Sate008304.1
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- -
- Assembly
- GCA_033063855.1
- Location
- CP093830.1:18443625-18445188[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 2.9e-06 0.00012 22.3 0.6 3 23 189 210 187 210 0.95 2 9 0.0065 0.27 11.7 2.5 1 23 242 264 242 264 0.98 3 9 0.0018 0.075 13.5 0.1 1 23 272 294 272 294 0.95 4 9 0.0032 0.13 12.7 0.4 1 23 301 324 301 324 0.97 5 9 0.00067 0.028 14.8 0.8 3 23 336 356 335 356 0.98 6 9 0.092 3.8 8.1 5.4 2 23 366 387 365 387 0.95 7 9 0.00093 0.039 14.4 1.5 1 23 392 415 392 415 0.97 8 9 5.4e-05 0.0022 18.3 0.4 1 23 421 444 421 444 0.91 9 9 0.00079 0.033 14.6 2.0 2 23 453 475 453 475 0.95
Sequence Information
- Coding Sequence
- ATggacgaagaaaattgccGACTATGTAACTCTCGGTCAGACAGGCGATCGATGTCGAATATTTTCGAGGAGCCTTCGACTTATGctgagaaaatatcaaattatttatgtttcaaagtTTTTCAAGACGACAGAACTCCCAATTTCATCTGCTTCCATTGCTCTCAAACTTTAGACAATTTCCACAACTACGCGAGCAAAATCAAGAATATCCAACAGATCATTTTTCCACAGCAGCAGTTTCAATTGCAAGAGATCGCCTATGAAACGACAAGTACTTACGAGATTTGTTTGATACCAAGTGGAACCGAAGAAGCTGATAAAATAGAACTTCCTGAAACGATTCATCTTCTTCAGAcagagaaacaaaatgaaacaaaatcgatTCTGATATTGCAGGAAGAGGAGGAAGAGTCTGTTTCTAGTGAGAGCTCCCTGAAGAACGATGAAGATAACTCAAACAACGAAGCAATTCAAATTCCATCGAAACTTCTTGATAACGGTTTGCTAATGTACAAAGGCAAAGAGTTAATGGCTATGATGGCTCAGTTTTACAACACAAACTGCGAAATTTGCGGGAAGTCCTTCAAAAGAATTGCagaattattcaaacatcaaaagttAGAGCACAAAATCGAACCTTACATCTCTTGTTGCTCTACGAAATTTTTTAGAATTGCTGGGATCATCTGGCATTTCGTCCGTCATATCGAACCTGAACAGTTCAAATGCAACATCTGCGAATACAGCGTATCAAGACCAAAATTCCTTGAATGCCATCTTCAAACACATTCGGATCCCTCTCAgaagcaattttcttgtgaTCTGTGtgataaaagatttatttggaAAGGAGCTTTGAGAGCTCATCTCGTGAACCATCAATCAGAAAGACGAAATTATCACTGCCCAATTTGTCCACGTAAATACCTCTCAGCGGGATCACTCTCGTGGCATAAGAGATCAGCTCACGAAAGTGAAGCAAAGGATAAAACGAAGAATCTTTGTGAGATTTGTAGTAAAACCTTTGCCACTTTAACTAGTTACAAAGAGCACAAACTAATGCACAgtgaagaaagtgaaaagcttCAGCTTTGCTGTCCACATTGCGGAAAGTGGCTTAAGAATCCACGATGTCTCAAGTCTCATCTCCAACTTCATACAGAGatcgatttcaattgcaCACTTTGCGACTACacaacgaagaaagaaaaccttttgaaGAATCACATAATCACCAAACACACTTCAGATCGACCATTCGCTTGCGATGAATGcgacaaaactttcaaagtcAAACGAGCACTAACTGTTCACAAGGCTCAGAGTCACACAGCAGGAACGAAATCTGGAAGAACTTGTGAGTTTTGTGACAAAACCTTTGGAAGCTCAACGAATTATTACACTCACAGAAAGAATCTTCATCCAGAAGAACTGAAAAAGATTATTGACGAGAAGAatgaacaaaagaaactcaaacGAATTCAGATCGGACTTGAGCCGCCAACGTAA
- Protein Sequence
- MDEENCRLCNSRSDRRSMSNIFEEPSTYAEKISNYLCFKVFQDDRTPNFICFHCSQTLDNFHNYASKIKNIQQIIFPQQQFQLQEIAYETTSTYEICLIPSGTEEADKIELPETIHLLQTEKQNETKSILILQEEEEESVSSESSLKNDEDNSNNEAIQIPSKLLDNGLLMYKGKELMAMMAQFYNTNCEICGKSFKRIAELFKHQKLEHKIEPYISCCSTKFFRIAGIIWHFVRHIEPEQFKCNICEYSVSRPKFLECHLQTHSDPSQKQFSCDLCDKRFIWKGALRAHLVNHQSERRNYHCPICPRKYLSAGSLSWHKRSAHESEAKDKTKNLCEICSKTFATLTSYKEHKLMHSEESEKLQLCCPHCGKWLKNPRCLKSHLQLHTEIDFNCTLCDYTTKKENLLKNHIITKHTSDRPFACDECDKTFKVKRALTVHKAQSHTAGTKSGRTCEFCDKTFGSSTNYYTHRKNLHPEELKKIIDEKNEQKKLKRIQIGLEPPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -