Sate009461.1
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- -
- Assembly
- GCA_033063855.1
- Location
- CP093831.1:1063787-1065882[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0068 0.28 11.7 2.6 2 23 172 194 172 195 0.92 2 14 0.00016 0.0068 16.8 6.1 1 23 200 222 200 222 0.99 3 14 0.003 0.12 12.8 0.6 1 23 231 254 231 254 0.93 4 14 0.00065 0.027 14.9 1.2 1 23 261 284 261 284 0.97 5 14 5.1e-05 0.0021 18.4 0.5 1 23 293 316 293 316 0.96 6 14 0.0019 0.077 13.4 2.3 3 23 325 347 323 347 0.94 7 14 8e-05 0.0033 17.7 0.3 3 23 355 376 354 376 0.96 8 14 0.025 1.1 9.9 4.4 1 23 382 404 382 404 0.97 9 14 0.9 37 5.0 0.7 1 23 413 438 413 438 0.92 10 14 0.027 1.1 9.8 1.2 5 23 448 467 446 467 0.93 11 14 0.0013 0.054 13.9 3.9 1 23 473 496 473 496 0.96 12 14 7.7e-06 0.00032 20.9 1.4 1 23 502 524 502 524 0.98 13 14 0.064 2.6 8.6 3.7 1 23 529 553 529 553 0.96 14 14 0.0004 0.017 15.6 6.8 1 23 559 583 559 583 0.98
Sequence Information
- Coding Sequence
- atggATGGAGCGATATTAGAcgaatttgattttagaGATCATCAAAATAAGTGTCGTCTCTGTATTAAGTCCTTCAATCACGATGAGCATCGCATAGAAATCAATCAGCaaatcgagaaaaagttACGAGAAATCACAGAACTCAAGTTGACCGATGAATtctcaaaggaaatttgtgTCGTGTGCAGTTATCAAATCACTAAGTACTGTCAATTTAAGAGGAATGTGGTGAATTCTCAGAAACAACTTTATAATTTTGCTGCGAAAGCGAATcttgaagaacaagaaagCAACCAAATTTACGTTTTCTTTGACGATGCAATAAAgcaagaaaatgatgaatgtGCGATATTAATCGAACATCCAAATGAAGGCGATGAGCAAGATTTAATTAAGGAGGAAGTCGATGAACAATCAGAGAACCTGATCAAGGACGAAGAAAGATTGGAAGCAATCCAGAATCATCAGACCAACattgagagaagaagaaagtctGGAAGGGTTGGATCAAACTCGTGCCCACATTGtgatataaaaatatttgagcgATCACAGTTGAAACGACACATCGAACGAatcCACCATAAAATCAAGAACTTCAAATGTGATCAATGTGATTATAAGTGCTACTTCAAATATGCGCTCAAAAGTCATATGAGAACTCATATCGATAAGGACGAaagaagaacattttcatgttcCGAGTGTAATTTTGTTACTGTTTCAAAAGAGAGCTTGCGAGCTCACAACAATCAATCTCATTTGACGAAAGGACAAAGCTACGAATGTTTAATTTGTCAAATTACATTCGATTCTTACAATCAGCTTTACCGCCATCGACTGAAATCTCATAAAGGAGTCGATACGATAGCCAAATACGTTTGCAGCTTCTGCGGGAAGTCAATGACTTCAGCTTCGACTTTAAAGAATCacatttcgatttttcacTCCAGCGAGAAGCCAAGCCTTCATTGCCCATTTAAAGGTTGcgtgaaagttttcatcacGCTTAAACAACTCAACAAACATAAGAAATCACACGATGAAAGTTTGAAGGAAATATGCTCAGAGTGCGGACTTGTTTTTGCCAACAAAACTTCACTCGACAAACATACGAAAAGAGTTCATTTGAAGCTCAAGGACTTTTGCTGTGATTTGTGTGACTTCAAAGGCTGTTTCAAATCCAATCTAGCTGAACATaTGATTAAGCATTTGGACAGCAGCGAGCGCGAGAAATATTATTGTAACGAGCCAGACTGTGTATATCAAACGTTATCGAAAACATCTCTTCGAAGTCATTACCGTTCTGAACATTTaggcgagaagaaaacttacaTCTGTCATTGCGGAAAGAATTTCACGCTGAGCGGCTCTTTCCAGGCACACGTGAAGTTCGTTCATGAGAAGCAGAAGAGCCACAACTGCAAGTTCTGCTCGAAGTCTTTCTTTGTCAAATCGGTGTTGAATAAACACATTAAGATTAATCACTTGAAGCAACGAGATTTCCCTTGTGAAATttgtaagaaaaattttgcAACAAAAACATATTTACGTGGTCACATGAAATATCACGAAGAACCTCAATTTTGCTGCAATTTCGAGAATTGTACGAGCTCCTTCTTCACGAGTCAAATGCTCACCTCACATATTAAAGTCCACAACaatcaaagagattttaaatgtCCAGTTCATCTCTGCGAAAAAAGTTACTTTCATAAATCTCAtttaaagaaacatttgCTCATTCACGGAATTCatgaataa
- Protein Sequence
- MDGAILDEFDFRDHQNKCRLCIKSFNHDEHRIEINQQIEKKLREITELKLTDEFSKEICVVCSYQITKYCQFKRNVVNSQKQLYNFAAKANLEEQESNQIYVFFDDAIKQENDECAILIEHPNEGDEQDLIKEEVDEQSENLIKDEERLEAIQNHQTNIERRRKSGRVGSNSCPHCDIKIFERSQLKRHIERIHHKIKNFKCDQCDYKCYFKYALKSHMRTHIDKDERRTFSCSECNFVTVSKESLRAHNNQSHLTKGQSYECLICQITFDSYNQLYRHRLKSHKGVDTIAKYVCSFCGKSMTSASTLKNHISIFHSSEKPSLHCPFKGCVKVFITLKQLNKHKKSHDESLKEICSECGLVFANKTSLDKHTKRVHLKLKDFCCDLCDFKGCFKSNLAEHMIKHLDSSEREKYYCNEPDCVYQTLSKTSLRSHYRSEHLGEKKTYICHCGKNFTLSGSFQAHVKFVHEKQKSHNCKFCSKSFFVKSVLNKHIKINHLKQRDFPCEICKKNFATKTYLRGHMKYHEEPQFCCNFENCTSSFFTSQMLTSHIKVHNNQRDFKCPVHLCEKSYFHKSHLKKHLLIHGIHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -