Basic Information

Insect: Smittia aterrima
Gene Symbol: -
Assembly: GCA_033063855.1
Location: CP093831.1:7444906-7446945[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 9.7e-05 0.004 17.5 1.4 1 23 152 174 152 175 0.96

2 14 0.68 28 5.4 0.2 1 23 183 211 183 211 0.94

3 14 0.0039 0.16 12.5 2.2 2 23 234 256 233 256 0.96

4 14 0.0027 0.11 12.9 5.3 1 23 263 285 263 285 0.98

5 14 0.5 21 5.8 0.3 3 23 299 319 298 319 0.95

6 14 0.0031 0.13 12.8 1.6 2 23 367 388 366 388 0.95

7 14 0.44 18 6.0 3.5 1 23 394 416 394 416 0.97

8 14 0.036 1.5 9.4 0.1 1 23 419 442 419 442 0.97

9 14 3.7e-05 0.0015 18.8 0.8 3 23 450 471 448 471 0.95

10 14 0.00015 0.0061 16.9 0.5 1 23 477 499 477 499 0.98

11 14 1.4e-05 0.00058 20.1 3.4 1 23 505 527 505 527 0.96

12 14 0.0014 0.058 13.8 0.7 1 23 536 560 536 560 0.96

13 14 7e-06 0.00029 21.1 0.1 2 23 567 590 566 590 0.95

14 14 0.017 0.71 10.4 0.2 1 23 596 620 596 620 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	9.7e-05	0.004	17.5	1.4	1	23	152	174	152	175	0.96
2	14	0.68	28	5.4	0.2	1	23	183	211	183	211	0.94
3	14	0.0039	0.16	12.5	2.2	2	23	234	256	233	256	0.96
4	14	0.0027	0.11	12.9	5.3	1	23	263	285	263	285	0.98
5	14	0.5	21	5.8	0.3	3	23	299	319	298	319	0.95
6	14	0.0031	0.13	12.8	1.6	2	23	367	388	366	388	0.95
7	14	0.44	18	6.0	3.5	1	23	394	416	394	416	0.97
8	14	0.036	1.5	9.4	0.1	1	23	419	442	419	442	0.97
9	14	3.7e-05	0.0015	18.8	0.8	3	23	450	471	448	471	0.95
10	14	0.00015	0.0061	16.9	0.5	1	23	477	499	477	499	0.98
11	14	1.4e-05	0.00058	20.1	3.4	1	23	505	527	505	527	0.96
12	14	0.0014	0.058	13.8	0.7	1	23	536	560	536	560	0.96
13	14	7e-06	0.00029	21.1	0.1	2	23	567	590	566	590	0.95
14	14	0.017	0.71	10.4	0.2	1	23	596	620	596	620	0.94

Sequence Information

Coding Sequence: ATGAGTGAAACTTGTGCTGCTGTGTGCAGATTGTGTTTACAAGAAGGCTTTGAGTTAGCGTCGGTGTTTCAGTATCGCAAAGGAAAGCTCGTAGCCGAATTAATTAGAGAAATAATTCCTGAAATAAACATTGACCGAAAAGACAATCTATCACAACAAATATGTGTTTCGTGCCTTTCTGTTGTGCTCAACGCATGTGATTTAAGATCAATAAGTATAAAAAATGATGTTGCCGAAAGAGAACGCAAAGCTGAAATCACGTCAGTGAAGATTGAACCATTCGACATTAAacaagaagatttcattgaaaataatttcgtgGAAAATCTTCACACCTTCAAAGAAAGTGACGAGATGTCACCCAGAAATAATTATAACTCTGATAACAGTTTAGATTACGAAAATGATCAACGAAAGAGGACCAAGTTCTACATGCAAGAAAATTTAGCGGATTTTGAATGTCGATACTGTGGTAGATACCTCACAAGCAATTCAATGCTCATACTGCACATCAAAGTTCATCACCCAACGGAGAATCaaggaaagtttaaatgCGACATCTGCGAGCTCCAAGGAGAATCgagaattttcaaacttAAAACTGGAATCGAGCAACACATGCAATCCAGTCACTCAAGCGAAATTGCTAAAAGACCTTGCAATAGAAATTCGGTAAAATTATCGAATGAGAAGAGTTTGAACTGCAATGAGTGCAAGACTTATTTCCAAACGAGAGCCGCATTTATGAAGCATCAGAAGAAATATCATGCCGAGAAGGTCACCACTTTCACATGCAAATTTTGCGCAACAAGAttcagaaaacaaaagtcttATGAGAAGCATATGACTAAACATGGAAAGCTGCCTTATGGACCAAGAGCACTCTCAAAAATTTGCGACGTTTGTTTCCTTGAATTCAACAGTCGTCCTGAGATGCGATTACACAAGTTTATTCATTGTGACTTCGTTGAGGAGTATGAAGAACCGGAACAAAAACTCTACGCCTGTGCGCTTTGTAAATTCGATTCATATTTCGAAGAGgaaattaaaactcatCTGGTCAATCATAAGTCTGACTTCTCTCCTCAAGCAATTCTAGTCTGCCTGAGGTGTTCCTGGACGTTTACAGATTATGAGATGTTGTGCAAACACACAGAAATGCACAATATGAAAATAACTCATCGCTGTTTGCGCTGCCTCAAGAAATTCTCATACGGCCCTAAATTTCTTCGTCACATTGAGAGACATCTCTCGTATACTTGTGATCTTTGTGGAACAAATGAATCGTCAAAAGGACGATTGGAGGATCACATCAAAGTAGCGCACATGAAAGTCGTTATGCATCTGTGTCCCATCTGTGGAGAATCTAGAAAAACCAGCGGAAGTTTACAATCTCACATCAGATCACGACATGATGGTGAACGGAAATTTCAATGTACGCTGTGTCCTAAAGCTTTTCTTACTCCAACCTACTTGCGAAATCATCAAAGTGTTCATTCAAATGAGTTGaaCTTTCCCTGCACAAAATGTCCAAAGAAATTCAGAACATTTCGCAATCTTAAACGACATCAAGTTTATCATGATCCGTCTAAACTCAATTACAAACATGTTTGTGATCAAGAAGGCTGCGGtagaagttttcttaataaatttgGACTTGACAGACACATGCTTACTCACACAGGACTCCGACCTTGGGTTTGTTCAGTGGTTGGATGTGACCGAGCTTTCTCACAAAGTAACGATCTAAACAAACATCTTCGCTCTCACTATGGAGATTGTATCTACAACTGTGACTTTCCTGGATGTTCAATGGCATTCAAGCTGAAAGGCGAACTTCGGGAACATCAGACTGATCATtacaaaaagtaa
Protein Sequence: MSETCAAVCRLCLQEGFELASVFQYRKGKLVAELIREIIPEINIDRKDNLSQQICVSCLSVVLNACDLRSISIKNDVAERERKAEITSVKIEPFDIKQEDFIENNFVENLHTFKESDEMSPRNNYNSDNSLDYENDQRKRTKFYMQENLADFECRYCGRYLTSNSMLILHIKVHHPTENQGKFKCDICELQGESRIFKLKTGIEQHMQSSHSSEIAKRPCNRNSVKLSNEKSLNCNECKTYFQTRAAFMKHQKKYHAEKVTTFTCKFCATRFRKQKSYEKHMTKHGKLPYGPRALSKICDVCFLEFNSRPEMRLHKFIHCDFVEEYEEPEQKLYACALCKFDSYFEEEIKTHLVNHKSDFSPQAILVCLRCSWTFTDYEMLCKHTEMHNMKITHRCLRCLKKFSYGPKFLRHIERHLSYTCDLCGTNESSKGRLEDHIKVAHMKVVMHLCPICGESRKTSGSLQSHIRSRHDGERKFQCTLCPKAFLTPTYLRNHQSVHSNELNFPCTKCPKKFRTFRNLKRHQVYHDPSKLNYKHVCDQEGCGRSFLNKFGLDRHMLTHTGLRPWVCSVVGCDRAFSQSNDLNKHLRSHYGDCIYNCDFPGCSMAFKLKGELREHQTDHYKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -