Basic Information

Insect: Smittia aterrima
Gene Symbol: -
Assembly: GCA_033063855.1
Location: CP093829.1:18380697-18384007[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2e-05 0.00082 19.7 0.8 1 23 168 190 168 190 0.97

2 15 0.004 0.17 12.4 3.3 1 23 196 218 196 218 0.97

3 15 2.4e-05 0.001 19.4 0.7 1 23 342 364 342 364 0.98

4 15 0.003 0.13 12.8 0.1 1 23 371 394 371 394 0.93

5 15 7.2e-06 0.0003 21.0 0.6 3 23 453 473 452 473 0.98

6 15 0.13 5.5 7.6 0.0 3 23 495 515 495 515 0.93

7 15 1.2 50 4.6 0.5 1 23 521 544 521 544 0.92

8 15 0.034 1.4 9.5 1.8 2 19 552 569 551 570 0.95

9 15 8.8e-05 0.0036 17.6 5.1 1 23 579 601 579 601 0.97

10 15 0.015 0.63 10.6 1.0 2 23 607 628 606 628 0.96

11 15 3.7e-06 0.00015 22.0 1.0 1 23 634 656 634 656 0.98

12 15 0.0061 0.25 11.8 0.2 3 23 664 684 662 684 0.97

13 15 0.00072 0.03 14.7 2.2 1 23 690 712 690 713 0.95

14 15 0.68 28 5.4 0.1 1 23 727 749 727 749 0.96

15 15 0.00055 0.023 15.1 0.1 3 23 1023 1043 1022 1043 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2e-05	0.00082	19.7	0.8	1	23	168	190	168	190	0.97
2	15	0.004	0.17	12.4	3.3	1	23	196	218	196	218	0.97
3	15	2.4e-05	0.001	19.4	0.7	1	23	342	364	342	364	0.98
4	15	0.003	0.13	12.8	0.1	1	23	371	394	371	394	0.93
5	15	7.2e-06	0.0003	21.0	0.6	3	23	453	473	452	473	0.98
6	15	0.13	5.5	7.6	0.0	3	23	495	515	495	515	0.93
7	15	1.2	50	4.6	0.5	1	23	521	544	521	544	0.92
8	15	0.034	1.4	9.5	1.8	2	19	552	569	551	570	0.95
9	15	8.8e-05	0.0036	17.6	5.1	1	23	579	601	579	601	0.97
10	15	0.015	0.63	10.6	1.0	2	23	607	628	606	628	0.96
11	15	3.7e-06	0.00015	22.0	1.0	1	23	634	656	634	656	0.98
12	15	0.0061	0.25	11.8	0.2	3	23	664	684	662	684	0.97
13	15	0.00072	0.03	14.7	2.2	1	23	690	712	690	713	0.95
14	15	0.68	28	5.4	0.1	1	23	727	749	727	749	0.96
15	15	0.00055	0.023	15.1	0.1	3	23	1023	1043	1022	1043	0.98

Sequence Information

Coding Sequence: ATGGATCATCATAATTTTATCCTGTGGCAACAGGACGAAGACACAAATTATGATGAGATAATAGAGAACGATGAACTTGAGGATCTCAACGATATGATAGAAGAACAAGTCGAAGGGTATGAGGAGGTCAACATGTTAGATGACAACTCAGAGACTGACGAAGGCTATTACATCGATGGCGAGATGATTTCTAATCctcaagaaaatctcatcTATCTCGATGACAATTTAGTCAATGGAAGTTCTCAGATAGGAGTCGGGATGAGTCATTTAATAGAGCAACGAGTTCAAGAGgcggaaaataaaattattggTGATCAAGATGACCAGCAATATTCGACAACTGTCGAAGAAGTTATCACTCAAGATTGGCCACTTGAAGGAGAAGACATGGTTCAAGTTGCAATGGAACAAGTCGTTACATCCGATAACTTTCAAGAAGACGATATCGAAACTGTGCCACTTCATACCGATCAAGATGAGTACACAACATCTCGGCCATATCCTTGTGATTTCTGTAGTCGACGCTTCCGAAAGAAAGCAAATCTAATGAATCACATGATAGCCCATCAAAACGTTCGTCCACATATGTGCAATCTTTGTGGATCGAGATATGTTAGAAAATGTGATCTTATCAATCACTTGAAAATTCACGCTTACAATATCGAAGACGAGTCGTCATTGACAGCAGGTTCAAGCACGGGAGGCAAAACGAAACCACCGAAGTTTGGCGAACTCGATTATTTCAaCGATACATACGACGACATACCAGAAGAAGATGATTTCGATTATAATCATTATTCAAAACCAACGACGTCATCTGCTCCAAGTCGAGCAGTCAAGGCTTCCGCTAAAAAGAAGCCAGCAAAGAAAACTCCAGCACCAAAGTTTGAGAAGCTGGTCAAAGATAAAACGATGCCGAAAGATCTCAATATTACAATAAACGAGAGAGACGATGATGACGAGCCGTCGCATATGAATAAGTTCATAGAGAGATTCCCAATCACTGATCCTCGAAAGCCATTTGTTTGCCAGCATTGCGGAGTTGCTTTCACGAGAGAAAAGGCGCTTGAATCACATACAAAGATTCATGCCAATCAAGAGCCAACATTTGATTGCGAAGTCTGTGGAGATTCGTTTTTTGACAATTCATCTTTGGAAGAGCATCTTGAGCTTCGTCACGATTACTCAGCCAGAATAAGAAGAACTGGCGGGAAATCGACTTCAGGAAAAACCACTCCGCGATCAAAAGTAATGGAAACAATGGACTACGACGACAGCAATTCTGAATATGAACCTGATAAGAACAATGAGGATGCagatgatgacgacgatgaagaagatgcCGGAAACTTCTGCGATAAATGCCCGCTATCGTTTAAATCCGCAGAAGCTTTGAAGCGCCACATTAAGACTCACATAAAATCGGAAATACTTTCTGACGATGATCCACCGATAGCAGCTGATGGAACTTCATTGGGTTGTAATGTTTGTGGAGAAAGCTTTAAGGAAGCTCTCGATGTTCTTGCGCACGCTGAAATTCACGCACGTTTCCAACCATTCAAGTGTCAGTTGTGTGGTGACACTTTCTTTGAAGAGAATAAAATCAAGATTCACTTGATGGAGAATCATCAAGATGAACTCACAGAATCATCCTGTCGATTGTGTGGAAAGCAATGTCGCGATCAACGATCTCTCATCAAGCATTCGTGGGAGCATTCGCGAGAGAAGAATCATCCTTGCTCGAAGTGTGGTAAAACTTTCCATAACAAAGCGAGATTGAAGCGACACATCTCATCACATCGCAACAAAAGTGTAGTTTGTGAAGTTTGTCATGAAGAGTTTCCTGATGGCCGCCAGCTCATGAATCATCGACACTCGCATACAAAAGCAAACCAGTTTCCATGTCATGAGTGTGGAAAGACTTTTGGATCGAGAAGTTCTCAACAGATTCATATTAGAATTCATACTGGAGAAAAACCGTATGGCTGTCGTTTCTGTTGGAAAGCCTTTGCTGATGGTGGGACCTTACGAAAGCATGAAAGAATCCACACTGGTGAGAAACCGTATTGCTGCCTTGTATGTCCTCGTGCCTTCAATCAACGAGTCGTTCTTCGAGAACACATTCGGTCACATCACTCAGCTCCTGACCCTGCTAATGGTACAACACTTACGCCTTATTACTGCTCGCTTTGCGGCGATCTCTTCCCAGTATCGTTGGATCTCATTCACCACTTGATCGAACACAGCGATCGAAGTACAGCAGCAAAGCGTGTACAACCAACTGGACCTCGAAAGTACAAGAGAAGGCGTAAGCTCAACGGTGATAGTGACAACAGTGATTTTGTGACAGGTGAAACGAATACTCAGCGTGGTCAGAAGACGGTTAAACAAGAACCCGTAGCATTCATAACAAAGAGGAACGTTCTGGCACCAGCATTCCCAGTTCCTGAAGATGCCAGTGATTTTAAGCTTCCCGATGAGATCTTTCAAGCAGTCGGAAAGCGAGTTCCAGTtattgaagagaagaaagttgttTCGCGAGCTTCGACATCAAATACTCGACCGAAAATGATATACACTCAAAAAACAAAGGTTGCTGatggaaaacgaaaaacaagGACAATGATACAAAAGCAAGTGGTTCAAGCCAAGCCGAAAACGCAAGCTACTCGAATAAGTCGACAGCAAAGGAAAGATCCCTTCGAACATGATGAGTCAAGTGAAACTTGGTCGAACGATGATCCCAACGAAGACACTTTAGACACGCTGATGAAACGAGAGCGTAAATTGTCAGAAAAATTCACTATCGATCTAGTAAATGATTTACAAGATATTTTAAGATCACCTCTAAAGATCAATGACGATAAGAATGCTTCAAACGGCGAAGATGACGATCATTTGGATACGAGTGCAAGGAGATCACGTCGTCAAATAATGTCACGTTATGGAACCTCAACATTTAAAAAGCTCGGCAAGCGAAGCAGGGAAGATTCATCATCAGAGGATGAAGAGTTGGAGCAAATCGTAATTAAACAAGAAGTTGTTTTCGACGAAGGACTTTTATGTGGGATCTGTGGCGACTCTTTTTCTTCCAAGACAGATCTTCGTGATCATATATCAATTCACATTTAA
Protein Sequence: MDHHNFILWQQDEDTNYDEIIENDELEDLNDMIEEQVEGYEEVNMLDDNSETDEGYYIDGEMISNPQENLIYLDDNLVNGSSQIGVGMSHLIEQRVQEAENKIIGDQDDQQYSTTVEEVITQDWPLEGEDMVQVAMEQVVTSDNFQEDDIETVPLHTDQDEYTTSRPYPCDFCSRRFRKKANLMNHMIAHQNVRPHMCNLCGSRYVRKCDLINHLKIHAYNIEDESSLTAGSSTGGKTKPPKFGELDYFNDTYDDIPEEDDFDYNHYSKPTTSSAPSRAVKASAKKKPAKKTPAPKFEKLVKDKTMPKDLNITINERDDDDEPSHMNKFIERFPITDPRKPFVCQHCGVAFTREKALESHTKIHANQEPTFDCEVCGDSFFDNSSLEEHLELRHDYSARIRRTGGKSTSGKTTPRSKVMETMDYDDSNSEYEPDKNNEDADDDDDEEDAGNFCDKCPLSFKSAEALKRHIKTHIKSEILSDDDPPIAADGTSLGCNVCGESFKEALDVLAHAEIHARFQPFKCQLCGDTFFEENKIKIHLMENHQDELTESSCRLCGKQCRDQRSLIKHSWEHSREKNHPCSKCGKTFHNKARLKRHISSHRNKSVVCEVCHEEFPDGRQLMNHRHSHTKANQFPCHECGKTFGSRSSQQIHIRIHTGEKPYGCRFCWKAFADGGTLRKHERIHTGEKPYCCLVCPRAFNQRVVLREHIRSHHSAPDPANGTTLTPYYCSLCGDLFPVSLDLIHHLIEHSDRSTAAKRVQPTGPRKYKRRRKLNGDSDNSDFVTGETNTQRGQKTVKQEPVAFITKRNVLAPAFPVPEDASDFKLPDEIFQAVGKRVPVIEEKKVVSRASTSNTRPKMIYTQKTKVADGKRKTRTMIQKQVVQAKPKTQATRISRQQRKDPFEHDESSETWSNDDPNEDTLDTLMKRERKLSEKFTIDLVNDLQDILRSPLKINDDKNASNGEDDDHLDTSARRSRRQIMSRYGTSTFKKLGKRSREDSSSEDEELEQIVIKQEVVFDEGLLCGICGDSFSSKTDLRDHISIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -