Sate005378.1
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- -
- Assembly
- GCA_033063855.1
- Location
- CP093830.1:2208985-2211528[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 9 3.7e+02 1.9 0.7 8 23 99 114 87 114 0.74 2 19 0.094 3.9 8.1 1.6 2 23 122 144 121 144 0.92 3 19 1.5e-07 6.4e-06 26.3 3.3 1 23 149 171 149 171 0.98 4 19 0.012 0.51 10.9 1.6 2 23 178 199 177 199 0.95 5 19 0.001 0.041 14.3 1.1 1 23 203 226 203 226 0.92 6 19 0.048 2 9.0 0.6 2 23 233 255 232 255 0.93 7 19 0.00061 0.025 15.0 1.1 1 23 264 287 264 287 0.94 8 19 2.4e-05 0.001 19.4 2.8 1 23 293 315 293 315 0.97 9 19 0.089 3.7 8.2 0.4 2 21 321 340 320 341 0.93 10 19 0.00023 0.0094 16.3 0.4 1 23 493 515 493 515 0.98 11 19 0.008 0.33 11.5 2.9 1 22 521 542 521 544 0.88 12 19 0.094 3.9 8.1 1.4 1 23 555 577 555 577 0.97 13 19 0.016 0.68 10.5 0.4 2 23 584 606 583 606 0.97 14 19 0.00016 0.0068 16.8 2.1 1 23 612 637 612 637 0.96 15 19 5.9 2.4e+02 2.4 0.0 2 23 645 666 644 666 0.78 16 19 0.016 0.65 10.5 0.2 1 23 675 698 675 698 0.92 17 19 0.0015 0.061 13.8 1.0 1 23 707 729 707 729 0.92 18 19 0.0046 0.19 12.2 1.2 1 23 735 757 735 757 0.97 19 19 0.0017 0.069 13.6 0.2 1 22 762 783 762 783 0.95
Sequence Information
- Coding Sequence
- atgtctttgaATGATGAAAGATACTCGCTTAAAGTGGAAATTGTTAATTCGGATGAGGAGCAGTTTGAACTTGTGGaggatttgattgaattcgCACCAGAAGAAGTGGAGTTCGAGCAATATGAGTTTATCGAAATTAAGGAAGAATTGACAGGAGAAAAACCGAAGGCTTTCGTCGATGGAAATGAACTATCTCAAGAAGATAAGTGTTTTATGATCAAAATCGAATCCGATGAGTTTATTAGCAAAGATCGGATCTTCAAGTGCAGCaacagaaattgttttctcgcaaagattttctttgaaactcAACAGGAACTACAGCAACATAATCTAATCCACTTACAGCAGCTTCAGTCAAATCAATGTCCGATTTGCAGCAAGATACTTTCCAACAGAAAAAACTGCAACACTCACATAGAAGCTCGTCACAATCCCAAACGATATCAGTGCGATAATTGCGGAAAATCATTTAGAAGCAAAGATAATTTAAGACTTCATATGAGCCATCATCGGAAGTACTTCATGGTCGAGTGTCGAGCTTGTAAGAAAACTTACAAAAGTATGCAATCGCTACGGTATCACCTTCGCCAACATTTCGAGCATCATCAATGTGAAACTTGTGGGACAGTCTTTGAacacaaaaagcttttgttggGACACATCGCAGCAAAGCACAATCATGATCTGATGATACAGTGTCGTTTCTGCACGAGAATGTTTTCACGAAAGGATGTACGCGAAGCTCACGAACGagaaattcataaaaacGGACTGATTGGATCTCACTTTAAGTGTCATGAGTGTGATTTCGCTTTTGATCTTCGAGACGACTTGATGAATCACAGAATCCTCTCGCATTACTCTGGTGTCGTTCATACATGTGATGACTGCGGAAAGATCTTCAGGAAGAAGAGCTTGCTTGATCAACACAAGAATAGTCATAGAGAAAAGTCGATTCAATGTGACAGTTGCAAAATGATGTTCACATTCATCACAGCATTGAGAAAGCATAAAAAGCTCGGTCGATGCAAAGGCCCAGCAtctgaaaatcaaaaagattctttgacaaaagaagaaatcgcgAGGATAGCAAAGCAACAGCTTCAAGAGATCACCGTGAATCCAATTAAGAAACCTGAGCCAATTGATCTCTTTCATGATCTTgctaaagaagaagaagaagctagCGAAGTGGTGagaatcaagaagaaacCGGGTCGGAAAAAGAAGGAATTATTCGAGTatgaagagattgaagaagaacaagCAGGATCGAGCGTTGAAAGacgtccaacaaaaaaatctgcAATCACAATCAAGACAATTACTGAACCAGAACTTGACTTTTATCGGCAAAAAGCTGATTCAGAGATAACTTTTAGCTCAAGCGGACGAGcaatcaaaaggaaatttccgCAATATCTTCCAGGACGTCTCAAGATGGTCAATATTCCCAAAAAATCAAACATTCCCTTTGAATGCGATAAATGTGGCAAGTCATTGGACAGTAAAGTAAGGCTGATTTCTCATCTCAACAGCCACGTTCGAATTCAAAAGCACAAATGCGAAATTTGCTCTAGAACTTTCATGAACTTGGCGGGTCTTAAGAAGCATTGCATGATCACACACCGTGAGGAGAATCccttcaaacaaaagaagtttcGATGTGAAAGATGTCCAAAGAGTTATCTCACTGAATTTCTGTTATCTCAGCACAAactttctcatgaaaatcgAAAGGATCAGAAATGTGATCAATGCTCCTTTGCAACGAATGCTCCTTACGACTTGAAAAATCATATCAAACGAATTCACAAGGCAACTAAGGATTTCTTTTGTCCTGAAGAAAACTGTGGCAAAGCGTTTAAACGACGATGCGACATGGAAAATCATCGTAAAACAGTTCACACGGATGTTAAGGTTTATGTGAAATGTCCAATTTGCGATGTAATCGTGTTGGAGAAAGGACTTCAAAGTCACATTATCAATCGACATTCAGAAaaggcaaaagaaaaaccttttgttTGCCAAGTCTGCGGAAGAGCTGAGCGTTATGAGAAGAATCTTCAACGACATTACGAAGCTGTTCATGAACCCGCTGATCGAGGAGTGATTTATTCTTGTCCATCGTGtccacaaacatttttccgaCGACGAGAGTTGACAGCTCACTcatttgaacatttttctggAATCATCTACGAGTGTCAAATATGTGCCAACAAATATAAATCGAAAAAGGAGTTGACGAATCATGTTTATTCGCACAAATGCAAAGAATTTCCATGTCCCATGTGCAACGTTGTATTTCAAACGAAGTCTGGTCGAGCCAAGCACATgaagaaatataattttcttacGGACGTAAAAAGTCAAGAAACTGAAAGTGATAATGATCTTAAAGGAGATTATgtcaaattttcataa
- Protein Sequence
- MSLNDERYSLKVEIVNSDEEQFELVEDLIEFAPEEVEFEQYEFIEIKEELTGEKPKAFVDGNELSQEDKCFMIKIESDEFISKDRIFKCSNRNCFLAKIFFETQQELQQHNLIHLQQLQSNQCPICSKILSNRKNCNTHIEARHNPKRYQCDNCGKSFRSKDNLRLHMSHHRKYFMVECRACKKTYKSMQSLRYHLRQHFEHHQCETCGTVFEHKKLLLGHIAAKHNHDLMIQCRFCTRMFSRKDVREAHEREIHKNGLIGSHFKCHECDFAFDLRDDLMNHRILSHYSGVVHTCDDCGKIFRKKSLLDQHKNSHREKSIQCDSCKMMFTFITALRKHKKLGRCKGPASENQKDSLTKEEIARIAKQQLQEITVNPIKKPEPIDLFHDLAKEEEEASEVVRIKKKPGRKKKELFEYEEIEEEQAGSSVERRPTKKSAITIKTITEPELDFYRQKADSEITFSSSGRAIKRKFPQYLPGRLKMVNIPKKSNIPFECDKCGKSLDSKVRLISHLNSHVRIQKHKCEICSRTFMNLAGLKKHCMITHREENPFKQKKFRCERCPKSYLTEFLLSQHKLSHENRKDQKCDQCSFATNAPYDLKNHIKRIHKATKDFFCPEENCGKAFKRRCDMENHRKTVHTDVKVYVKCPICDVIVLEKGLQSHIINRHSEKAKEKPFVCQVCGRAERYEKNLQRHYEAVHEPADRGVIYSCPSCPQTFFRRRELTAHSFEHFSGIIYECQICANKYKSKKELTNHVYSHKCKEFPCPMCNVVFQTKSGRAKHMKKYNFLTDVKSQETESDNDLKGDYVKFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -