Sate007447.2
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- -
- Assembly
- GCA_033063855.1
- Location
- CP093830.1:13774269-13776341[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0056 0.23 11.9 1.7 1 23 26 48 26 48 0.94 2 17 0.12 5.1 7.7 0.1 7 23 59 75 53 75 0.86 3 17 4.5e-05 0.0019 18.5 2.2 2 23 82 103 81 103 0.98 4 17 0.00045 0.018 15.4 3.0 1 23 107 130 107 130 0.95 5 17 0.1 4.3 8.0 2.4 2 23 137 159 136 159 0.94 6 17 0.00088 0.037 14.5 0.1 1 23 169 191 169 191 0.97 7 17 0.0005 0.021 15.2 2.5 1 23 197 219 197 219 0.97 8 17 7.5e-06 0.00031 21.0 0.2 1 21 224 244 224 245 0.96 9 17 0.0072 0.3 11.6 5.1 1 23 377 400 377 400 0.96 10 17 0.75 31 5.2 0.8 2 23 415 435 414 435 0.86 11 17 0.00016 0.0065 16.8 0.5 1 23 440 463 440 463 0.97 12 17 0.0053 0.22 12.0 2.8 1 23 469 491 469 491 0.91 13 17 1.8 74 4.1 0.2 2 23 499 520 498 520 0.91 14 17 0.00076 0.032 14.7 1.2 5 23 531 550 528 550 0.93 15 17 1.8e-05 0.00073 19.8 1.0 1 23 559 581 559 581 0.91 16 17 0.025 1 9.9 0.6 5 23 590 608 588 608 0.93 17 17 0.0045 0.19 12.2 1.0 2 23 614 636 613 636 0.94
Sequence Information
- Coding Sequence
- ATGGCATTTAAAGCTAATCAGAGTGAGAAACtatcaaaaagaaagaagaaatcgaaagcaAGCAGATCAACTGAGTTTTATTGTGAGATTTGCTCGAAACAACTTTCTTCGTTCAGCAATTTTATAAGACACAATGTCAAACATCAACCGAAGAACTACATCTGTGATTACGAAGGCAGGAACTTTAACACGAAAGACAAGCTACGATTGCATATCCTCCAACATCGAATCCATTATCGAGTTCAATgcaaagtttgtttgaagtCTTATACAACAAATCAGTCgatgagaaaacatttgagaaCTCATTTTGAACACCATCAATGCGATCAATGTGGACAAACCTTTAAGCATAAACTACTGTTGCTGAATCATGTGTCATCGATTCATGTTGACGAACAAACCATTCAGTGCAATTATTGCACTCGTTACTTCccaaacaaaacaacaagAGATTCTCATCACAGAGCCATTCATCGAGATCAACAAGTCAATACAGGCTTTTTCAAGTGTCCAGATTGTCCTGTTGGATTTGAGATGAGAGAGGAACTAAGAATTCACAGCTTCACTCACTTTGAAGGGGAAATTCATACTTGTCTCGATTGTGGTCAGATCTTCAAGCTGAAGAAACTTCTAACGAATCATGCGAAGAAACACGATTCTGCTCAATTTGTTTGCCCAATTTGCCGTAAACCATTCAAATATCGGTCTAACCTTGGAAAGCACTTGAGAGGAAGATGTAAGGGACCGTCtgaagcaaagaaagaaactgatCCTTCAGCTGAAGAACAAGCTGAAATAGCGAAAAAACAATTGATCGACATGACTTTTATTCAATCGAAAGTAGCATTCAAACCTGATACCACAAGCAAAAGATCTGTGAAAGAAGTTAACAACACAGTAGAGCATAAAAGTGAATCTCAAGAGGCAATAGCAAACGTTGATGTTGTTGGGAAaccttcaattaaattacaaagtCTTGGACGCCGCCTAAAGCAACAAATTCAGACGACTTCGAATTCACCGATTAcctcaaatttgttttacaaCTGCGACTTGTGTGACTTCCAAGATCTCAAAAAGTCTCAAATCCTCTCTCACATTCGTCATCATATTTCTTCGCAACGTCACAAATGCAAAACATGtttagaaactttctcgacaaaaatgaaacttcaaaatcaCTCAATGAAAACTCATGGTCGTGGAGTTATTGGATCTCCTGAATATAGCAAAGCTATGGAGTGTCCGAGCTGCAAACGAGTATTCAGCGaagaaagattgaaattcCACATGAAACTCCATGAAAGCATCAACTTCACTTGCGATCAATGTTCAAAGATGTTCCGGAGTCTGTTGGCATTGGAAAACCATATCGAAAAGAGTCACTCAACAGAAAAGAGATTTACTTGTTCGACGTGCggcaaaagctttaaaaagaTGACGATCCTTAAACATCACGAAGAAATTCATAATCCGATTAAGATTTACGTTCAATGTGAAATTTGCAATACAATGATGCAAGTGAAGAGTCTGAAGCTTCACATGGCAGTTCAACATGAAGGTCGCTACGAGAGAAAACATATTTGCGAGTGTGGAAAATCGTTTCGTTACGAGAAACAGTTGGAGAAACATTATAAAGCAGTTCATGAGAAAGTTAACAGAGGCATCATTTATCCTTGTAACGATTGCTCAAAAGTCTTCAATCGTCGATCGGAACTGAGACTTCATTCGTTTGAACACTACaagggaaaattatttgaatgcGAATGtggaatgaaattcaaaacgaagaaacttCTGACTTATCACTCTGCTGTGCACAAAGATAATCAATTGCCTTGTGAGCACTGCACACTCGTTTTCAAGACCCGAGGAGGACGAAGGAAACATTTAGCGAAGGTTCACGGaaaggaatttattgaaatacCAACGTTTGAACAGAGTAGCGAAAATTAG
- Protein Sequence
- MAFKANQSEKLSKRKKKSKASRSTEFYCEICSKQLSSFSNFIRHNVKHQPKNYICDYEGRNFNTKDKLRLHILQHRIHYRVQCKVCLKSYTTNQSMRKHLRTHFEHHQCDQCGQTFKHKLLLLNHVSSIHVDEQTIQCNYCTRYFPNKTTRDSHHRAIHRDQQVNTGFFKCPDCPVGFEMREELRIHSFTHFEGEIHTCLDCGQIFKLKKLLTNHAKKHDSAQFVCPICRKPFKYRSNLGKHLRGRCKGPSEAKKETDPSAEEQAEIAKKQLIDMTFIQSKVAFKPDTTSKRSVKEVNNTVEHKSESQEAIANVDVVGKPSIKLQSLGRRLKQQIQTTSNSPITSNLFYNCDLCDFQDLKKSQILSHIRHHISSQRHKCKTCLETFSTKMKLQNHSMKTHGRGVIGSPEYSKAMECPSCKRVFSEERLKFHMKLHESINFTCDQCSKMFRSLLALENHIEKSHSTEKRFTCSTCGKSFKKMTILKHHEEIHNPIKIYVQCEICNTMMQVKSLKLHMAVQHEGRYERKHICECGKSFRYEKQLEKHYKAVHEKVNRGIIYPCNDCSKVFNRRSELRLHSFEHYKGKLFECECGMKFKTKKLLTYHSAVHKDNQLPCEHCTLVFKTRGGRRKHLAKVHGKEFIEIPTFEQSSEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -