Sate007588.1
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- -
- Assembly
- GCA_033063855.1
- Location
- CP093830.1:14830085-14834620[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00069 0.029 14.8 1.3 1 23 928 951 928 951 0.95 2 13 0.016 0.66 10.5 1.2 1 23 1060 1082 1060 1082 0.97 3 13 0.0075 0.31 11.5 3.7 2 23 1085 1106 1085 1106 0.97 4 13 0.015 0.61 10.6 1.6 1 23 1112 1134 1112 1134 0.96 5 13 0.00019 0.0081 16.5 3.4 2 23 1141 1163 1140 1163 0.95 6 13 0.011 0.44 11.1 0.1 5 23 1176 1194 1174 1194 0.97 7 13 3.9e-05 0.0016 18.7 2.6 2 23 1200 1222 1199 1222 0.95 8 13 0.11 4.7 7.9 0.0 3 23 1236 1255 1234 1255 0.96 9 13 0.00026 0.011 16.1 3.3 1 20 1262 1281 1262 1284 0.92 10 13 0.00053 0.022 15.2 0.3 1 23 1292 1314 1292 1314 0.98 11 13 1.2e-05 0.00049 20.4 2.3 1 23 1320 1342 1320 1342 0.97 12 13 0.00021 0.0089 16.4 3.8 1 23 1348 1370 1348 1370 0.98 13 13 0.0034 0.14 12.6 4.6 1 23 1376 1398 1376 1399 0.96
Sequence Information
- Coding Sequence
- aTGGAGCAGCAACAATGTCCAATCTGCATGCTCTATCTTTTACCTGGGATGAACTTACAAGATCATCTCGATACACATCCCAAGGACATGATCATCAAAGCATTGCTGTCTGCTAAGAAAGAGCCACCTAAACCCACTGTGAGCAATGAAACAGCTGCCACGGTCTACCTTACGACGTCAGCTCCATTCAATACATCGCAATCCCACATTTACCAAGATCAACAACAACCTCAGcagcatcaacaacaatcgccgatacaaaataattttgctttgACAAAACGTCATGCAACCAACCAAAACAATACGGTAGTGCTCCACAATCGTCCTTATCGATTAACATTGGATGCTCCTCAAGCAGTTTCAAATCCAGCAAACACGACCTTCCTCAACCATCCTAGTTCCGTAACTAATGATGGCGGCGACATATtcgacaacaacaaaacagCTGCTTTTCGATGTATTCAACAAAATACCGAACAGAAGAACATTATGATAGTGAATACGAGCAGCACGCAATATATTCAACAAACCCTTCCTGTAAAGAAACCATCGACGGCAAATGCAATCGAACTTCATCCCGTCAACATCGACTCCGTTCCGaatgcaatttcaattattccaCGTTATACAAGCGAAAAATATTCGGGACCACCACCTCCATATTCCACCGCCATCTCATCCGTCACCAATACAATAAATGATAAGCCCCGAGTCATTGATCTCACACAAACTCCCACAATATCGACCATGAAAGTAATTGAGAAGCAGAGCGggagcaacaacaaaaggaCGACCTTGAGCGGAAACGGAACAGAGGAGAATCGTCATTTGATGATAAGAGCACCCCAGAAATACTTGGAGTACACGCAAACTGAGAACGGCTACATCATGATAACAGAAAAGCTGATCTCACAACCATCCACGTCGCAGACACTTAACGTTTCACATGAAGAGGAAGTGATCGAGGATGTTCCCGAACCAAACACAAATGATTACACCATAAAGTTCGTTGACATTGATAACCAAATGTCTTTTGATATGACGGGCGAAGATGGAGAcggaaagtttcaagaagaTCAGCAGTTTGTcattgaaaacgaagaaataatGCAacaagatgatgatgatgttgagATTCTTCCaaatgagaaagaagttCCTTTAAAGGCTGGACCATCAAAGAACAATCATGGAGTTAAAGTTCTCAGCAACGTGAAGCTGACATCGTCAACATCCGAATTGTTTTCACCGTCGATCAAAGATATTATTCAACAGTACAATAATCAGACTGAGAAAGGGAATAAGAGTGATGTTGTTGAAGAGATTTCTCCTTGTAGCAATGttgctgaagaagaaaataatgaattaTCGCTCATTCAATGTacggaaactttaaatctaagcaaagagaaagatgaaTCAATGAGCGCATGTACGAGTGTAATCCGCAAGACAACGATTGATGTTGACTCTTCTGCAACGTCTCCTCAAAATGCATCATCGCCAACAGAACCGCAGCCGAGCACTTCAGGATGTATGCGCAAGTCCAACGTTGTGTTCAATTCAACTCCAACAAATAGACTGAAACTTAACAAGCAACCAAAAAAACTTGTcgtaaaattaaagaagccGCTGTTAGCTTCTGGAGAACAACCATCAGTGAACGCTAAACAAGAACATCAAGAAGTTACAAGCGTTGTAGACgaaatatcaattaaaagcGAAGTGTTTGAGGAAACTGCGATCataagtgaaaagaaattgtctGACCCACAAGAGTCAAGTCCGTCATGTAAATTAGAAAACGAAGAACGCTACGACACAACATTTCTCGATCATCATGACTATGAACATGTTAACACTATAGAGGTAACTCCAGAGATCCACCACGATTCAGAAACGAATCAATCCTTGATGAGCATGGATCTTGAGCCAGAAAATAATGTTAAACGCGAGCAAATCGAAGACGACTTTCCAGTTGTTATAAAACAAGAGCTCAACACTTGTAGTACATCTTCATCATCCTCAACGTCTGTCTCAAGCAGCAATTCTTGTTCCAATTCAAGTCCAGGACCATCACGATTGTTAATTGAAAGTGTTACTTCGACAAATGATAATTCGCCACTGAATTTCCTTTACCAAAATGATCGCGTTCGTTTCTCGCCAGCACTATCACCTTATCTGTACATGAAGACATTCTCATCATCGCAAAGTGAGGATCAACCGAAGCAAGAAGCCGATATTTCATGGAACGGAAGCAATAGTCTAGCAATCCAGAATTCTGAACAAAACTCAACTAGCTCTCGTTACACGCCGTCTTTCGATGATAACAGAAGCAATTACACAGACTTAGATGGCTGCAACAATAAAACCGTTTCGGGTGATGGTGGTCATATTCGTGCACAGTCAACTGATAGTCTTAATATTCGAACTGACGAAAAGATGCCTGCTCGTGGCGAGATTAGCGAACAAGAAAGTAATGGAGAGATTGAGCAACCATGGCATCATCCGtATTTCCAATTGCAAGCTTATCCAAGCTCCTATGACATGGGCACAGCCCAGGAATGCTGGAACCTCTCCAAAGCTGATAGTCAGAACGCGTGTGATTCCAACAACATTCAGAATGTGATAATCAATTTCCCACCTTTGAATGCCCAAGGTGAAGACATTAAGACGCTCAAAACGATAATGCAAACGGTGACTAAGCAAGAGCCTACAGGAATTGACGATGAAGCAAGTGGAAGCAATAGTAATGTAATTGTAAAACGAAATCGAACCTTCAGATGCCCAGAGTgctcaaaattcttttcaaagttGCGAGCAAGAAATCGACACATGGAACAAGTTCACCCACATCTACGTCGAGCTAAGAAAAGCAAGACAGCCCCAACGTCTACGCAAACCAGCAAATCCGAGACGTCTTTGTtcgcatcatcatcatcgctgGTAACTTGGAATGCAACGATTACGTCGCCTGAGCAAGAAGTGAATACACTCAACAACATCAAGAATGAACCTTCGACTTCGGCAGCGGTTCTggtgaaaaatgaaatgaatcgTATGCTCATTAGCACAACTGGATCTATCAAGATGGAAATGGATCGACTGCTTTTGGAACCTTCGACTTCATCTACATCGCAAATATCTACTCTGggattgaaaattaaacgGACTTACATGTGCGCAAGATGTAATGAACAATTCCGAACGTTAAAGCTGTTGGATAAACACTTCCAAATTCACCCCGCTGAATGTACACTTTGTCAGAAGACCTTCAACAGTTGGAATACTTTCTCACTTCATCTGAAACACCATCTTAACATTCGCGTACATGCTTGTCGATTCTGTCCGAAACGATTTGTCCAAAGACAGCGACTGGTCGAACATGAAAGGGTTCACACAGGTTCGATGCCAATTAAGTGTCCACATTGCGATGAACGCTTCCGGCGTTACTCGAACATGCTTCATCATAGAGCGCGTGTTCATTTGAACAAGAAGGCAAAACAGGAAGATTTTGTATGCGATTGCGGCGAGATTTTCCAAACGAAAGCGAAACTCGAGTGGCATCAGGAAACTCATGAGAATAAGCCAAAACCATGTCCTTATTGTCGCGAACGCTTCACACATCGAAATTCGTTGACTAGACACATCCGCCTCTCGCATACGGACAAATATGTCTTCGCGAAGAGCAAAGCAGTGAACTGTCCGATTTGCTCGATGACTTATCTCCCATCAAGTATTAAAGCTCATATGGCGACGCATCAGCTTTCAAACAAGGAGTACTCCTGTTCGATCTGTAGCAAGCAATTCAGCACAAAATGGAATCTGAAGCAGCATCATTGGACACATGCCAATCGAAGCACAAAACCGTTCCAATGCAATATGTGTCCAAGTGCGTTTGTTCGCGAGACCGATTATACAACACACATGAACGCCCACCGCTCAATTAAACCaTTCACTTGCAACACATGTGGAAAGAGATTCGTGAGGAAATACAACTGGTTACGTCACTCTAGGGAACATGAACgcgagaaaaagtttgtttgcgAGACTTGCAACAAGAAGTTCCATCGAGCTTACTATCTTACTGAGCACAAGAGAGTTCATACAGgcGAAAGACCATTTTCTTGCACGATATGTGGTAAAACGTCAGCAACTAAGACTAATCATAACAAACACATCAAAATTCATCATGCGAGAGATCCGCTTACTGCCGAAGGCTAA
- Protein Sequence
- MEQQQCPICMLYLLPGMNLQDHLDTHPKDMIIKALLSAKKEPPKPTVSNETAATVYLTTSAPFNTSQSHIYQDQQQPQQHQQQSPIQNNFALTKRHATNQNNTVVLHNRPYRLTLDAPQAVSNPANTTFLNHPSSVTNDGGDIFDNNKTAAFRCIQQNTEQKNIMIVNTSSTQYIQQTLPVKKPSTANAIELHPVNIDSVPNAISIIPRYTSEKYSGPPPPYSTAISSVTNTINDKPRVIDLTQTPTISTMKVIEKQSGSNNKRTTLSGNGTEENRHLMIRAPQKYLEYTQTENGYIMITEKLISQPSTSQTLNVSHEEEVIEDVPEPNTNDYTIKFVDIDNQMSFDMTGEDGDGKFQEDQQFVIENEEIMQQDDDDVEILPNEKEVPLKAGPSKNNHGVKVLSNVKLTSSTSELFSPSIKDIIQQYNNQTEKGNKSDVVEEISPCSNVAEEENNELSLIQCTETLNLSKEKDESMSACTSVIRKTTIDVDSSATSPQNASSPTEPQPSTSGCMRKSNVVFNSTPTNRLKLNKQPKKLVVKLKKPLLASGEQPSVNAKQEHQEVTSVVDEISIKSEVFEETAIISEKKLSDPQESSPSCKLENEERYDTTFLDHHDYEHVNTIEVTPEIHHDSETNQSLMSMDLEPENNVKREQIEDDFPVVIKQELNTCSTSSSSSTSVSSSNSCSNSSPGPSRLLIESVTSTNDNSPLNFLYQNDRVRFSPALSPYLYMKTFSSSQSEDQPKQEADISWNGSNSLAIQNSEQNSTSSRYTPSFDDNRSNYTDLDGCNNKTVSGDGGHIRAQSTDSLNIRTDEKMPARGEISEQESNGEIEQPWHHPYFQLQAYPSSYDMGTAQECWNLSKADSQNACDSNNIQNVIINFPPLNAQGEDIKTLKTIMQTVTKQEPTGIDDEASGSNSNVIVKRNRTFRCPECSKFFSKLRARNRHMEQVHPHLRRAKKSKTAPTSTQTSKSETSLFASSSSLVTWNATITSPEQEVNTLNNIKNEPSTSAAVLVKNEMNRMLISTTGSIKMEMDRLLLEPSTSSTSQISTLGLKIKRTYMCARCNEQFRTLKLLDKHFQIHPAECTLCQKTFNSWNTFSLHLKHHLNIRVHACRFCPKRFVQRQRLVEHERVHTGSMPIKCPHCDERFRRYSNMLHHRARVHLNKKAKQEDFVCDCGEIFQTKAKLEWHQETHENKPKPCPYCRERFTHRNSLTRHIRLSHTDKYVFAKSKAVNCPICSMTYLPSSIKAHMATHQLSNKEYSCSICSKQFSTKWNLKQHHWTHANRSTKPFQCNMCPSAFVRETDYTTHMNAHRSIKPFTCNTCGKRFVRKYNWLRHSREHEREKKFVCETCNKKFHRAYYLTEHKRVHTGERPFSCTICGKTSATKTNHNKHIKIHHARDPLTAEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -