Sate007203.2
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- ZFY
- Assembly
- GCA_033063855.1
- Location
- CP093830.1:12369367-12372919[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.49 20 5.8 0.1 2 23 190 212 189 212 0.95 2 16 0.32 13 6.4 0.3 2 23 220 242 219 242 0.93 3 16 0.0061 0.25 11.8 1.9 1 23 250 273 250 273 0.95 4 16 0.0061 0.25 11.8 1.1 1 23 282 304 282 304 0.98 5 16 2.7 1.1e+02 3.5 0.3 1 23 393 417 393 417 0.82 6 16 0.019 0.8 10.2 0.7 1 23 453 476 453 476 0.88 7 16 0.047 1.9 9.0 0.3 2 23 627 649 626 649 0.94 8 16 0.27 11 6.6 1.9 2 23 689 710 688 710 0.95 9 16 0.21 8.9 7.0 0.2 2 23 718 739 717 739 0.94 10 16 0.11 4.5 7.9 0.4 1 23 801 824 801 824 0.97 11 16 0.74 31 5.3 0.2 1 23 866 889 866 889 0.95 12 16 4.6e-05 0.0019 18.5 5.3 1 23 941 963 941 963 0.97 13 16 0.00083 0.034 14.6 2.3 2 23 973 994 972 994 0.94 14 16 0.00021 0.0088 16.4 1.1 2 23 1001 1023 1000 1023 0.95 15 16 0.00033 0.014 15.8 2.0 1 23 1029 1051 1029 1051 0.97 16 16 0.013 0.54 10.8 0.6 1 23 1057 1082 1057 1082 0.90
Sequence Information
- Coding Sequence
- ATGAATCTTTGTCGTCTCTGTGGTGAAGAGAAGAGTCCACTTGACTTTAATATAGAACTCAGTGATAAAACAAGCTCAAATTGGATATATTTAGACCTAATCGAATTTCATACTCgcgtttcattaaaaacaaacaaactcttGCCACAAAGTATTTGCGAAGAGTGTCGAACTCAAATTGAGAACTTTGCTGCATTTTCAAGCAAAGTACGGACCGTTCAAGATAATTTTGATGAGGAAAATCAAGAGTTTGACTCGAAAGAATGTTTCTCACAGCTTCAGCCGATTGTCGAACTTTTTCCCGAAACAATTATCAAGACACAAAAGTCAGATGGGACAAGTGACGATGACAGCGAAGAATCTAATTGCTTAGAGACAAAGaaagaaCATTCCGACGAGAGCTTCAGCTACGACGACATCTTCAGCAATGAATTAAACTTAACGACCAATAACTTAAAGTATCAACTACATCTCGATGTGTCTGAATCATTTAAGTTCGAAGAAAGACAACTTCCACAATCTGCTCTAACTCAATTCAATTCGACTCGATGGAGAGATTTACTTAAAAGATGTGAAGTCTGCGACATTCCAATCAACAACCTAATCGACTTCAACTCTCATCAAGAATCTATTCACAACACAAAAACTGTTCAAGTTCCTTGTTTGCTATGTCCAAACACGTTCAAAAAAGTATTCAGCTTCATCAATCATATTCTCAACAAACATTTGGACCTCGAGCATTTGAGGTATTGCTGTTTAATTTGTaacgaaatgttttacaATCTCGTCTCACTCTATCGACACACGAGCAGTGTTCACTTAAATGAAGGCAGTCGACGGATATTCCAATGCCTTGTCTGCGGTCTTTACTCAGAAAACTTGACGTCTCTTCGAAAGCATAAGAGATCTCACAACTTCGACGAAGAATCTGAAGAACTTAAACGAATCTTTTCAAGTATGGAGAACTGCAATCACACAATTTCATTGGCAATTGACGACAGTTTAAAACTCAGTGATGGTACGATTAGCGAAGATCGTTTTAAACGCTGGTCAGACTTTAACATAAAGTGTTTTGTGtgtttaaaagaaaatttaactCCAATCGAGTATCATTCGCATCATCAGAACGAACATGTTGATGCGACGGAACAAGGAAAATATCAATCAGCTTTCAAGTTCACATGCAACGACTGTCCTGAAGATTCGTTTGCTTCTCTCATCGCATACTGCGCACACCAAATCGTAAAACACAATCACGAAGAGTTAAAATTCCGTTGCATCGTTTgctcaaaaatgttttggaaTTTCGTTGCTTATTCGTATCATCTCAAGTTCTTCCATCCATCGTTTCGTCAATTTCTTTGCATGATATGTGGAAAAATGTTGGAtcgcttttctctcttccgGCATCACTTGGTCGTTGCTCATAGTTCAACTGACGGAATAACGTCACcagcgaaaaaaagaagaagagaattgaaaaacaaacaaacagcTAAACGCGAAAAACCGATAATTAATAATGAAAGTGAATCAGATTcggaaagtgaaattgaagatgatgaagaagtcAGTTCCGAAGAACATGAAATCATTCGAAAAGTAAAAATcagaagcaaaagaaagtctaatgaaaggaaaattgacACTCCAAAGCGAAGACCAAACAATCGACATCGACAAGAGAGACAAACACTTTACGGAGCGGAGCTTGATTCAcccgaaaaactttttgctgaagaaatcaaaggaaCATCAGTCTTCTCTTGTTCGTTACGTCTCAAcgtatttttaaacaaagaTCTTCCTCACGGTGAAGTTTCCGATGAATTAGCCAGCGCTCAAGGCATTCATTCAATTCGTTGGAAGGATCTGTTAGTTTGCGCTGTGTGCAAAGTGCGATTCACCAACATCAACTGTTTGACTGATCACATTGCAATCAATCACGGCACAAGAACGCGGGCGTTTGGCTGTTACAATTGTGAAATTGATTACGGAGCATTGTACGAAAGCTCTCTGGTGAATCATCTCGTTGAACGTCATTACCATGAACATCTGAAGCTTTGCTGTCTAGTTtgctcaaaacttttctatgaTTTCTTGTCGCTGGTTCGTCATTACAAAGTTCACAATGGACGCTACACGGTTCTAGTCTGTTTCATTTGTGGATTCTACGCAAAGACGCTGGACGATCTTAAGGAACATAAAGCTTACCACATTCAAATGGAGAACACAAAGCCTGAGAACCAAACACTTTGcgaaaaagttcttgagaaattcaataaagGCGAAGAACCAAATGTTATCAACATGGACATTGCTGAGTTTGAAAGGAATCTCGACGGAACGGTCACAATGGAATGTCAAAAAAGATTCACAGTTGACTGGAGCTTTGCACAGTATCAGTGTCCGCTGTGCTTCCTTAACAATTCCAATCCTTTTGAACTATTTGCGCATCTAAGATTGAAGCATCCAAAGGAACAAGAGCAAActaggaaaatttattcatgcaACACTTGCGTCGAGAAGAAAGAGTTTAGCGGCATGCACTACTTTATCAATCACGCAGCAGAGTCACATTTCGAATCTCTCAGATTTACTTGTGTCGTCTGttcaaaactcttttggAATTACGTTGCCCTCGCTAATCATTACAAAAACATTCATCCGTCGTTCACAGCAGTTTTCTGCTGTCACTGCGGAAAACTATTTCACAGTATTACAAGTGGTGCCATTCATTATAAGAAAATTCTGATCATGCTGAcagacgaagagaaaaagcttaagagagaaggaaagcTAGAGCCAGAAGAGTCGAGTCATATTTGCCATGTCTGCGGAAAGAGCTGCAAGAACAATTATACTTTAGTCAAACATATAGCAACACATGAAGAGCCTGACCCATCGAAAATGCTTCAATGTCATGTGTGCAGTAAACTATTCaacacgaaaaataaattgcaacaACACATGGTGGGACACAACAACCTtcgaaaatggaaatgcaaAACTTGCGGAATgtcattcaacttcaagaaacttttacaaaTGCATACCAGAGCTGTCCACGAAAACGAAAGATCCTTTGCATGTACCTTCTGTGAGAAgcgatttttcaaaaaatatgaTTTGACAGTTCACGTTCGTCTTCACACTGGCGATTTCCCGTATCAATGTCCAGTTCCCGATTGCGATGCGAAATATCCAGCTTGGAGCAATCTCTTTAAACATTGTCAGTCTCGACACAAACTTGATATTCGTTCTGATGGTTACAAAAAGCTGAGAGCATCCGAGAAAGTGCCACAGAATGATGACTATGGATCTGATTag
- Protein Sequence
- MNLCRLCGEEKSPLDFNIELSDKTSSNWIYLDLIEFHTRVSLKTNKLLPQSICEECRTQIENFAAFSSKVRTVQDNFDEENQEFDSKECFSQLQPIVELFPETIIKTQKSDGTSDDDSEESNCLETKKEHSDESFSYDDIFSNELNLTTNNLKYQLHLDVSESFKFEERQLPQSALTQFNSTRWRDLLKRCEVCDIPINNLIDFNSHQESIHNTKTVQVPCLLCPNTFKKVFSFINHILNKHLDLEHLRYCCLICNEMFYNLVSLYRHTSSVHLNEGSRRIFQCLVCGLYSENLTSLRKHKRSHNFDEESEELKRIFSSMENCNHTISLAIDDSLKLSDGTISEDRFKRWSDFNIKCFVCLKENLTPIEYHSHHQNEHVDATEQGKYQSAFKFTCNDCPEDSFASLIAYCAHQIVKHNHEELKFRCIVCSKMFWNFVAYSYHLKFFHPSFRQFLCMICGKMLDRFSLFRHHLVVAHSSTDGITSPAKKRRRELKNKQTAKREKPIINNESESDSESEIEDDEEVSSEEHEIIRKVKIRSKRKSNERKIDTPKRRPNNRHRQERQTLYGAELDSPEKLFAEEIKGTSVFSCSLRLNVFLNKDLPHGEVSDELASAQGIHSIRWKDLLVCAVCKVRFTNINCLTDHIAINHGTRTRAFGCYNCEIDYGALYESSLVNHLVERHYHEHLKLCCLVCSKLFYDFLSLVRHYKVHNGRYTVLVCFICGFYAKTLDDLKEHKAYHIQMENTKPENQTLCEKVLEKFNKGEEPNVINMDIAEFERNLDGTVTMECQKRFTVDWSFAQYQCPLCFLNNSNPFELFAHLRLKHPKEQEQTRKIYSCNTCVEKKEFSGMHYFINHAAESHFESLRFTCVVCSKLFWNYVALANHYKNIHPSFTAVFCCHCGKLFHSITSGAIHYKKILIMLTDEEKKLKREGKLEPEESSHICHVCGKSCKNNYTLVKHIATHEEPDPSKMLQCHVCSKLFNTKNKLQQHMVGHNNLRKWKCKTCGMSFNFKKLLQMHTRAVHENERSFACTFCEKRFFKKYDLTVHVRLHTGDFPYQCPVPDCDAKYPAWSNLFKHCQSRHKLDIRSDGYKKLRASEKVPQNDDYGSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -