Sate012481.1
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- -
- Assembly
- GCA_033063855.1
- Location
- CP093831.1:15559392-15562501[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0013 0.055 13.9 0.8 1 23 170 193 170 193 0.98 2 14 0.004 0.17 12.4 6.0 1 23 199 221 199 221 0.98 3 14 0.12 5.2 7.7 2.4 1 23 226 249 226 249 0.91 4 14 2e-05 0.00082 19.7 1.8 1 23 255 277 255 277 0.96 5 14 0.0015 0.061 13.8 0.4 2 23 284 305 283 305 0.97 6 14 0.015 0.63 10.6 3.5 1 23 311 334 311 334 0.96 7 14 0.0037 0.15 12.5 0.2 2 23 348 370 347 370 0.95 8 14 3.1e-06 0.00013 22.2 1.6 1 23 560 582 560 582 0.98 9 14 1.2e-06 5e-05 23.5 1.7 2 23 589 610 588 610 0.97 10 14 0.00028 0.011 16.1 0.9 2 23 616 638 615 638 0.93 11 14 0.00011 0.0046 17.3 1.2 1 23 644 666 644 666 0.97 12 14 0.00013 0.0055 17.1 0.2 2 23 676 697 675 697 0.97 13 14 0.01 0.42 11.1 1.8 1 23 703 726 703 726 0.96 14 14 0.0076 0.31 11.5 0.5 3 23 738 759 737 759 0.94
Sequence Information
- Coding Sequence
- ATGGAGAAATTCGAGATCAAAGATGTTGAAAACTGCATTGTTTGTCAACAGTACATGGGCCCattcaaaaatgaattgagtGTAGTTACTGGATATTCAGAGAAACCAGTTTTACAGCTACTtgAGCTATTTCTTGATATACAAATATCTTCACAACATCTTGAACAAGCTGGGATCTGTCAAAACTGCTTTATAAAATTCAACGAATACGATGAACACCAAACTTTGGCAGACACAATTCAAAATGAGTTAGTCGAACTTTACAGAGCAAATGTAGTTGCAGTTAAGGAAGAAGAGTTCACATTTGAAGAGgttgaagttgttgatgttgcCAGTGTATGGAAGGAGGAGCCGCCAATGAGTTTGTTTATTGAGTCAAATGACAGACCTGAAATGATTATTGCGGAAATTGTCGATCATCAGAAATCGCGACCGAGAAAACCGAACTACACAAAAGTCGATAAGGATGCTGGATTGATTGTTGTCATGTGTGAAGGAAAGAAGCAATATCAATGTGATATCTGCGGCATGACCAAGTTTCCATCTCGATCGCGTCTTAAGAGTCATCGTCAAATTCATACTTCTGAAAGGAACTTTATGTGTCAGatTTGTGGTTCAAGCTTTAAAACAATGAATTGTCTGAAGAATCATCACAGACTCCACAATAATGTCTTCTACTTTTGCGATCTTTGCccaatcaaatttaaaGGGAAGCACGAGTTACGCTGTCATATGGATgcaattcatttgaaaaagaagGATCACATTTGCCAGatTTGTGGAAAAGCATTTAGCCGAGATAAAACTCTTCGTCAACATCTGATGTATCACATtaacgaaagaaatattgtttgCGAAGTTTGCGGATTTAAAACTGTAAACCGGCCTAAAATGACACGGCATATGAAGTCCCACACGAAAGAGCGAAATTATCCTTGCTATATTTGTCATAAACGCTTCTTGTACAGCTATAACGTTACTGCTCATATAAAACACGTCCATTTCCACGAGAAACGACCAACGACTagcgaagaaaaacttatttgCACCATCTGTGGAAAGaaattccAAAAGATTTGGAAAGTGAAAGATCACATGGCAACTGTTCACAAAGTTGTTGAGGCCACAGAGGAGCAAATCACGGAGAACTGCTTTATTTGCCGTGAGATAATGGGCGCCTTTAGGAATGATCTCACGGTTGTCACAGGATATTCGGAGAAAACGCTATATCAGCTCATTGAGGACTTCACAAAGATCAGCTTCAATGATGAAATCTTGCAGGAGGCTGGGATTTGtcaaaattgctttattaAGTTCAATGAATACGACCAATATAGAGTGATGGCCGAGAAGATccagaaagaaattgttgttaTATTTGAGTCGACTAGTGATGCGTTGCAATGTGAAGATGAtatgaaacaagaaatggaaattactGAAAGCCCCGTTTATGAGTCTTATCAAGAAGCAACAATGGAAGAACTCTTTGAACTCGATCATGAAAACGACAGCACAAACACTGAAATGATCGTCTATGATTGGCCCAGCAACGTCAAGCATGACAACCAAAAATACACTAAGATCGATCCATCGGAACAGAAACCAATTCGCCAGCGGTTTAAGAAGCCATCTGATGAAAACATCTCTGCAATATTTTTGGATAATCAGAAACTGTTTCAGTGCGAAATATGTGATAGAACATTCAAAGAGAAGAGCAAATTGAAGTCGCATCGTGAGATTCATACAACGGAACGCAATGTCGTTTGTCCTGAATGCGGTAAAAGATTCAAAACCCAAGCATGCCTTAGGTCTCACAAAAGAGTACACAATCCAGTTTTTCTGCACTGCGATCTCTGTGGAAAATCGTACACTCAGAAGCCGGAGATGGTGAAACACATAAAGTTCGTTCATCTCAACATTCGCGAGTTTTTCTGTCAGATTTGCGGTTCGGGATTCGGATCTAAAGGTCATTTATCAACTCACATGCTCACACATTCAACAGATCAGTCAGCAAAAACTATCAGATGTGCGATTTGCGAAGCCGCATTCTATACGAAAGCAAAACTTGATCGACATATGAAGACTCatacaaaagaaagaaactatGAGTGTTCGATTTGTTCGAAGAGATTCCTGTACAGCTACAACGTAACCGCACATGTCAAGCATGTCCACAATGGTGAgaagcgaaaggaaaacgatAAATTCTGCTCCTTTTGTGGAAAGAAATTCCAAAAGGTCTGGGCATTGCAGGATCATATGGCTCAATATCATCAAGTCGTCGAAGCTTTGGTAGAAGAAGATGTTCTTTACGAAGCTGATTAG
- Protein Sequence
- MEKFEIKDVENCIVCQQYMGPFKNELSVVTGYSEKPVLQLLELFLDIQISSQHLEQAGICQNCFIKFNEYDEHQTLADTIQNELVELYRANVVAVKEEEFTFEEVEVVDVASVWKEEPPMSLFIESNDRPEMIIAEIVDHQKSRPRKPNYTKVDKDAGLIVVMCEGKKQYQCDICGMTKFPSRSRLKSHRQIHTSERNFMCQICGSSFKTMNCLKNHHRLHNNVFYFCDLCPIKFKGKHELRCHMDAIHLKKKDHICQICGKAFSRDKTLRQHLMYHINERNIVCEVCGFKTVNRPKMTRHMKSHTKERNYPCYICHKRFLYSYNVTAHIKHVHFHEKRPTTSEEKLICTICGKKFQKIWKVKDHMATVHKVVEATEEQITENCFICREIMGAFRNDLTVVTGYSEKTLYQLIEDFTKISFNDEILQEAGICQNCFIKFNEYDQYRVMAEKIQKEIVVIFESTSDALQCEDDMKQEMEITESPVYESYQEATMEELFELDHENDSTNTEMIVYDWPSNVKHDNQKYTKIDPSEQKPIRQRFKKPSDENISAIFLDNQKLFQCEICDRTFKEKSKLKSHREIHTTERNVVCPECGKRFKTQACLRSHKRVHNPVFLHCDLCGKSYTQKPEMVKHIKFVHLNIREFFCQICGSGFGSKGHLSTHMLTHSTDQSAKTIRCAICEAAFYTKAKLDRHMKTHTKERNYECSICSKRFLYSYNVTAHVKHVHNGEKRKENDKFCSFCGKKFQKVWALQDHMAQYHQVVEALVEEDVLYEAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -