Sate006112.1
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- -
- Assembly
- GCA_033063855.1
- Location
- CP093830.1:6189472-6193633[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0026 0.11 13.0 0.5 1 23 186 209 186 209 0.96 2 24 1.8 76 4.0 0.1 2 23 248 270 247 270 0.93 3 24 0.042 1.7 9.2 1.3 1 23 337 360 337 360 0.93 4 24 0.00068 0.028 14.8 1.3 1 23 487 510 487 510 0.98 5 24 9.5 3.9e+02 1.8 0.8 2 23 551 573 550 573 0.91 6 24 0.00092 0.038 14.4 0.5 1 23 638 661 638 661 0.96 7 24 0.79 33 5.2 0.3 2 23 702 724 701 724 0.92 8 24 0.013 0.55 10.8 1.1 1 23 781 803 781 803 0.98 9 24 1.9 78 4.0 0.5 1 23 810 833 810 833 0.94 10 24 2.5 1e+02 3.6 0.0 2 23 843 865 842 865 0.89 11 24 0.0014 0.057 13.9 0.7 1 23 895 918 895 918 0.96 12 24 0.4 17 6.1 0.1 3 23 927 948 925 948 0.89 13 24 0.052 2.1 8.9 0.1 1 23 957 980 957 980 0.93 14 24 0.049 2.1 9.0 6.1 1 23 993 1015 993 1016 0.95 15 24 0.038 1.6 9.3 1.2 1 23 1020 1043 1020 1043 0.92 16 24 0.00041 0.017 15.5 1.1 2 23 1060 1081 1059 1081 0.96 17 24 0.11 4.5 7.9 1.2 1 23 1117 1139 1117 1139 0.96 18 24 0.062 2.6 8.7 0.2 2 23 1149 1171 1148 1171 0.95 19 24 2.1 87 3.8 0.0 1 23 1177 1200 1177 1200 0.92 20 24 0.0022 0.09 13.2 3.3 1 23 1208 1230 1208 1230 0.97 21 24 0.0005 0.021 15.3 0.4 1 23 1236 1258 1236 1258 0.97 22 24 0.017 0.73 10.4 6.5 1 23 1266 1288 1266 1288 0.97 23 24 1.7e-06 7e-05 23.0 0.7 1 23 1294 1317 1294 1317 0.97 24 24 0.0042 0.17 12.3 0.0 1 23 1323 1345 1323 1345 0.97
Sequence Information
- Coding Sequence
- ATGGCTCAAAGCTGCCGCTTGTGTCGAAAGGCTGATGACGGCTTCTTTGAATCTCTTTTTGAATATAAAGATGGACAACAAATCGCCGAGGTTGTTCAGAAAATTTGcgaaattgaagtttcaaagGAAGATAAATTTCCAAAGAATATATGCGAAGAGTGTTTAGAAaTATCTCTCAGTgcttttcaacttcaaaagaTAAGTCAAGAAAGCGACAAGTTCTTTCGAGCCCAAATCTTTTCTGGTGTCATCAAAGAAGAGCCTACAGAATTCTGTAAAGTGGAAGACCAAGAAAATGATGGagatattttccatttagGAGGTGAAGAGTCCTACGAAAGCTCCCCATCACAAAAGACCGGCTTGATGCAAGACAGaagttcaagaaactttttcgacttgggaattgaaaatgtcaaagttGAATTCAACAGTGGATCTGAAGCCGAATCAACAAGTGAAATCATCAAGTCAccgagaaagaaagagaaaaagacGAAATTTCATCCACAAATTGTTCCTGGTTCAGTTCTCAAACCTTGTTCAGAGATTTGGTATTCGTGCAATTTCTGTGACAAACAGCTGAAGCCACGACCTAATATGATTCGACATATGAACTTACTTCACGATCCTCTGACCAAACCTTACGCTTGCAAGTATTGCATTCTTCGATTcgataaaaagaagaagagagatTTCCATCAAAGTTTCCACAGCGACGATGAAGCAATTGAAGTAATTGTTTGTGACATTTGTGGAGCCACTGGAAACAAAGTCGAAGGAATGGAACATCATAAAAGATACGATCACAGCAGTGATCAAAGACAGAATCGTTCAAGAATCGAAAGtagcgaagaagaagaagttagaaatgatgaaagtttcagtAACGATTCTTCTGAAAGTGATGAACGAGTTTTAAAACGAGTTGTGAAACCGCGAATTAAATCATTCTTTCATCCACGTATCACTCCTGGTTCTATTCTTAAGCCAGTCACAGAAGTTTGGTATGATTGCAACTTTTGTGAGAAGAAACTTAAGCCACGTAATAACATGTTGAGACATATGACTGCCTTCCACGACCCGATTTCCAAACCGTTTGGTTGCCAATATTGTATTCTACGTTTCGACagtgagagaaagaaagatttacACGAAACATCGTTCCACGAAAATGAAGAACCGTCAATCTACTTCTGTGATGTCTGTGGAGCGAGTGGAAGCTTAGAACAAGGAATGAAGTTCCATATGCAAGACGATCACAAAAACCTTTCTTCcgatttaaaaaatattaagcCAAGACCTAgcacaaaacgaaaattcaaACCAGATGAAAATTCGAATGATTCAGAAATCGTCTCAAGAAAGTCCGAGAAAGTTATCCGAAGAAAAAGTTCCACAGTTTTCCATCCTCGAATTACTCCTGGATCCGTTCTCAAACCATGTTCAGAAATTTGGTATTCGTGTAACTTTTGTGATAAGAGTTTGAAGCCACGACCCAACATGCTCCGGCACATGATGAAATTTCACGATCCAAAATCAAAACCGTTCGCTTGCAAGTTTTGCGTTATGCGATTCGATAACGCtggaaagaaagaatatcACGAGTCAGCAGCAcatgatgacgatgaaaaattacCTCCTGTGCTTTCCTGTGGTGTTTGCGGAGCGACTGGAAACCACGAGATAGGAATGAAGCATCATAAGAAAGACGATCACAATCCTAAATTACAAGAAATTGCAAGATTTAAACCGTCCACCAAAATAAGATCATCGGAAGAGGAGGATAATTCTACTGACTCAGAAATCGAACCAAGAAGATCAGACAAAATTGTTCGAAAAAgtgagaaaacaattttccatcCACGAATTACTCCTGGATCCGTTCTCAAACCTTGTTCAGAGATTTGGTATTCGTGCAATTTCTGTGATAAGAGTTTGAAGCCACGACCCAACATGCTTCGGCACATGATGCTGCTTCATGATCCTCGAACTAAACCATTCGCTTGCAAGTTTTGCGTTATGCGATTCGATACCGACATAAAGAAAGAATATCACGAGTCCACTGCGCATGAAGATGATATTGAATTGAATCCTGTTCTCGTTTGTGACATCTGCGGAGCAACTGGAAATCACGAAAAAGGAATGCGACAGCACAAGAAAGACGATCATAATCCCAAGATTCAAAAAATTGTAAGATTGAAAACTTCTAACGGAATGAAAGCATCAGACGAATCATCTaatgaagaggaagaaaggGATGGAAACGTTTCCTCAAGTGAAAGATTCAATCCACGGCAGTTGCCGGGTTCCGCTTCATCAAAATTAGATGACGTGGTTTTCTCTTGTAATTTCTGCGATCAGCGAATGAAGCAACGAGCAAATATTCTCAATCACATGAAAGTTCATGATCCAGTAGAGTTTCCGTTCGCTTGTCGTTACTGCATCTCACGATTCAAGACAGCTGACGAGTGGAATGATCATGAAAACAAGCAACACGACGGAAACAGCGAAGTCAAGACTATTGTTTGTGATATTTGTGGAGCGACAGGCGACAATCTTGAAGGAATGGAAAACCACAAAATGGACGACCACAGACGAGAATCAATGATCGCATCGAACGCAATATTCAATCCACGACCTGCTCAAGGCATTGCACGCTTAGAGTTATCAGAAGTGTTGTTCGAGTGCAATTTCTGTGAAAAAGTTCTTAAGCCAAAGAATTACCTTGTGCAGCACATGCGAGCGAAACACGATCCTTCAATCAAACCATTTGGCTGTGAATACTGCGTTTTAAGATTCAGAATAAAATCAGATTTGCTCGATCATGAAGCAGAAGCTCATGAAAAATCGGAACAGAAATCGATTTACTTTTGCGATATTTGTGGTGTGAGCGGCAACAAGAAAGACGGAATGGAGAATCACATGACAGATGATCATCTTAAGATAACTCAAAAAGTCGAAGATGAGTATATTTACAATTGTCCAAGATGCAAAGCAAAGTTCAACCGAAAAAGTTTCCTAGACCATCATCTCATGTTCCATCACGAGGAAAATTACAAATGCTCTCGATGTAGCGAGACATTTAGTgacaagaaaagaagaatcaatCACGTTTTGCTTGTTCATGACAAACTGATCACCGAACTCGAACCCCACGAAGTCATACAAGAACTTAAATGTTGTGGATGCACTAAAGAGTTTTCAACAGAAGCTGAGCTCACAACACATCTCGCGAGTCATCGCCAAGGCTTCGTCTCCATTCCTTGTAAACTGTCTTGCGTCATTAAACTGCATACATTTGATTCCTTTGTAGCTCATTCAAATTATCATTCGAAGGCAAAAACTCATCGATGCTTAAAATGTTCGAAAGTGTTTCCGCTTGaccgaaagctttttgctcATGTCGCGAGTCACAAGAGGAGCGAACAGCCTCGTAGCGTGAAATGTGGAAAATGTGGCAGTGGATTTAGAACCGTTAAAGAACTTGATGTTCATGAAAAAGTCAAACATCAGAATCAAACTCTTTTCATCTGTCCTTTCTGTGCCAAATCGCTAGCATCAGCGGCAATTCTTGATACTCATATCCGATTCGTACAcaatcgagagagagaagaaaagtttgaatgcCAAGTTTGCAATCGGAAATTCATGAGAAACACTTGTTTGATTCGACACAGCGCAACACATCGAACGGAGAGGCCTCACGTTTGTGAACAATGTGGAGCGAGCTTCAAGACAAAGGAAGGCATTGCAATTCATCTGAAACGTCACGACGGAAcgtttttgaagaaatttgattgtaATCAATGCAGCCACAAGTTTACGAGTCGACATCGTTTAAAAGTTCATCTGTTGACGCATTCTGGAATTaaACCTTACGAGTGCACCTACTGTGATCGAGCATACACTTCAAAAGGCGATCTCACCAAACATCTTCAGAAAGTTCATGTTGGAGATGCCGTTTATCAATGCGAGAAATGTCCACTCGCCTTCCCGAAAATCGTAGATTTGCGAGAGCATCTTGTCGTCCATGCacagaataattaa
- Protein Sequence
- MAQSCRLCRKADDGFFESLFEYKDGQQIAEVVQKICEIEVSKEDKFPKNICEECLEISLSAFQLQKISQESDKFFRAQIFSGVIKEEPTEFCKVEDQENDGDIFHLGGEESYESSPSQKTGLMQDRSSRNFFDLGIENVKVEFNSGSEAESTSEIIKSPRKKEKKTKFHPQIVPGSVLKPCSEIWYSCNFCDKQLKPRPNMIRHMNLLHDPLTKPYACKYCILRFDKKKKRDFHQSFHSDDEAIEVIVCDICGATGNKVEGMEHHKRYDHSSDQRQNRSRIESSEEEEVRNDESFSNDSSESDERVLKRVVKPRIKSFFHPRITPGSILKPVTEVWYDCNFCEKKLKPRNNMLRHMTAFHDPISKPFGCQYCILRFDSERKKDLHETSFHENEEPSIYFCDVCGASGSLEQGMKFHMQDDHKNLSSDLKNIKPRPSTKRKFKPDENSNDSEIVSRKSEKVIRRKSSTVFHPRITPGSVLKPCSEIWYSCNFCDKSLKPRPNMLRHMMKFHDPKSKPFACKFCVMRFDNAGKKEYHESAAHDDDEKLPPVLSCGVCGATGNHEIGMKHHKKDDHNPKLQEIARFKPSTKIRSSEEEDNSTDSEIEPRRSDKIVRKSEKTIFHPRITPGSVLKPCSEIWYSCNFCDKSLKPRPNMLRHMMLLHDPRTKPFACKFCVMRFDTDIKKEYHESTAHEDDIELNPVLVCDICGATGNHEKGMRQHKKDDHNPKIQKIVRLKTSNGMKASDESSNEEEERDGNVSSSERFNPRQLPGSASSKLDDVVFSCNFCDQRMKQRANILNHMKVHDPVEFPFACRYCISRFKTADEWNDHENKQHDGNSEVKTIVCDICGATGDNLEGMENHKMDDHRRESMIASNAIFNPRPAQGIARLELSEVLFECNFCEKVLKPKNYLVQHMRAKHDPSIKPFGCEYCVLRFRIKSDLLDHEAEAHEKSEQKSIYFCDICGVSGNKKDGMENHMTDDHLKITQKVEDEYIYNCPRCKAKFNRKSFLDHHLMFHHEENYKCSRCSETFSDKKRRINHVLLVHDKLITELEPHEVIQELKCCGCTKEFSTEAELTTHLASHRQGFVSIPCKLSCVIKLHTFDSFVAHSNYHSKAKTHRCLKCSKVFPLDRKLFAHVASHKRSEQPRSVKCGKCGSGFRTVKELDVHEKVKHQNQTLFICPFCAKSLASAAILDTHIRFVHNREREEKFECQVCNRKFMRNTCLIRHSATHRTERPHVCEQCGASFKTKEGIAIHLKRHDGTFLKKFDCNQCSHKFTSRHRLKVHLLTHSGIKPYECTYCDRAYTSKGDLTKHLQKVHVGDAVYQCEKCPLAFPKIVDLREHLVVHAQNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -