Sate004081.1
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- -
- Assembly
- GCA_033063855.1
- Location
- CP093829.1:20870853-20872536[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.04 1.6 9.3 0.7 3 23 170 191 168 191 0.94 2 10 0.045 1.9 9.1 0.6 6 23 200 217 200 217 0.98 3 10 0.0065 0.27 11.7 3.7 1 23 222 244 222 244 0.96 4 10 0.00044 0.018 15.4 5.3 1 23 250 273 250 273 0.97 5 10 0.0018 0.074 13.5 0.7 1 23 282 307 282 307 0.91 6 10 0.00014 0.0058 17.0 0.5 3 23 314 334 313 334 0.97 7 10 0.0016 0.065 13.7 1.4 2 23 343 364 342 364 0.97 8 10 1.7e-05 0.00072 19.8 0.6 2 23 372 394 372 394 0.96 9 10 6.2e-06 0.00026 21.2 0.6 2 22 401 421 400 423 0.88 10 10 1.3e-05 0.00055 20.2 2.9 1 23 429 452 429 452 0.97
Sequence Information
- Coding Sequence
- ATGTCTTGTCTTTTATGCTTTTCTGCAGTTGCGGAGGATGAAAGATTAGGCATTAATGAGTTTATTGAGCAAAGTGTGTTAACAGCTTTAGAATTGATTCAAACTCATCTCAACTTTGCTGAGaaaattcttcCTGACAACGACTCCTGCGATCCTGAATCGTGGATTTGTCATAATTGCTGGACACACCTTGAAACATTCCACGATTTCCACGAAACAGTTTCTGCAAATTATAATTCGAAAGtcattgaatcaaattatgGCACATCCAAAATTTTTGTTAGCGACGATCTCGCTAAAGATGTTGAAGACGTTGCGATGAAATCTGAAGtagaagatgatgatgagaacaACGATGCTGAGTttttagaagaaattattctaGAAACTGAAGATCCAAAAGACGACAAACCttcatttcatcaacaacCGCGAACAACGAAGCAACATTCAATCATGAATGACAGCGCTGATGATCAAAGAATCAGAGAGACTGCCAATATGTGTTGCGATATGTGCGAATATGTTTTCGAAAGTCTGAGAGAGGCTAAAGCTCATTACAAAAACGCTCACGCAGTCGAAGGATACATTAGTTGctgcaaaaagaaatttaagcAACGATATCGTCTTGTTGAGCACGTCAATATTCACTACAACTTAAGCCACAGTTGTCCTGTTTGctcgaagaattttaattgtagATCTTATCTAACGCAACATATTGCACTGCAcgacgaaaataaacaataCGAATGCGCTCACTGctcaaagagattttctaaGAAACATCAAGTTCGTAATCATCTTTTGAAAGTTCATATCTTTGATAATgttgaaaaaactttttgctgcCCAATTGAGAATTgtggaaagaaatttgtcaGTCCCGGTCGACTCAAGCTTCATGTCGATTACACTCATCCAACAAAACTCGAAATCTGTGAAATTTgctcaaaaactttcaaaaccaaaaatgCTATCGACGAGCATATGAAGATGCATGCTAGAAAAGcTGAGGATCGAATTCGCTGTGAGATTTGTGGTCATTTTCTGGCAGATCGCAGAACATACAATCGACATATCAAAAACCATGAAACTGAAAAGCTCGACAACACATGTAGCTACTGTGGCAAGAAATCTCCTAACAGCAATGCTTTAAAGAAGCATATTAGATACGTTCACGAAATGAAGAATACCCTCCAATGCAAGTTCTGCGATAAATCTTTTAAGAGACCAAGAAATCTTACTGACCACGAAGCAGCAATGCACACCTTGGAGGATCTCTACGCTTGCACTTTTTGTACGAAAACCTTCAGGAATCAATCGAATATGCTTGCTCATAGAAAGAAGCAACACCCAGAGCAAtATCAGAAACCAAATTACATGCGCGATGCACTTTAA
- Protein Sequence
- MSCLLCFSAVAEDERLGINEFIEQSVLTALELIQTHLNFAEKILPDNDSCDPESWICHNCWTHLETFHDFHETVSANYNSKVIESNYGTSKIFVSDDLAKDVEDVAMKSEVEDDDENNDAEFLEEIILETEDPKDDKPSFHQQPRTTKQHSIMNDSADDQRIRETANMCCDMCEYVFESLREAKAHYKNAHAVEGYISCCKKKFKQRYRLVEHVNIHYNLSHSCPVCSKNFNCRSYLTQHIALHDENKQYECAHCSKRFSKKHQVRNHLLKVHIFDNVEKTFCCPIENCGKKFVSPGRLKLHVDYTHPTKLEICEICSKTFKTKNAIDEHMKMHARKAEDRIRCEICGHFLADRRTYNRHIKNHETEKLDNTCSYCGKKSPNSNALKKHIRYVHEMKNTLQCKFCDKSFKRPRNLTDHEAAMHTLEDLYACTFCTKTFRNQSNMLAHRKKQHPEQYQKPNYMRDAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -