Basic Information

Insect: Smittia aterrima
Gene Symbol: L
Assembly: GCA_033063855.1
Location: CP093830.1:8619218-8629661[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 2.9e-05 0.0012 19.1 2.0 1 23 119 141 119 141 0.98

2 16 0.12 5 7.8 4.2 1 23 147 169 147 169 0.98

3 16 5.8e-06 0.00024 21.3 3.1 1 23 175 197 175 197 0.99

4 16 7e-05 0.0029 17.9 0.5 1 23 203 225 203 225 0.98

5 16 0.45 19 6.0 0.3 2 23 279 302 278 302 0.89

6 16 0.04 1.6 9.3 2.4 2 23 326 348 325 348 0.95

7 16 0.12 5.1 7.7 0.6 1 23 413 435 413 435 0.95

8 16 0.0054 0.22 12.0 1.5 1 23 488 511 488 511 0.91

9 16 0.026 1.1 9.8 0.7 1 23 514 537 514 537 0.94

10 16 6.6 2.7e+02 2.3 2.5 2 23 541 563 540 563 0.95

11 16 0.032 1.3 9.6 2.6 1 23 596 618 596 619 0.96

12 16 0.027 1.1 9.8 0.3 2 23 790 814 789 814 0.93

13 16 0.064 2.6 8.6 0.0 1 23 820 842 820 842 0.95

14 16 0.067 2.8 8.6 1.6 2 23 849 870 848 870 0.98

15 16 0.22 9 6.9 0.2 3 23 985 1005 984 1005 0.97

16 16 2.9 1.2e+02 3.4 4.8 2 23 1015 1036 1015 1036 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	2.9e-05	0.0012	19.1	2.0	1	23	119	141	119	141	0.98
2	16	0.12	5	7.8	4.2	1	23	147	169	147	169	0.98
3	16	5.8e-06	0.00024	21.3	3.1	1	23	175	197	175	197	0.99
4	16	7e-05	0.0029	17.9	0.5	1	23	203	225	203	225	0.98
5	16	0.45	19	6.0	0.3	2	23	279	302	278	302	0.89
6	16	0.04	1.6	9.3	2.4	2	23	326	348	325	348	0.95
7	16	0.12	5.1	7.7	0.6	1	23	413	435	413	435	0.95
8	16	0.0054	0.22	12.0	1.5	1	23	488	511	488	511	0.91
9	16	0.026	1.1	9.8	0.7	1	23	514	537	514	537	0.94
10	16	6.6	2.7e+02	2.3	2.5	2	23	541	563	540	563	0.95
11	16	0.032	1.3	9.6	2.6	1	23	596	618	596	619	0.96
12	16	0.027	1.1	9.8	0.3	2	23	790	814	789	814	0.93
13	16	0.064	2.6	8.6	0.0	1	23	820	842	820	842	0.95
14	16	0.067	2.8	8.6	1.6	2	23	849	870	848	870	0.98
15	16	0.22	9	6.9	0.2	3	23	985	1005	984	1005	0.97
16	16	2.9	1.2e+02	3.4	4.8	2	23	1015	1036	1015	1036	0.95

Sequence Information

Coding Sequence: ATGACGAGACGAAAGCAACCGAAGCCCAGAGCTTGTCTAACAAAACATTCCGATAATGCAGATACATTGAACGAGAGTCTCGTTACACCAAGCGAGGATAACCAGAAGGAAATATCACAAGACAAAGCAAGAAATCATCAACATGCGGCTGAGGGTGTTGATCACGATTATGAATCAGAGAACTCGGATTGCGATAGCGTCGCCACCTTCTCATCAGAGCTCTACTCGTCTCACACATCCATCAGCTTTCCATCGTCAAACAACAGCACATccgaaatggaaaataatgaaGTCGATGTCGACGGGCAGTTCAAGAAGGAACGTAAGGAGAagacaaagtttaaaagcaGTTCGTACAAGTGTCAGTTCtgtgaaaaatctttcccGCGGCTCGGATATCTCAAGAAACATGAACAGAGTCATGAAGACTACATGCCGTTCAAGTGTCCCGTTTGTTTGAGACTGTTCAAGCATAAGCGTTCGAGAGACCGTCATCTAAAGTTGCATACTGGAGATCGTCGCTACAAATGTTTGTACTGCGAGTCAGCTTTTTCGAGAAGCGATCACTTGAAGATTCATATGAAAACTCATGACAGCAAGAAAGCATTTCAATGTAGTTTCTGTAATCGAGGCTACAACACAGCAGCTGCTTTAACTTCTCACATGCAGAATCACAAAAAGCAAGCAGAGCATCGAAATGATTCGCCTTTCAACTTCAgCATGAAATCGTCGGAATCCTCGTCGACTTCAATGATGgataagaaaagattttccgaACTTGTTTCGccaaaatctttcaaatcaGAAGGACATTCCGATTCGCGATCGCAAATTCGTTGCTTTTATTGCACAAAGTCGAACTTTGTGTCGCTTGAGCAGTTAAATATTCACATAAACATAATGCATAGTCATAAGTTCGCCAAAGACAAGAAGAACGAGCTCGACAAGGAGCAAAGctcatcatcgtcgtttatttcatgtgaattttgtttgatgaagttCTGTACGACTGAAAAGTTACTGAAGCACATCCGACAAATCCATGAAGAGAAGTTAAAGGAACGTGAGAAGATTGCGGAaccaattttaattgataatagcaagaaaattattgacgGCGATGAAGATCAACCAACTGACTTAAGTCAAcgattttcaaagaaaataaaaattgaaagctcatCGATATCCAAAGTTCCTCATCCACCAATGAAATCACCTCTCGCTTCCGAAGTCTTCTTATGTAACCAGTGCAATGCTTCATTGCCGAACTTTGAACTGTTTCGGCTTCACCTAAAAAGTCACTTAGAAGAGAATTACAGTGCCCGCAACAACGAGCACTTCGAAATGAATAATGCATTCTATAACGCGCAGAAGAAGTTCATTTGTCAACAGTGCCGAGATGTTGTGTTTGATAATCGTTTTGAATATGATCAGCATGTGGAAAAGCATTTCACGGAGTTTCTGTGTCGCGATTGTGACGACTGCTTCACCAAAAGCGACGATTTGCAAAACCATTTAATTGAGAATCACGTCTCCTTCAAGTGTACGCTTTGTAATGAAAGCCTCGACTCGATTTCGTCGTTGAAAATGCATTTCGCATCGCGGCACTCAAACAAAAGGTGCTCTGCGTGCAGAGAGGATTTCGGATCAGACAGAGACTTTAAGAACCATATTCACTCAAAGCACAACTCGACTGATCTAATCAGATGCATTTTCTGTCGAGTTACATGTTCGTCAGAGCTTGAGatgcattttcatttcttatcAGCTCACGTCAAGCAATTCCGGTGTCCAGCATGTTCTGAATCGTTCCACGTTGAGTTCCTTCTTGATCGGCATCTTCAAACACATCACTCTGTGAAtgaaactcaattgaaatattcgGCCGAAAAGGAACTCGCGCTCTCtcatttaaatcttcaaaattatCGACCGTCGTTGATCGAGAGCGGAAAGTTTATGGCGAATAACGATTCAAAGCAACAAGATGGAGCTTTGATGGGAGGActtcattcaaatattttcgctttgaaCTCTATTTCGAATCAATACGCGAAGGGAATCGATTTAGCTTCATTGCATGAAAGTCTAAATCGAGCTCAATCAACGCTTGAAGACTCTCAGAATATTCGAGTTAAACATTTGTTCTCCATGACCAACAACGAAAGTATCGCGAAATCTTTCGCTGAAAGTCAAAACGCGTCGAAAAATCAAGTCGCAGTGACAAACGACAGGAATAACAATAAGAATGGAACTAGCAAGGacaagaatgaaattgttccGCAATTCAAAGAAATGATGGAAGCGCCTGCTGAGAAATCCAACCAAAATATTCACACAAACTCAAAATCAGGAGTTAGCTTGAAGTGCGCTTACTGTGAAGCACGAGAAGATTTCAAATCGAGAACTGAGCTTGAAAATCACATGAAAATTCAACATAACATTGCAGCGAAGCATAAATGTTCTATCTGCGATGAGGTTCTTCCATCACCAGCAgTTCTGGCTGAGCACAAGCTTCAGCACTGCAAAGTAATTTCgggaaaatgctttcattGCACGGAGTCAATTACCGATGTCAATGAATTCAAGCAACACATTCAGAGTCACAATATGAAGAATAAAACTATGCTGGAGCTTCCGGTTCATTGCATTTGCTGTCACCAGCTCTTGACGTCAGATTTCGAAATGAATCTTCATGCCAAGTTCCACACAAACTCAGCCAACGCATCAGCAAATAATGAAGAGCGAACTTGCGCTCTTTGCTTGAACATTATGGACCATGCGAAcgtgaagaaaatttgcaattcTTGCATGACTAAGCACAACTTCTCTCTCAGCGCAACGCAATCGACACAGAAGCAGCTTTGTAATTTGTGTAAAAACGTTGTTGACGCTGAGAAATTCCAGGATCATTTGATTGAGCACGAGATGGATAAAGGAACAGTTTTGTGTGCTGTATGCAAATCTATTTTTACATCCATTAATGGTCTTAAAGATCACCTTCGCGATCATAATTTATCAGCGACTGACTTGAAGGAAGTTTGCCCGAAGTGCAAGGCAAGGTTCTTATATCATTCGGAGCTCTCGCATCATTTGCACGAACATGACAATGACTCAAGTGTTGTTAAGATGGAAAGCGATAGCATCGAAACCATCAAGGAGATTAAggaagaagacgacgacgattaCATTGAAATCGAGAAAGTCCCTGAGAACTCCGTTTAA
Protein Sequence: MTRRKQPKPRACLTKHSDNADTLNESLVTPSEDNQKEISQDKARNHQHAAEGVDHDYESENSDCDSVATFSSELYSSHTSISFPSSNNSTSEMENNEVDVDGQFKKERKEKTKFKSSSYKCQFCEKSFPRLGYLKKHEQSHEDYMPFKCPVCLRLFKHKRSRDRHLKLHTGDRRYKCLYCESAFSRSDHLKIHMKTHDSKKAFQCSFCNRGYNTAAALTSHMQNHKKQAEHRNDSPFNFSMKSSESSSTSMMDKKRFSELVSPKSFKSEGHSDSRSQIRCFYCTKSNFVSLEQLNIHINIMHSHKFAKDKKNELDKEQSSSSSFISCEFCLMKFCTTEKLLKHIRQIHEEKLKEREKIAEPILIDNSKKIIDGDEDQPTDLSQRFSKKIKIESSSISKVPHPPMKSPLASEVFLCNQCNASLPNFELFRLHLKSHLEENYSARNNEHFEMNNAFYNAQKKFICQQCRDVVFDNRFEYDQHVEKHFTEFLCRDCDDCFTKSDDLQNHLIENHVSFKCTLCNESLDSISSLKMHFASRHSNKRCSACREDFGSDRDFKNHIHSKHNSTDLIRCIFCRVTCSSELEMHFHFLSAHVKQFRCPACSESFHVEFLLDRHLQTHHSVNETQLKYSAEKELALSHLNLQNYRPSLIESGKFMANNDSKQQDGALMGGLHSNIFALNSISNQYAKGIDLASLHESLNRAQSTLEDSQNIRVKHLFSMTNNESIAKSFAESQNASKNQVAVTNDRNNNKNGTSKDKNEIVPQFKEMMEAPAEKSNQNIHTNSKSGVSLKCAYCEAREDFKSRTELENHMKIQHNIAAKHKCSICDEVLPSPAVLAEHKLQHCKVISGKCFHCTESITDVNEFKQHIQSHNMKNKTMLELPVHCICCHQLLTSDFEMNLHAKFHTNSANASANNEERTCALCLNIMDHANVKKICNSCMTKHNFSLSATQSTQKQLCNLCKNVVDAEKFQDHLIEHEMDKGTVLCAVCKSIFTSINGLKDHLRDHNLSATDLKEVCPKCKARFLYHSELSHHLHEHDNDSSVVKMESDSIETIKEIKEEDDDDYIEIEKVPENSV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -