Basic Information

Insect: Smittia aterrima
Gene Symbol: -
Assembly: GCA_033063855.1
Location: CP093830.1:12373088-12376676[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0093 0.39 11.3 0.9 2 23 132 154 132 154 0.92

2 14 2 82 3.9 2.6 1 23 160 183 160 183 0.89

3 14 4.3 1.8e+02 2.9 0.1 1 23 191 214 191 214 0.87

4 14 0.17 7.2 7.3 0.1 2 23 349 371 348 371 0.89

5 14 0.0016 0.066 13.7 2.1 1 23 410 432 410 432 0.97

6 14 0.072 3 8.5 0.0 3 23 441 461 439 461 0.95

7 14 0.0036 0.15 12.5 0.3 1 23 521 544 521 544 0.96

8 14 7.8 3.3e+02 2.0 1.7 1 23 560 585 560 585 0.92

9 14 2.7 1.1e+02 3.5 1.5 3 19 622 638 620 641 0.76

10 14 0.00029 0.012 16.0 3.5 1 23 665 687 665 687 0.97

11 14 0.003 0.12 12.8 5.8 2 20 697 715 696 718 0.95

12 14 0.00013 0.0055 17.1 0.3 2 23 725 747 724 747 0.94

13 14 8.8e-05 0.0036 17.6 1.3 3 23 755 775 753 775 0.97

14 14 0.012 0.48 10.9 0.6 1 23 781 806 781 806 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0093	0.39	11.3	0.9	2	23	132	154	132	154	0.92
2	14	2	82	3.9	2.6	1	23	160	183	160	183	0.89
3	14	4.3	1.8e+02	2.9	0.1	1	23	191	214	191	214	0.87
4	14	0.17	7.2	7.3	0.1	2	23	349	371	348	371	0.89
5	14	0.0016	0.066	13.7	2.1	1	23	410	432	410	432	0.97
6	14	0.072	3	8.5	0.0	3	23	441	461	439	461	0.95
7	14	0.0036	0.15	12.5	0.3	1	23	521	544	521	544	0.96
8	14	7.8	3.3e+02	2.0	1.7	1	23	560	585	560	585	0.92
9	14	2.7	1.1e+02	3.5	1.5	3	19	622	638	620	641	0.76
10	14	0.00029	0.012	16.0	3.5	1	23	665	687	665	687	0.97
11	14	0.003	0.12	12.8	5.8	2	20	697	715	696	718	0.95
12	14	0.00013	0.0055	17.1	0.3	2	23	725	747	724	747	0.94
13	14	8.8e-05	0.0036	17.6	1.3	3	23	755	775	753	775	0.97
14	14	0.012	0.48	10.9	0.6	1	23	781	806	781	806	0.90

Sequence Information

Coding Sequence: ATGAATTGGTGTAGATTATGTGGCGAGGAGAAGAGTCCTCTCGATTTTGTTGTCGAGCTAAGTGATAAAGCAAACTCAAACTGGATATATTCAGAGTTAATCGAATTTCATACTCgcaAGCCAATCAAGAGAAAGAATGACGAGACTCAAAATGTTGGAGATTTGATCAAATTGGAGTTTGTTGATCTTCCTCCTCTGAagcttgaaattgaatttctggAATCGGAAGTTCTTTTAAATGGGGAAGTTCCTGACTCAGCCAGAGAAACTTTAAGTCTAGAAGTTTGGTCAAATTTCCTGTCAAATTGTGAAGCATGTCAAGTGACGGTTGACAACTTTGTTGACCTACATTTACACCACGAGAACGCTCACAACAACGAGGATGTTGAAAATTCATGCAAACTCTGTGGcaagaaatttgaaagagTCTTCGAGTATTTGAATCATTTAGCAAATAAACACGCCGAGCACCTCAAGCACTGCTGTCTTGTTTGTGATGGAATGTTTTATGATCTAACATCACTgctgaatcatttttctcaagAACATAACAAAGAATCACTTCAGATATTTCAATGCTTACTTTGTGGAGAGTTTAACGATTCACTCGCAGCTTTGCGTGTTCATACGACTGAGAAACATCAAAGGCAGATAGAAAACTCCTTCAACAAGAGTGATGATGGAAGTTGTGAATCAAGAACAAGATTGAAAAGAAGTAGAAGAGATGGTCCAACTGAATATATTGAGAGGTCGGACGAAGAACATTCAAGCTCCGATGAAGATTCTGATGATAAACCAAAGCGAAATCATGAAAGAAGTCGAAAGTCTCGAGGAAGTAAAAGAGGAAACACAACAgtacaaagaaaaatatttggacCGGAAATCGATTcttttgagaaacttttcgctgATGAAATTAAAGGTCTCTCGCAGTTCAAATCTTCGCTACATTTGAACGTTAATGACGAATTTATGCTTCCAAATGGAGAAATCCCTGAAGAATACGCTCTCGCCGTTAGTGACATTCGTTGGAAAGACTTGTTGAGCTGTGGAATCTGCAAAGTAAGCTACAGCGACATAGGCGATCTCCTTACTCATGCCGACAACAAACACAGCACGcgatcaaaactttttcactgTCAAAGCTGCGAAGGAGAATTCAGTGCCGTCTGCGAAAGTCCTTTAATTAATCACATGATAGAACGACATTATTACGAGCACTTAAAGTTTTGCTGTCTAGTTTgctcgaaaatgttttacaatCTTCCACTTCTAATGGCGCATTACAAAACTCAtacgaaaaagtttgaggTTCTCGCGTGTTTGATTTGTGGATGGTACGCAAAGACATTGGACGACTTGAAAGAACACAAGAGCATTCACTTGTCGTCGGAGAAGTCGGAAAATCAAGAACTCtgtgaaaaagtttacgaAAGATTCAAGAGTGGACTGGAGCCATCTGGGCGTAATCACTGTGTCGCTGAGTATGAGAGAAATCCTGATGGGACTGTGACAAATGAATGCCAGCAGAGATTTAATGTTGATTGGAGTTTCGGACGCTATGACTGCTCAATCTGTGATGTTCAATTCTCAAATCCTTTCGAAATATTCGTTCACTATCGCCTTAAACACACTGTCGCTAACATCAGCAACCCCAAGGATATTTCTAagaagatttattcgtgTTCGCTATGCACTGACAAGAAGGATTTTACGAATCTCTTCACGTTCGTCAATCACGCAACGTCGAAACATTTGGATAAtgcaaaatttgtttgcatttGTTGCTCGAAAGTATTTTGGAATTATCTCGCTCTTGCTGATCACTATAAAGATGTTCATACGACGTTTCCTTGCATTTTCTGTTGTCATTGCGGAAAGATTTTCATGAACGTGTCAGTTGCGTCTTCTCACTTCAGAACGCTTAATCTCTTCCGAACGCCTGAAGAACGAAAACTGCTCAAGGAAGGAAAGATTTTAGATGAGATGAGTCACATCTGTCATGTCTGTGCACGAAGCTTCAAGAATCGAGGGACTTTACTGAATCACGTGAAAACTCATGAGACCATCGAACCTTCTGAGCTGTTGCAATGCCACATTTGCAGTAAATTTTACAAGAACAAATACAAACTCCAGCAACACATGGTTTGCCATGAAGATCTTCGAAGCTGGAAGTGCAAAGCTTGCGGTCAAGCGTTCAATTacaagaaacttcttcaacgACATATTCAAGCGGTCCATGAAAACGAGCGAGCATTCGGATGCACCTTCTGTGAAAAGCGATTCAACTCGAAATATGATTTAAAAGTTCACGTTCGTCTTCATACTGGTGAGATGCCGTATCAATGTCCAGTTCCCGATTGCGATGCGAAATATCCAGCTTGGAGTAATCTCTTTAAACATTGTCAGTCTCGGCACAAACTTGATATTCGTTCTGATGCCTTTGTCAACGAACGAGTTGAGACTGAAACAATAGAAAAAGGCTTCAGTTGCCATTTAGTCGTCAACGTGTTAATGTGCTCGagttattttaaaatgtctAGTAAACTACCAAAACCAGCCAAGGAATGCTTTATAACTCCTTTAAGGAACGCGAAACCCGGACCAAGAACGCCAAATCAAGTTTCGGTTCCAACGCCATCCACAAATAAGAAATACGCTCacattcaatcaaaagttattAGTCGTTGGACGCCTCAAGAAATGCAGAAAGTTGGAGTCAAAAGGTTCTTTGAACGAAAAGGAGGTTCATCTGCTTCAACTTCAGCTTCGAGCTCTGCAGCCACTTCGCCAGACTTGGCTATGATGAGAACCTGTACGGAACATAGCATCTTTATTAACAGAGGTAAGCTGCCTCCTCGTCGACATCCAACTTATGAAATAATAGGAGAAGATTTTGCTGCAAGATTGAGAGAGCTTAAAGAAGGAATAAGCAAGAATTGTAATGAAGCTCCTGAAGTTATCATATCAGAGCCAAACAACATTTAG
Protein Sequence: MNWCRLCGEEKSPLDFVVELSDKANSNWIYSELIEFHTRKPIKRKNDETQNVGDLIKLEFVDLPPLKLEIEFLESEVLLNGEVPDSARETLSLEVWSNFLSNCEACQVTVDNFVDLHLHHENAHNNEDVENSCKLCGKKFERVFEYLNHLANKHAEHLKHCCLVCDGMFYDLTSLLNHFSQEHNKESLQIFQCLLCGEFNDSLAALRVHTTEKHQRQIENSFNKSDDGSCESRTRLKRSRRDGPTEYIERSDEEHSSSDEDSDDKPKRNHERSRKSRGSKRGNTTVQRKIFGPEIDSFEKLFADEIKGLSQFKSSLHLNVNDEFMLPNGEIPEEYALAVSDIRWKDLLSCGICKVSYSDIGDLLTHADNKHSTRSKLFHCQSCEGEFSAVCESPLINHMIERHYYEHLKFCCLVCSKMFYNLPLLMAHYKTHTKKFEVLACLICGWYAKTLDDLKEHKSIHLSSEKSENQELCEKVYERFKSGLEPSGRNHCVAEYERNPDGTVTNECQQRFNVDWSFGRYDCSICDVQFSNPFEIFVHYRLKHTVANISNPKDISKKIYSCSLCTDKKDFTNLFTFVNHATSKHLDNAKFVCICCSKVFWNYLALADHYKDVHTTFPCIFCCHCGKIFMNVSVASSHFRTLNLFRTPEERKLLKEGKILDEMSHICHVCARSFKNRGTLLNHVKTHETIEPSELLQCHICSKFYKNKYKLQQHMVCHEDLRSWKCKACGQAFNYKKLLQRHIQAVHENERAFGCTFCEKRFNSKYDLKVHVRLHTGEMPYQCPVPDCDAKYPAWSNLFKHCQSRHKLDIRSDAFVNERVETETIEKGFSCHLVVNVLMCSSYFKMSSKLPKPAKECFITPLRNAKPGPRTPNQVSVPTPSTNKKYAHIQSKVISRWTPQEMQKVGVKRFFERKGGSSASTSASSSAATSPDLAMMRTCTEHSIFINRGKLPPRRHPTYEIIGEDFAARLRELKEGISKNCNEAPEVIISEPNNI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -