Sate002033.1
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- -
- Assembly
- GCA_033063855.1
- Location
- CP093829.1:10059144-10061101[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00026 0.011 16.2 0.4 2 23 11 33 10 33 0.94 2 14 0.00023 0.0097 16.3 1.5 1 23 39 62 39 62 0.93 3 14 0.00041 0.017 15.5 6.4 1 23 68 90 68 90 0.98 4 14 0.00061 0.025 15.0 2.8 1 23 96 119 96 119 0.96 5 14 0.14 5.9 7.5 0.1 1 21 135 155 135 156 0.93 6 14 4.8e-06 0.0002 21.6 3.8 1 23 181 203 181 203 0.97 7 14 9.3e-06 0.00039 20.7 1.5 2 23 356 378 355 378 0.96 8 14 0.00083 0.034 14.6 1.0 1 23 385 407 385 407 0.98 9 14 0.0012 0.048 14.1 0.5 1 23 413 437 413 437 0.96 10 14 0.18 7.4 7.2 8.5 1 23 447 469 447 469 0.99 11 14 0.0001 0.0043 17.4 1.1 1 23 475 498 475 498 0.96 12 14 0.0013 0.055 13.9 4.3 1 23 504 526 504 526 0.96 13 14 4.5e-07 1.9e-05 24.8 1.5 2 23 536 557 535 557 0.97 14 14 0.11 4.4 7.9 1.3 5 19 565 579 562 581 0.93
Sequence Information
- Coding Sequence
- atggaaacttttgtCTATGATACTCGTTCAATGTGTGATCAGTGCGGAAAAGGATTCTCGAATATTTACACTCTATCCGCACACAAGAAACAAGTTCATGAAGGGATCAAGTCCTTTTCCTGTAATATCTGTGAAGCCATGTTTGCTACAAAACATAAGTTGCAGAGACATTTCCAAGGAGTCCATCAAGAAAGACGGGATTTCCACTGCGTTACTTGTAGTCACTCGTTTAAAACAAGAGACATGCTCGTGAAGCATCAAAGAACTCACTTTGATAAAGGACCATTCAAATGCCAGTTGTGCGACGAAATCTTTAAGTTCAAAAGTGGTCTCGACcatcatttaaaattgaagcacactgcaaaagaagaaagcgaaacgaaaataaccacaacaatattttatgaatgCGATCTCTGTCAGAAGCTTCTAAAGTCAATGAAACAGCTTGATCGACATGTAGCGACTTGCAAATTAAGAAGCTTTGGAGATCAGGAGCAACATGAATCGTCATCTGTAAGGACTCTAAgggaaagtttcttcagcTGCTCTTATTGTCATAAAACTTATAAATCGAAAAGCAACTTTGAAATCCACATTGCCTCGCATGAGAATGTTGATGAAATGAGAGATTACGAATATGTCATTAGTCCCAtaattgaagaagtttatgatgacgatgatgaagataTGAATGAAGTGATAACTAATGATCCTGAAGAATTgcttaagaaaattgatgaagatgTCGTCTCAATCGAAAGAATAGAAACAAAACGACTAATCAAAGAACCTGTTTTGGAAACGAACGAATGCATCGAAATTGATGAGGAAGCGAGcttagaaaatatttctgccGAGTCAGTTACTGTAGACGATTATTCAGACGATGTCAAAGTTGAGGATTATTTGATAGAAGAAGGATTAGATTTTTATGAGACAATTATTGCTGAGGAATTCGAGACGTCGCTGTCAGAAGTCAATAAAggcgaagaaatttatgtcgATGAGAACATATCAAAAGAAGAACACAACGAGAAATCTCcggaaaagaagaatcagAGTGTTTGTGACGAATGTGGAGCAGTCTTTAAGAACAATAGTCATATGAAAAGACATGTTCAACGGAAGCACCGAAAGGAGTGTTACAAATATCAATGTGACATCTGCGACTCAAAGTTTTTACTAAACTATGATTTAAAACGACACATGATTAAACACAGCAAAGCTCGCAACTACCAATGTGAGCTTTGCGAAGATAAAGTATTTAAAACTGAGCTTTCATTGAGAAATCACATGAAACTACTTCACGACCCGAATAAGActcttgaaaagaaattcaagtgCAATTTTTGTGATAGAAGTTATCTTCATCAACGACACTTGGATTATCACTACAGAAAACATACAGGTGACCAGCGTTATCGATGCGACGATTGTGACAAGTCATTCTTCTACTCTGACGCTGTGAAATGGCATAAGATTAgaTTCCATGGCGAGGCTGCTCCTTTCAATTGCGGAATTTGtcacaaaaaatttattcacgagAAAAGTCTTCAATCTCACGAGAAAGATCATCAAGCTGGATCAGGATCCCTTGCTGTTGAGTGTAAAATTTGTGGAAAGTCAGTTTCTGAAAAACGTCATCTTCAGAGACACATGCGAATTCAcgctgataagaaatttcaatgcaAATGTGGCGAATCATTCAAAGAACGACATCAGCTTGCAAAGCATTCaacaaattgcaaaataGCAGCAGATGAGGACAATACGAGCTGA
- Protein Sequence
- METFVYDTRSMCDQCGKGFSNIYTLSAHKKQVHEGIKSFSCNICEAMFATKHKLQRHFQGVHQERRDFHCVTCSHSFKTRDMLVKHQRTHFDKGPFKCQLCDEIFKFKSGLDHHLKLKHTAKEESETKITTTIFYECDLCQKLLKSMKQLDRHVATCKLRSFGDQEQHESSSVRTLRESFFSCSYCHKTYKSKSNFEIHIASHENVDEMRDYEYVISPIIEEVYDDDDEDMNEVITNDPEELLKKIDEDVVSIERIETKRLIKEPVLETNECIEIDEEASLENISAESVTVDDYSDDVKVEDYLIEEGLDFYETIIAEEFETSLSEVNKGEEIYVDENISKEEHNEKSPEKKNQSVCDECGAVFKNNSHMKRHVQRKHRKECYKYQCDICDSKFLLNYDLKRHMIKHSKARNYQCELCEDKVFKTELSLRNHMKLLHDPNKTLEKKFKCNFCDRSYLHQRHLDYHYRKHTGDQRYRCDDCDKSFFYSDAVKWHKIRFHGEAAPFNCGICHKKFIHEKSLQSHEKDHQAGSGSLAVECKICGKSVSEKRHLQRHMRIHADKKFQCKCGESFKERHQLAKHSTNCKIAADEDNTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -