Sate003779.1
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- -
- Assembly
- GCA_033063855.1
- Location
- CP093829.1:19531540-19534262[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 9.7 4e+02 1.7 1.2 2 23 46 68 45 68 0.89 2 14 0.81 34 5.1 3.5 1 23 305 328 305 328 0.94 3 14 0.00043 0.018 15.5 0.2 2 23 444 465 443 465 0.95 4 14 0.28 12 6.6 0.3 1 23 470 493 470 493 0.91 5 14 0.0003 0.013 15.9 0.2 1 23 497 520 497 520 0.93 6 14 0.00023 0.0096 16.3 0.5 1 23 535 560 535 560 0.93 7 14 2.1 89 3.8 1.6 3 23 565 585 564 585 0.81 8 14 0.0012 0.051 14.0 0.6 1 23 591 615 591 615 0.98 9 14 9.8e-05 0.0041 17.5 0.3 1 23 621 643 621 643 0.97 10 14 0.00088 0.037 14.5 1.8 1 23 649 671 649 671 0.98 11 14 0.28 12 6.6 9.1 1 23 680 705 680 705 0.92 12 14 0.00095 0.04 14.4 0.1 2 23 755 779 754 779 0.92 13 14 0.0003 0.012 15.9 0.2 1 20 786 805 786 808 0.93 14 14 8.9e-05 0.0037 17.6 1.3 1 23 814 836 814 836 0.96
Sequence Information
- Coding Sequence
- ATGTCTCATCTGATTGTTGGTGACAACTGTGAGGCCAAATTTATAAAGAAAGAGCCATTTGAGACTTGTTTTGTGGTTGAGCCAAGATTTGCTGTTGCAAATTTTACTAAAAATGTCACCAGACATGAAATCTCAACTTGTCATCTATGCAAGAGAGCagagaaacttcttcgtGCTTTGTACAAACATATTCAAGCCAATCATCCAGATGACGGATcagaaacaatgaaaatatgcTCTGAACACTGTGCAGTTGGGAAAATGATTCAAGCCGAGATTGTTGATCATTTAATGTCACTTTACATCTCCTGCGAAACTTCATCAACTACATTGGAGACATGTGAAGAATGCACGAAACCTTCGTTGACAGAAATCAACGAACTCGCAACTTCACTTTGCCCAGGAGGAATGaaacatcaaagttttttgtttaatcattttaaaacGGATCACATCACAGATTTAACGCTTTACAACGAACAATCCATTGCAATGACAAGTTGTTTCTGCACTGACGGTCTCATCATTCAAACCGATCTAATAAACCACTTGCTAGCTCATCTTGTTGGAATTAATGACACCGATTGGATTAAACAAGAAGAGAATTGCGTTGATAGTTATGAAGAAACAGAACAAATGCCTttggaaattattgaaagatCTTTCTCCGAAGTATGCAACAAACAAGTTTCCTGTGATTGGCAGTTGAGAGACGAAGATGAAGAGTTGTCACAACCAACCAAGCAGCAGAGTACAAGAAATTCCAGTGATTATAGTCTGAACAtgaatgaagaagtttttcttcatcaaataaaagcTGAACTCGAACGTAGAGGAAAAAGGAAAGCAAAGAGAATCACAACCACTGGAGATCATGCTAGTGACGAACATTATCTTCTCGAGAATCGACGATACTTTTGCAAACTCTGTTCGTACGTCACTGTTCATAAAAAGAGATTCCGAACACACTGGGAAGTTAATCATGACAACTCTAATCCTGATTCATGTTCCAGTAAGCGAGTGATGAAGAAATCAGAAGATCATCCGGGCGATGGTGACTTCAAATTAGATCAGAATCGATATCATTGTCGACTCTGCTCGTACGTCTGTGATAGCAAACAAAGACATCGTGTCCACTGGGAGACTGAACATGATCTTATCAATGCTCATCTTTGTGCTTATCCCTCTTGCTCTAATCGCTTCCAAACAGCAGCAGAAGTGGAAAAGCATCATTTGCAAAGGCATTTGGGTGTGATGAGCACTCCAGTCGAACGTAAAATTAGACCGAAAGCATTTGAAAATGCTAAAACTGATATCGGCAGTTCTTTGAAATGTGAAGAATGctcgaaagaatttccaaCTGCGACGAAACTTCGATTGCACCTCGTTATACATCGAGACAAAAGCTTCCTCTGCGATATTTGTGGATTCAAAGCCTACACTCGAGCTTATATTAAAATCCACATGGGTCGAAAGCATTtgacaaatttcatttgcggTCAGTGTGATGAATCGTTCTCcatgaaatcaaaacttaaCGAGCACGAGAAAGCTATCCACAGCGGATCAACGATAGCTTATCACTCGACAGAAGataatcaatttgtttgcgATCAACCTGATTGCGGTCGAGCTTTCGCAGACAAAAATAAGCTCAAGCAACATCACGAAAACGTTCACAGCAAAGTTATTTGCGATCAATGCTCAATGTTAGTTTCTGAGCGTCACTTAGAGCGCCACATGCAATCACGCCATGGTTATGAGAAGCCTTTCAAGTGTGAGATTTCTGATTGCAAAGCATCTTTCATCTATAGACGTAGTTTGAGCTTGCACATGAATCTTCATGCTGGCATTCGACCTTTTCAATGCGAATATTGCTCAAAAGCTTACGTCTCCAAAAATAGCTTAGCAATTCATCTCATTCAACATGTGAATCCAAACAAACATCGCTGCGAAATCTGCCAAACGAACTTCACGACAGGCCAAGGACTTCGATCTCACTTGAGACTTCACTCAACTGATTCCCAAATTCGTCCTTATTCATGTAATCATCCTGGTTGCAACAAatctttcaagtttaaagaaCATGTCAGAGCGCACTACTATCACTGCCATACAGAAGTTGGACGAGAGAAGATAAAGCTTCTAGCTAGTCGGCCTAACAAGAAAAAGTAtccgaaaaagaagaagggaaatggtcaaagaaaagttcacaaAGATTACAAGAAAGTGCTTGACGAGTCGATGAATAAAGTTCGGTACTTATGCGAGTTCGAAGGTTGCGGAAGAAATTTTAGTGACAAGAGGGTGCTTGAGAGTCACATCAATAGCGTTCACTTCGGAATCAAAGGTTCTTTTATCTGCGAAGTTTGTTCTCAATCTTTTGCGACacaaaagtctttgaaaGTTCATCAACCGATTCATTTGGATTATGATAGCTTTAGCTGCAAGTTCTGCGGGAAAGGCTACAAGTCAAAGTCATCGCTCATCTATCACGAAGGGACTCATACGGGAAATGCCAACAGAAAACcaagaaaactaaaataa
- Protein Sequence
- MSHLIVGDNCEAKFIKKEPFETCFVVEPRFAVANFTKNVTRHEISTCHLCKRAEKLLRALYKHIQANHPDDGSETMKICSEHCAVGKMIQAEIVDHLMSLYISCETSSTTLETCEECTKPSLTEINELATSLCPGGMKHQSFLFNHFKTDHITDLTLYNEQSIAMTSCFCTDGLIIQTDLINHLLAHLVGINDTDWIKQEENCVDSYEETEQMPLEIIERSFSEVCNKQVSCDWQLRDEDEELSQPTKQQSTRNSSDYSLNMNEEVFLHQIKAELERRGKRKAKRITTTGDHASDEHYLLENRRYFCKLCSYVTVHKKRFRTHWEVNHDNSNPDSCSSKRVMKKSEDHPGDGDFKLDQNRYHCRLCSYVCDSKQRHRVHWETEHDLINAHLCAYPSCSNRFQTAAEVEKHHLQRHLGVMSTPVERKIRPKAFENAKTDIGSSLKCEECSKEFPTATKLRLHLVIHRDKSFLCDICGFKAYTRAYIKIHMGRKHLTNFICGQCDESFSMKSKLNEHEKAIHSGSTIAYHSTEDNQFVCDQPDCGRAFADKNKLKQHHENVHSKVICDQCSMLVSERHLERHMQSRHGYEKPFKCEISDCKASFIYRRSLSLHMNLHAGIRPFQCEYCSKAYVSKNSLAIHLIQHVNPNKHRCEICQTNFTTGQGLRSHLRLHSTDSQIRPYSCNHPGCNKSFKFKEHVRAHYYHCHTEVGREKIKLLASRPNKKKYPKKKKGNGQRKVHKDYKKVLDESMNKVRYLCEFEGCGRNFSDKRVLESHINSVHFGIKGSFICEVCSQSFATQKSLKVHQPIHLDYDSFSCKFCGKGYKSKSSLIYHEGTHTGNANRKPRKLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -