Sate015016.1
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- Zfa_2
- Assembly
- GCA_033063855.1
- Location
- CP093831.1:28380659-28381882[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.092 3.8 8.1 0.1 1 21 60 80 60 81 0.94 2 11 1.2 50 4.6 3.1 2 23 131 152 130 152 0.93 3 11 1.8e-05 0.00073 19.8 2.6 1 23 156 178 156 178 0.97 4 11 0.0012 0.051 14.0 0.5 1 23 191 214 191 214 0.95 5 11 0.0001 0.0043 17.4 1.9 1 23 219 241 219 241 0.98 6 11 0.34 14 6.3 0.2 3 15 246 257 244 265 0.72 7 11 4e-05 0.0017 18.7 0.9 1 23 271 294 271 294 0.94 8 11 0.00019 0.0079 16.6 0.8 2 20 300 318 299 321 0.94 9 11 0.12 4.9 7.8 0.3 2 23 325 346 324 346 0.90 10 11 0.017 0.69 10.5 4.2 2 23 354 377 353 377 0.96 11 11 1.1 44 4.8 2.6 1 22 383 404 383 407 0.89
Sequence Information
- Coding Sequence
- atgGCCGACTATTCTCAAGTTATCGTTGACAACATCAAACACGAACCCGAAAGACATTTCGTCTTCATTATGCCGGACGATCCAGAGCCAGAGTTTGAAGTaaaggaagtgaaaatagttttaggAAAATTTGACAAAACTTGGAAGAAACATCCAGCTAAGATGTTTCAATCTTATTTCGTTTGTGGCAATTGTGAGTTTGCGGCTAGGCAATCAAGTACATTGGGTAAACATTTAGAAACTTGCAAAGGTTTtcaaaaatgtggaaaatgtaatttgatgagcaaatcaaaagaaattgatgaatgtCGCTTTTGCGATCTTAAATTTGACTGCAGCAACTGCAAAACGACTCACATCAACGAAGATCATCGCAAGGGAATTAGTTGGCATTGCACTAAATGcgaattcaaaactttaaacaaaGATAGtcttcaaaatcattttcagatTCATGTGAAAAATTTTTACTGCGAAACTTgccaaaaaacttttgcccaaaaagaaagttttaaaattcatcagCAGCAGCATCGCCACGGAGTTTTCGCTTTGGAACcacaaacaaagtttgaatGTGGATCTTGCACTCGATCATTTGCAacgataaaaagtttaaaacagcatgaaaataatattcaTAGCGAAAAGAAGTTCCATTGCGATGTTTGTGGTAAGATCTTCAAAAATAAGATGATTCTTCGGCAGCATATTCAATCTCATTGCAAAGTTGCTTGTCCGATTTGCCAGCGAATGTTCTCTGAGCATCGTCTAACGCCACACATTGATCAACATTCGTCCACAACAAAGTTCAATTGTGAAGTTtgcgataaagttttctccaaGAAGATTAATTTATACCAACACAACTTAAGAGATCATGATAAGAATGAAGTTCAGTGCGACTTGTGTGACAAAAAGTTcagaaacaaatatttaattagaCAACACATGCcaaatcatttgaaagtttcatgtcCAATTTGTAAAAGATCAATTAGTAAACATACTTTGAAAGGACACATTGCAGCGCTTCATCCATCAGGAGACAAATCTTTGCGTTGTCACTTTCAGAAgtgtaaacaaaagtttgaaaatatcaaagaactgaaaaagcatgagaaaattcacatcggaCCCAAATGTTACAAGTGTCCGACCTGCAATCATCAAATGCCAAAATTCCGTGATATGAAGCAACACATGGAAAGCAAATCTCACTga
- Protein Sequence
- MADYSQVIVDNIKHEPERHFVFIMPDDPEPEFEVKEVKIVLGKFDKTWKKHPAKMFQSYFVCGNCEFAARQSSTLGKHLETCKGFQKCGKCNLMSKSKEIDECRFCDLKFDCSNCKTTHINEDHRKGISWHCTKCEFKTLNKDSLQNHFQIHVKNFYCETCQKTFAQKESFKIHQQQHRHGVFALEPQTKFECGSCTRSFATIKSLKQHENNIHSEKKFHCDVCGKIFKNKMILRQHIQSHCKVACPICQRMFSEHRLTPHIDQHSSTTKFNCEVCDKVFSKKINLYQHNLRDHDKNEVQCDLCDKKFRNKYLIRQHMPNHLKVSCPICKRSISKHTLKGHIAALHPSGDKSLRCHFQKCKQKFENIKELKKHEKIHIGPKCYKCPTCNHQMPKFRDMKQHMESKSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -