 0.0097 0.4 11.2 0.8 3 23 134 154 133 154 0.96 3 11 0.00046 0.019 15.4 2.3 1 23 158 180 158 180 0.97 4 11 0.06 2.5 8.7 0.4 1 23 193 216 193 216 0.91 5 11 7.8e-06 0.00032 20.9 2.7 1 23 221 243 221 243 0.98 6 11 0.54 23 5.7 1.4 2 23 247 267 246 267 0.95 7 11 0.00029 0.012 16.0 1.0 1 23 273 296 273 296 0.98 8 11 0.0067 0.28 11.7 3.0 2 23 302 323 301 323 0.97 9 11 0.0057 0.24 11.9 1.8 2 23 327 347 326 347 0.97 10 11 4 1.7e+02 3.0 0.8 3 23 356 378 354 378 0.92 11 11 0.05 2.1 8.9 4.0 1 21 384 404 384 406 0.96
Sequence Information
- Coding Sequence
- ATGGAAGAAGTTTATTCTCAAAAAATCGTCGATAATATCAAGCATGAGCCAGAAGTTCACCTCGTTTGTTATCTGCCAAGTGACCCAGAGACTAAAGATGAACCTGAAGTGAAGGAAGTGGAGATTTTGTTGCGGAAATTCGACTACTCATGGCGAACTTCTGCCAAGTTGTTCGaatcatatttttcttgtggAAAGTGCGGATATGCAAGTAAGAAGTCAGGAGGCTTgaagaatcatttgaaaatttgtgaGACTCTTAAGAAGTGCGAAAATTGCCGTTTTAAGACCAAATCGGAGAATATCATCAAATGTCGCTTCTGCGATCAACAATACAAATGCAATTTTTGTAAGACGATTCATATTTCGCAAGTTCATCGTAAAGACTCATATTGGCTATGCAGCATTTGTGATTATAGAACTTCAAATAAAGACAATCtgagttttcattatcagattcacttgaagaatttttcatgctcAACTTGCGAGCAAAGGTTTTCACTTAAGCAATCgttgaaaattcatcaacagcagcatcGACATGGATTTTACGCAACGCAGCCCGAGATAAAATTTGAGTGCGCGACTTGCATTCGTTcatttgcaactaaaatTGGACTGCGCCAACATGAAAcgaattttcacaaaaatctCATATTCCGTTGCGATATTTGTGGAAAAATTACGAACTACAAAAATCATCTCCGACAACACATGCAACTTCACTTCAAAGTTCGTTGTCCAATTTGCTATCGGTTGTTGACTGAGCGTTGTCTTCAGAGGCACATTGAAAGGCATACGACCATTGCAAGCTTCAAATGTGATGATTGTGAAAAATTTTACGTCAACCTGCAAGATTTAATCGGACATAAAAAGACATTTCACGAGATTCAGCAAGTCCAGTGCGATTTGTGTCAAAAGATTTGCAAGAACAAACTTCGGTTGAGAACGCACATGGACAGTCATTTAATAGTTTCATGCCCAACTTGCAGCAAGTCGATCCataaaaactatttgaaCCAGCACATGAAGATTCATTCAGCAAGACGTGAATCGTTGGCTTGTGATAACATGAAATGccatcaaatgtttttaagtATCGAAGAATTTGAAGAGCACAAGAAGATTCACATCGGACCAGAAATTTACAAATGCCCAAACTgcaattttcaatcgaaagcATTGCAACAATTGCAACGACACATGAAATGTCACCGAGCTTAA
- Protein Sequence
- MEEVYSQKIVDNIKHEPEVHLVCYLPSDPETKDEPEVKEVEILLRKFDYSWRTSAKLFESYFSCGKCGYASKKSGGLKNHLKICETLKKCENCRFKTKSENIIKCRFCDQQYKCNFCKTIHISQVHRKDSYWLCSICDYRTSNKDNLSFHYQIHLKNFSCSTCEQRFSLKQSLKIHQQQHRHGFYATQPEIKFECATCIRSFATKIGLRQHETNFHKNLIFRCDICGKITNYKNHLRQHMQLHFKVRCPICYRLLTERCLQRHIERHTTIASFKCDDCEKFYVNLQDLIGHKKTFHEIQQVQCDLCQKICKNKLRLRTHMDSHLIVSCPTCSKSIHKNYLNQHMKIHSARRESLACDNMKCHQMFLSIEEFEEHKKIHIGPEIYKCPNCNFQSKALQQLQRHMKCHRA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -