Sate007446.2
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- -
- Assembly
- GCA_033063855.1
- Location
- CP093830.1:13771854-13774092[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.16 6.7 7.4 1.9 1 23 41 66 41 66 0.96 2 19 0.0055 0.23 12.0 0.7 2 23 75 97 74 97 0.95 3 19 0.59 25 5.6 0.1 7 23 110 126 104 126 0.87 4 19 0.0015 0.062 13.8 4.6 2 23 133 154 132 154 0.96 5 19 0.014 0.59 10.7 2.3 1 23 158 181 158 181 0.92 6 19 0.053 2.2 8.9 3.7 1 23 187 210 187 210 0.96 7 19 0.0069 0.29 11.7 0.9 1 23 219 241 219 241 0.95 8 19 1.3e-05 0.00053 20.3 1.0 2 23 248 269 248 269 0.97 9 19 0.081 3.4 8.3 0.2 1 21 275 295 275 296 0.96 10 19 0.0097 0.4 11.2 2.1 1 23 420 442 420 442 0.98 11 19 0.00027 0.011 16.1 1.7 1 23 448 471 448 471 0.93 12 19 0.016 0.65 10.5 0.6 1 23 482 504 482 504 0.95 13 19 0.0011 0.044 14.2 0.1 1 23 511 533 511 533 0.97 14 19 0.00086 0.036 14.5 2.4 1 23 539 564 539 564 0.95 15 19 0.88 37 5.0 2.0 2 23 572 593 571 593 0.94 16 19 0.016 0.65 10.5 2.7 1 23 602 625 602 625 0.86 17 19 0.09 3.7 8.1 1.0 1 23 634 657 634 657 0.94 18 19 0.00047 0.019 15.3 1.8 1 23 663 685 663 685 0.94 19 19 0.0019 0.079 13.4 2.2 1 23 692 715 692 715 0.97
Sequence Information
- Coding Sequence
- ATGGAGTCTCAAGAGATACAGGAATATCGGAGACCTAAgcgtgaaattatttctaaacTAAATCACTTGACTGCAGAAGAcattgaagaagagaaaccgataaaaacaaaaatcaagaaattcaacTGCTCGAAatgcaaaacaaacaaatcctTTTTGACTCAGAAGCAACTTGATCGACATATTCAATCAGCgcacaagaagaaagaagagaagaagattaCCTGCGACATTTGctcgaaaaacttgaaatctgAAATTTATCTGAAGCGACACAAAGCAACAAGACATAGAGAAACTCCAAGAGTCTTCATTTGTGACTATGATGGAAAATCCTTTACTGCCAAAGATTACATTCGTATTCACATGGATCGGCATCGATTGCATCAAATCCTATCTTGCTCTGTTTGTCAGCGACGCTACATTAGCAAACACACATTCCGACGACATTTGAAATCTCATATTGAGAAACATTCTTGCTTGATTTGTGGCATGACGTTCGGTCAGAAAACACTTCTCGATAATCATCACGTCTCAAAACATACTTTCGACTATAACTACTCGTGCGATTTCTGCACTCGCAAGTTTCCGAGTAAAACGGCTCGTAACAATCATCACTACACAGCGCATAAGGATAAAACTAGTCAGTTGAGTTTTCAATGCAAGGAGTgcaagatttattttgagatGAAGGAGGAACTTCGTATTCACagcttcattcatttcaacgGAGAAATCAGAACTTGTCTGGACTGTGGTCAGatctttaaaacaaatcgttTGCTCAAAATTCACATGCAGAAAcatgaaacaaacaaatcatttcaatgtAATTCGTGTGGCgatttatttacattcaaGACTGGATTAGCGAAGCATGTTCGATTAAATCGCTGCAAAGGACCTGTAGTTAACGATGATGAAGCGAATGCAGAAGAAATGGAAGAGGAAGTTGCTGTTGAGCTTGCCAGGAAGCAGCTCAGTGAAATTTCAAAGCGATTAGGGCAAAAAACTGTTCTAAAtgttgagaaagaagaagagactCTGGAAGAGCAGAATGAAAACGTTGAACCTGCAAACGAATCTGAATCGGAAACAGAGAATAATATCGAGGAAGTCTTTAATTCACttgaattcaaaaacaaatcgttATCAAGGactgaagaaacaaaagttgaaactaAGGAGACGAggaaatcaagaaagaagaaaattactcATCCAATCAAGTCAAGACAAGGAAGACCACATCTAATTTACATTTGTGACTTTTGCGGCGAAAAAGtcaaattcaaaaaagaaattcttaatCACATGAGACATCACACAAGCGAAAAGAAGTACAAGTGCAAGGAGTGCTCGACATCATTTAAAAGTAGGAAGAAACTTATTGAGCATTCCAATGAAGTTCACGGGATTAAGTTATTGACTGTGAGCGAAGCCTTCTCTTGTGAAGTTTGCGATAAgaagtttgatttgaaaagcATATACGAAGCTCACAAGTTAAGTCATGACGACACTGCAAGGCCGTACATTTGTTTAATGTGCTCAGCagcttttaaaagcattGGCAACCTGAACCGGCATGAAGCAACTCACATCACAGCAAGAAATTTCGAATGTAATCGTGAACATTGCAATAAGCGATTCAAAACGAAGCTTGCGCTAAAAATCCATAACGAGACTGTTCATCCTGAAGTCAAAGTTTTCGTCAAGTGTCATATCTGCGATACACTCattcaagagaaatatttcaaggtGCATATGAGGAATCAACATACAGAAGAGGGAAAGGAGAAACCCTTCTGTTGCACGATatgcaataaaacttttaaaacgGAGAAACTTGGCCAACGACACTACGAAGCTGTGCATGACCCGAAGAGTCATGGAATAATCTATTCATGTCCTCAGTGTCCCGAATTACAATTCTATCGTCAGCGAGATCTTAAACAACACTCTTTTATGCATTTTGAaggaataattttccattgcgAGATTTgctcaaaaatgtttaagaaCAAACGTCTTCTTTCGATCCATAACGCAGTGCATAACGTAGATGCTGGGAATTTCGAGTGCAAGCATTGCAATGTTATCTTTAAAACTCGAGGTGGTCGAAGAAAGCATGTAATGCGAGTTCATGTTAAAGATGAAGAGAAGACAGCAATAAAACTCTGA
- Protein Sequence
- MESQEIQEYRRPKREIISKLNHLTAEDIEEEKPIKTKIKKFNCSKCKTNKSFLTQKQLDRHIQSAHKKKEEKKITCDICSKNLKSEIYLKRHKATRHRETPRVFICDYDGKSFTAKDYIRIHMDRHRLHQILSCSVCQRRYISKHTFRRHLKSHIEKHSCLICGMTFGQKTLLDNHHVSKHTFDYNYSCDFCTRKFPSKTARNNHHYTAHKDKTSQLSFQCKECKIYFEMKEELRIHSFIHFNGEIRTCLDCGQIFKTNRLLKIHMQKHETNKSFQCNSCGDLFTFKTGLAKHVRLNRCKGPVVNDDEANAEEMEEEVAVELARKQLSEISKRLGQKTVLNVEKEEETLEEQNENVEPANESESETENNIEEVFNSLEFKNKSLSRTEETKVETKETRKSRKKKITHPIKSRQGRPHLIYICDFCGEKVKFKKEILNHMRHHTSEKKYKCKECSTSFKSRKKLIEHSNEVHGIKLLTVSEAFSCEVCDKKFDLKSIYEAHKLSHDDTARPYICLMCSAAFKSIGNLNRHEATHITARNFECNREHCNKRFKTKLALKIHNETVHPEVKVFVKCHICDTLIQEKYFKVHMRNQHTEEGKEKPFCCTICNKTFKTEKLGQRHYEAVHDPKSHGIIYSCPQCPELQFYRQRDLKQHSFMHFEGIIFHCEICSKMFKNKRLLSIHNAVHNVDAGNFECKHCNVIFKTRGGRRKHVMRVHVKDEEKTAIKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -