Sate001757.1
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- -
- Assembly
- GCA_033063855.1
- Location
- CP093829.1:8748428-8752510[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.89 37 5.0 0.1 6 23 76 93 74 93 0.97 2 15 0.5 21 5.8 3.8 2 23 154 176 153 176 0.94 3 15 1.3 53 4.5 0.4 1 23 182 205 182 205 0.86 4 15 0.0018 0.073 13.5 0.2 2 23 211 233 210 233 0.95 5 15 0.00012 0.0048 17.2 1.4 2 23 254 275 253 275 0.96 6 15 0.0077 0.32 11.5 0.7 1 23 281 306 281 306 0.95 7 15 1 43 4.8 0.1 1 23 339 364 339 364 0.90 8 15 0.0006 0.025 15.0 2.4 2 23 371 392 370 392 0.95 9 15 2.7e-05 0.0011 19.2 1.0 2 23 399 421 398 421 0.96 10 15 0.00031 0.013 15.9 2.6 2 23 544 565 543 565 0.96 11 15 1.8 75 4.0 1.5 1 23 569 594 569 594 0.87 12 15 3.7 1.5e+02 3.1 0.3 3 23 599 618 598 618 0.91 13 15 0.016 0.68 10.5 1.5 3 23 631 654 630 654 0.92 14 15 1.4e-05 0.00056 20.2 1.3 1 23 660 682 660 682 0.98 15 15 0.00083 0.034 14.6 3.9 1 23 688 711 688 711 0.96
Sequence Information
- Coding Sequence
- atgatgaaagacttgaaaattaaattagagaGGATTGATCAGGTATTGCGCATTGAAAAACCATTGGAAAGCTATCCAATCGAGCAAGTTGTGATAAGTCAAAAAGAACAGCATCGTGACTGTTGTTTGTGTGATGATGCCGAGCGTTtacaaatttctcttttaaatcatttcacttcaaatcaTCCGAattttaaagacgaaaaaatcaataatgtCTGCAGTTGTCCAGAATCTTTTGAATTGCAAGCGAAGCTTGTTGATCATTTGCTTCGACATGTTTTTaagaagtttgaagtaaAGGTTGAACCAGAAAtagaaatctttgaaaaggaagaagtGGAAAATACATTTGAACAAGATACAGACTCTAACGAACAAGATTATGCTTCAGACAGGAACGACTCGCTGTTTGGAGACGAAGACACAAATCATGAGAATTTGAAAGAGCGAAATATTCGATGTGATCTCTGTAGTGCAACTTATCATGAAAAGAGATGCCTTACAAGACATTTGAAAGCGCAACATGATCCAgacaacaaatttaaatgcgAGAAATGTCCTCAGTTTTCATTCGCCAGCATTCAAGGCTTACGAACTCACAATGCATTACACAAAGCGAGGAATCTCGTGTGTGACTATTGTGGCAGTCGCTTTATTGATAAACCAGGACTCAAAGAACATttcaaaaaagttcatttcacCAACAAATCAATAGCCACGAAGAAACCACTGAAGGTCAAACCACCGATCAACTTAAAATGTAGCGAATGCGATAAGACATTGAAAAACCCTCGACAACTTCGACTGCACAAATTGCGACACGACACGAGTCAAACTTTCACTTGTGATTATCCAAACTGCTCAGCCAAGTTCACagttcaaagaaatcttaaaaGCCATGAAACGACAGttcacaagaagaaaatgtgcGACCAGTGCTCGATGCTTGTTCCACCTTCGAAGATGAAGAGACATTTCCTAATTCATCACTCAAAAGACGAATCTCATTTGTTCGAGTGCGAATATCCTGAATGTACAGCAAGACTAAGCTCAAGACAAGCTTTGATCAACCACAACAACGCTGTTCACTTAAAACTCAAACCATTGATGTGTGAATTTTgctcaaagaaattctcgaGCACGAGATCGCTGAGGAAACATCTTGTGAGACACACAAATCCTGAAAAGCTCTACTGCAGCAAATGtgaaatcaacttttctGAACCTTCCACTCTCAAGCGACATATTCGACGAAAGCATTCGAAAGCAGCAGAAGATCGAAGTTCTCCAATTCTCAATTTTAAATGCGTTGCTCAAGATATGAGTGATGAGCAACTTATCTATTTCTGCGAATGTCCTGAATCTAAGGagcttcaaacaaaattactgACGCACCTAATGAAACATATCATGAAGAAGCGGAGACGTCTACCCAAAACATTGCCTTCAACTACTTATCAAAGCTCGACTTTCGTTAAAGACGATGAAATGGACAATCGATCCGACGATGATGTTAGAAGTTACGGCGATGCGAACAACTCCGATGATAACTTCGAACCAGTtaggaaagaagaaacgacaactaaaattaaaagattccGGACGCCAGTGATAGATCAAAACCTTCAGTGCGATCGTTGtccaaaaactttcaagtctCGTAAATGCCTTATAACGCATGTCATAAGCCACACTAATTACTTTCCTTGCGTGTTTCCTGGATGCCAAAAGATCTGCAAGTCAAAAGTCGTCCTAGCACAACATAAGCACAATATTCACGACAGGAAAATGTGTGAAAGATGTTCATTGGTGATTCGAGCTTCAAAAATGACAGAACACATCAGATTACACGATCTCGGTGGCGACATGAATGCGAAAACTGTTAATTGTAAAGTTGAAGGAtgcaaaaaagcttttcgatcTTATCACGCTTTGCGTTATCATAACAGCACAGCTCACAGTACTGACAGACCGTTCATGTGTGAGTTCTGTTCGATGTCATTTCCAACTAAAGCTAATCTGAGAGCACATCGGAAAAAGCACACGGATCCTGATCGttaCCGTTGTAAAATATGTCAGCAACCATTTAACGACAACAAATCTTACGTTCGTCATCATCTTCGAAAACATCCAGAAATTGAGCTTCCTAATCAAGCTCCACGGCCGTATAAATGCGATTATCCAGATtatttGCTCGAAGATGTTTATACGAAAATATCATCTTGA
- Protein Sequence
- MMKDLKIKLERIDQVLRIEKPLESYPIEQVVISQKEQHRDCCLCDDAERLQISLLNHFTSNHPNFKDEKINNVCSCPESFELQAKLVDHLLRHVFKKFEVKVEPEIEIFEKEEVENTFEQDTDSNEQDYASDRNDSLFGDEDTNHENLKERNIRCDLCSATYHEKRCLTRHLKAQHDPDNKFKCEKCPQFSFASIQGLRTHNALHKARNLVCDYCGSRFIDKPGLKEHFKKVHFTNKSIATKKPLKVKPPINLKCSECDKTLKNPRQLRLHKLRHDTSQTFTCDYPNCSAKFTVQRNLKSHETTVHKKKMCDQCSMLVPPSKMKRHFLIHHSKDESHLFECEYPECTARLSSRQALINHNNAVHLKLKPLMCEFCSKKFSSTRSLRKHLVRHTNPEKLYCSKCEINFSEPSTLKRHIRRKHSKAAEDRSSPILNFKCVAQDMSDEQLIYFCECPESKELQTKLLTHLMKHIMKKRRRLPKTLPSTTYQSSTFVKDDEMDNRSDDDVRSYGDANNSDDNFEPVRKEETTTKIKRFRTPVIDQNLQCDRCPKTFKSRKCLITHVISHTNYFPCVFPGCQKICKSKVVLAQHKHNIHDRKMCERCSLVIRASKMTEHIRLHDLGGDMNAKTVNCKVEGCKKAFRSYHALRYHNSTAHSTDRPFMCEFCSMSFPTKANLRAHRKKHTDPDRYRCKICQQPFNDNKSYVRHHLRKHPEIELPNQAPRPYKCDYPDYLLEDVYTKISS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -