Sate007404.1
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- -
- Assembly
- GCA_033063855.1
- Location
- CP093830.1:13588916-13591219[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.022 0.9 10.1 0.8 1 23 101 124 101 124 0.98 2 17 0.81 34 5.1 2.2 3 22 131 150 129 152 0.88 3 17 1.5e-05 0.00062 20.0 2.9 1 23 162 185 162 185 0.98 4 17 0.0035 0.15 12.6 0.5 2 23 207 229 206 229 0.89 5 17 0.0033 0.14 12.7 2.1 1 23 237 259 237 259 0.98 6 17 0.66 27 5.4 1.3 2 23 303 325 302 325 0.92 7 17 7.9e-05 0.0033 17.8 0.8 1 23 333 356 333 356 0.96 8 17 0.00013 0.0055 17.1 1.2 2 23 360 382 359 383 0.92 9 17 0.0039 0.16 12.5 0.3 1 23 392 415 392 415 0.90 10 17 0.098 4.1 8.0 0.5 1 23 420 444 420 444 0.90 11 17 0.0001 0.0042 17.4 3.2 1 23 454 477 454 477 0.98 12 17 0.71 30 5.3 0.5 3 13 485 495 483 501 0.88 13 17 0.068 2.8 8.5 4.3 1 23 516 539 516 539 0.96 14 17 0.49 21 5.8 2.3 1 21 583 603 583 606 0.90 15 17 0.014 0.57 10.7 1.0 1 23 617 639 617 639 0.96 16 17 0.47 20 5.9 0.1 2 20 665 683 664 687 0.86 17 17 0.00012 0.0051 17.2 3.8 1 21 697 717 697 718 0.96
Sequence Information
- Coding Sequence
- ATGGATTACATAGAAATATCCAGTGATTCCGATGAAAGTTATTACGAAGCTAAACAAGAGACAATCGAAACAGCACTATCACCAATAGtaataataaaacaagaaGGAGAAGACGATTGCAGCGCTGATTTAGATCAATTCGTAGAAATATCATCTGATGAAAGCGATTCTGGTATCGACttgaagagaattgaaaatttagaGCCGATAACAAAccaaaatgaagaaaatcgcAGTCTCTTGATTCCACGGATACATGTGAGCAAGATCCCGATAAACATTGGAATCTTCGAATCAGTCTTCAAATGCAAAAAGTGCGATGACCTTCTTAGATCGGCAGCTGATCTTAAGGACCACTACCGCAAGCTCCACACGTTTCGTAAATTTGGCTGCCCTTCATGTGACAAGAGATTTCACGTTCGCCTGAGTTTTAAAGCACACTTTGATTTAAAACATGCTTCGATTAGCGACCAAATGAAAAAGTATCGCTGCAACAAGTGTCCATTGTCTTTCTCGAGGAAACAAAGTCTGTTTCAACATTATAAGTCTGAGCATAATTCACAAAAGCGAGTCGTCGTGAAACAGGACATTGGCCGACCCGACCCGTCAGGAAACTTAGTTTGCAAAGTCTGTGACAAAGTTGTGAAGAGCAGGAACGCGCTCCGTTCTCAtttcgattattttcatcaagaaggagaagaacgTAGATACAAATGTTTGTCTTGCGAGAGGTCATTCAACATAAAAGATTGCCTTGCACGTCATTTGGTGACACATGGCagaatcaaaaaagaaatgacgTCTACTGTTCCCATCCAAACTaacaaaaagcgaaaacGTATACGATTTAGTCGTCCACAGCAATCAGGACGAATAGTTCGTCAATAtggaaacatcaaaaaactttcttgtgATTTCTGCGAAAGAATCTTCAGCAGTCGCATAGCCTGCCTTTGGCACATGGATAAGTTTCACGAGAACGGAAAGGTTAATAAATATAAATGTGACCAATGTCCGAGATCCTTCAGCATTCGCAAAAATTACAAAGCTCATGTGTCAAGCGCTCATAAGGCTACATCATGTGAACTGTGCCAGAAAACCTTCCGTTATCCTAATAATTTACAACTTCACATCGATTGGTATCATCATACAACATTCGTAGGAGAGAATAACTTCATTTGCGATCTGTGCCCGGAAGCATATCAATACCAAGCAAATTTAAACAGACACAAGTATGAAACCCACGGCGTCAAAGCCTTTAAGTGTCAACTTTGTGATAGAGAACCATTCGGTCGGTTGAGTCAATTGCGATCTCACGAAGACTACATGCATAAAAGCGATAAAgaacaaaaaggaaaatattcatgtGGACATTGTTCAATGAGCTATAGAACGAAAAAGAGTTTGGAAGTTCATCGCCGTAAGATTCATTCAATTCGAGTTGAAATCGCTTGTGAGTTTTGtgacaagaaattcaattcacaGCAAGGTCACAATTACCACAACGATTTTTATCATCAGCCAAATGTTGAGATCAAGAAGCGTTATCCATGTCAATTCTGCCCACGATCGTTTTGTCatttagaaatttttaaaaagcatACCAACATCGAGCACCTTGCAGTAAAGCctcaacaaaatcaaagaagGAAGCGAAGCACTGGACCAGTTACAAATAAATCTaaaggaaatcaaagaatGAAGCGAAGCATTGAAAGCAACCAATACGATGCTGATGTTGGATCATACCATTGCAGAAgatgtaaaaaaaacttaatctCCAAAGGATCTCTCATAATACACAAAGATTTCAGTCATGGATACGTCGAGGATGGTAGAGCAAGAAAGTTCCAGTGTGACAAGTGCCCAATGtcctttgaaattaaacaaaacattcttcGTCATTTTACATCTCACGTGCAAACTTTGACAGTGAAAGTCAAACaagtgaagctttcaaagaaaaatcgttaCGAGAAGAAAGATGATCTGGTTTGCAAATATTGTGGAATTGAATACTTCACTCTTACTGGCGTACGACAACATGAAGATTTCATACACGAGTCGCTTCGACAGGAGGAACGTCGTTATAAGTGTTCTCACTGCAGTAGCTCCTTCGAAtacaaaactaatttaagGCGACACATGCAAAAATGTTCGCTCAACTCAACATCAGAAAGCGCAGCGAAAGATGAGAATGTTTCAGCAAGACGATCAATTAGATTCATCATGAAGACAGAGACTGAATGGAAAGACGACTTTGAGCTTGAAGACTTCGAtatcaaaattgaaaaagatgATTGA
- Protein Sequence
- MDYIEISSDSDESYYEAKQETIETALSPIVIIKQEGEDDCSADLDQFVEISSDESDSGIDLKRIENLEPITNQNEENRSLLIPRIHVSKIPINIGIFESVFKCKKCDDLLRSAADLKDHYRKLHTFRKFGCPSCDKRFHVRLSFKAHFDLKHASISDQMKKYRCNKCPLSFSRKQSLFQHYKSEHNSQKRVVVKQDIGRPDPSGNLVCKVCDKVVKSRNALRSHFDYFHQEGEERRYKCLSCERSFNIKDCLARHLVTHGRIKKEMTSTVPIQTNKKRKRIRFSRPQQSGRIVRQYGNIKKLSCDFCERIFSSRIACLWHMDKFHENGKVNKYKCDQCPRSFSIRKNYKAHVSSAHKATSCELCQKTFRYPNNLQLHIDWYHHTTFVGENNFICDLCPEAYQYQANLNRHKYETHGVKAFKCQLCDREPFGRLSQLRSHEDYMHKSDKEQKGKYSCGHCSMSYRTKKSLEVHRRKIHSIRVEIACEFCDKKFNSQQGHNYHNDFYHQPNVEIKKRYPCQFCPRSFCHLEIFKKHTNIEHLAVKPQQNQRRKRSTGPVTNKSKGNQRMKRSIESNQYDADVGSYHCRRCKKNLISKGSLIIHKDFSHGYVEDGRARKFQCDKCPMSFEIKQNILRHFTSHVQTLTVKVKQVKLSKKNRYEKKDDLVCKYCGIEYFTLTGVRQHEDFIHESLRQEERRYKCSHCSSSFEYKTNLRRHMQKCSLNSTSESAAKDENVSARRSIRFIMKTETEWKDDFELEDFDIKIEKDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -