Sate006111.1
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- ZFAT
- Assembly
- GCA_033063855.1
- Location
- CP093830.1:6186930-6189307[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00016 0.0068 16.8 1.0 1 23 157 180 157 180 0.96 2 17 0.14 5.9 7.5 1.3 3 23 189 210 187 210 0.93 3 17 0.26 11 6.7 0.2 3 23 220 241 218 241 0.92 4 17 0.0011 0.044 14.2 1.6 1 23 299 322 299 322 0.98 5 17 0.012 0.52 10.8 0.1 1 23 361 384 361 384 0.93 6 17 0.19 7.7 7.2 7.5 1 23 397 419 397 420 0.93 7 17 0.38 16 6.2 2.1 2 19 425 442 424 447 0.89 8 17 0.1 4.2 8.0 1.2 2 23 464 485 463 485 0.97 9 17 2.3 97 3.7 1.1 2 23 493 514 492 514 0.95 10 17 1 41 4.9 0.1 1 23 520 542 520 542 0.92 11 17 0.019 0.78 10.3 4.2 1 19 551 569 551 574 0.89 12 17 0.012 0.51 10.9 0.1 1 23 580 603 580 603 0.96 13 17 7.3e-05 0.003 17.9 1.5 1 23 611 633 611 633 0.98 14 17 4.5e-05 0.0019 18.5 0.2 1 23 639 661 639 661 0.97 15 17 0.02 0.84 10.2 3.1 2 23 670 691 669 691 0.97 16 17 3.1e-06 0.00013 22.2 0.4 1 23 697 720 697 720 0.97 17 17 0.00056 0.023 15.1 0.0 1 23 726 748 726 748 0.97
Sequence Information
- Coding Sequence
- ATGGCTGGAAGTTGCCGCTTGTGTAGGAAATTAAGCGATGTTTCCTTTAAATCTCTGTTTGACTACGAAGATGGACAACAAATCGCCGAGGTTGTTCAGAAAGTTATTCCGATTAACATTGTGAAAGACGATGATTTACCAAAACATATTTGCTTAGCATGTTTAGAGGTCTTACTCAGCGCTTCAGAGCTTCAAAGAATCAGCATTGAGAGTGACAAATTCTTCAGAAGTCAATTTCATGTAAAGCGAGAACCGTCGGCAGATCCTATCGAGCACATAAAAATCGAGTATGATATTGATTTCTTGAACTGTGGTGAAGCCAGTGAAGCATCTGAAAGCGACGATTCatctaaaattaatgaatcaaGTTCACGACAGaaatttgaagatgaagGCAGCAAAGGAAAAACAGATTTTAATCCACGTATCGCTCCTGGGTCTGTTCTTTCGCCATTCAGTGAAATTTGCTATTTGTGCAGTTTTTGTGATATCAGTTTAAAACGTAAGAACAATGTAGTTCGCCATATGAGAACTCTTCATGATCCCATCTCAAAACCTTTTGGTTGCTTGTACTGCAATCTTCGATTTAGCaagaaatcgatgaaaacCTCTCATGAATCAAGTGCTCACCGAAACGAGAAAccatcaacaattttctgtgAAATTTGTGGCGCAAGTGGCAGCAGTAAAGAAGGAATGTCGCATCATACTTCATTAGACCATGACACTTGTGctaagaaaaaaagaaagttttctcatgGAAACATTGAGAAGCACATAGAATCTCGCGCTTCGGACAATCACAAAGTAGAGAAAACTGTTATCAAGCGGCTCAAGCGTTTCAATCCACGACCATCTCCAGGATCTGAATATCTAGACTACAACGACGCTTACTACACTTGCAACTTCTGCGATAAAGAACTTAAGCCACGTAAAAATATATTACGACACATCAAAACGAAACACGACCCAGAAGATCGACCGTTTGGCTGTTGTTATTgcattgaaagatttttaacGAACTGCGATCTTGAAGTTCACGAGGCTGAAACTCATAAAGATTGTgacaacaaaacaattttcttttgtgataTTTGTGGAGTCAGCGGCGACAGGAAAGATGGAATGGAGCATCACATGATAGATGATCATTTGAAACTATCAGCGAATGTCGACGAAAGCTTCAAGTTTTGCTGTTCAAGATGCAGATTGAGATTCAAACATAAACGTTCCCTTGAACAACACGTCGCTGCACATCACgacgaagaaatcaaatgcGATCAATgcagagaaaagtttttcgataAAGTAAAACTCCAATATCATTGTCTAATCGTTCACGAAGCAGTTATTCGCGAACTCTTTCAACACGAAGTTGTTCAAGAGTTGAAGTGCTGCAtttgcaatgaaaactttttaacaGAATTTGATCTATCGATTCATCTCGAAACTCATCGTGACAGTTTCGATACCACTTCATGTCAACTCTGCCAAATGCAATTGAAGAACTTCGATTCATTCGTCGCTCATTCAAAGTATCACGTAAAACCAAAGACTCATCAAtgcttgaaatgtttaaaaatatttccattagATGGAAAACTTATCGTTCACGTTGCTGGTCACAAGCGAAGTGAACAACCTCGACCTCATCATTGCAGTAAATGCGACCGCAAGTTCAAAACAGCATGGAAGCTTAACATTCACGATAAGGTTAAGCATCAGAACCAAACTCTCTTCATTTGTCCTTTTTGTGCAAAATCTTTAGCAACCGCGAGTGTCCTCGACACCCACATTCGTTATGTTCAcaatcgagagaaagaattaaagtttgaatgcAAAATCTGCAGCAAAAAGTTCACAAAGAAAGTCGCTCTTGATCGACATGAGACAACTCACAGTACTGACCGACCGCACGTTTGTGAACAATGTGGAGCAgctttcaaaaccaaagatGGACTTGGCGTGCATATCAAACGGCACGATGGGACGTATAAGAAGGATATTCCATGTCCTCAATGCAGTTTTAAATTCCACGACAACCATCGACTGCAGCTTCATCTACTTACACATGCGGGGGTGAAACCTTATGAGTGTCAATATTGCGACCGCGCCTATACCTCGAAAGGAGATCTCGTTAAACATTTGCAGAAAGTTCATGTAGGGGATGCCGTTTATAAATGTGAGAAGTGCCCGCTAGCTTTCCCGAGAGTAGTTGAGCTGAGAGAACATCTCGTTGTGCATAgcaataattaa
- Protein Sequence
- MAGSCRLCRKLSDVSFKSLFDYEDGQQIAEVVQKVIPINIVKDDDLPKHICLACLEVLLSASELQRISIESDKFFRSQFHVKREPSADPIEHIKIEYDIDFLNCGEASEASESDDSSKINESSSRQKFEDEGSKGKTDFNPRIAPGSVLSPFSEICYLCSFCDISLKRKNNVVRHMRTLHDPISKPFGCLYCNLRFSKKSMKTSHESSAHRNEKPSTIFCEICGASGSSKEGMSHHTSLDHDTCAKKKRKFSHGNIEKHIESRASDNHKVEKTVIKRLKRFNPRPSPGSEYLDYNDAYYTCNFCDKELKPRKNILRHIKTKHDPEDRPFGCCYCIERFLTNCDLEVHEAETHKDCDNKTIFFCDICGVSGDRKDGMEHHMIDDHLKLSANVDESFKFCCSRCRLRFKHKRSLEQHVAAHHDEEIKCDQCREKFFDKVKLQYHCLIVHEAVIRELFQHEVVQELKCCICNENFLTEFDLSIHLETHRDSFDTTSCQLCQMQLKNFDSFVAHSKYHVKPKTHQCLKCLKIFPLDGKLIVHVAGHKRSEQPRPHHCSKCDRKFKTAWKLNIHDKVKHQNQTLFICPFCAKSLATASVLDTHIRYVHNREKELKFECKICSKKFTKKVALDRHETTHSTDRPHVCEQCGAAFKTKDGLGVHIKRHDGTYKKDIPCPQCSFKFHDNHRLQLHLLTHAGVKPYECQYCDRAYTSKGDLVKHLQKVHVGDAVYKCEKCPLAFPRVVELREHLVVHSNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -