Basic Information

Insect: Smittia aterrima
Gene Symbol: -
Assembly: GCA_033063855.1
Location: CP093831.1:13838930-13840848[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 3.3e-05 0.0014 19.0 10.0 1 23 215 237 215 237 0.98

2 10 4.9e-06 0.0002 21.6 1.0 2 23 243 265 242 265 0.95

3 10 3.1e-06 0.00013 22.2 1.9 1 23 271 296 271 296 0.97

4 10 3e-06 0.00012 22.3 3.3 2 23 305 326 305 326 0.98

5 10 0.0022 0.093 13.2 0.6 3 23 335 356 334 356 0.97

6 10 2e-06 8.4e-05 22.8 0.3 1 23 362 384 362 384 0.96

7 10 5.3e-05 0.0022 18.3 0.8 1 23 390 412 390 412 0.98

8 10 2e-06 8.3e-05 22.8 0.8 3 23 420 440 418 440 0.96

9 10 6.8e-07 2.8e-05 24.3 1.5 1 23 446 468 446 468 0.99

10 10 0.00025 0.01 16.2 3.6 1 23 473 496 473 496 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	3.3e-05	0.0014	19.0	10.0	1	23	215	237	215	237	0.98
2	10	4.9e-06	0.0002	21.6	1.0	2	23	243	265	242	265	0.95
3	10	3.1e-06	0.00013	22.2	1.9	1	23	271	296	271	296	0.97
4	10	3e-06	0.00012	22.3	3.3	2	23	305	326	305	326	0.98
5	10	0.0022	0.093	13.2	0.6	3	23	335	356	334	356	0.97
6	10	2e-06	8.4e-05	22.8	0.3	1	23	362	384	362	384	0.96
7	10	5.3e-05	0.0022	18.3	0.8	1	23	390	412	390	412	0.98
8	10	2e-06	8.3e-05	22.8	0.8	3	23	420	440	418	440	0.96
9	10	6.8e-07	2.8e-05	24.3	1.5	1	23	446	468	446	468	0.99
10	10	0.00025	0.01	16.2	3.6	1	23	473	496	473	496	0.98

Sequence Information

Coding Sequence: ATGGATATGGCGGTGGAAATTGACGTTTTGCCGTTAGAAAAGATCTGTAGAACATGTCTTTGCACAAGCGATGATTTGTTGGAGACACTGTTTGTTCACGATCAAGTCGAACTAAGCTTAGAACAAATGTTAACACAAACATTTGGAAAAATAATCACAATGTCAAATGAATTGCCTCACAAAATATGCGTAGACTGCCAAGACATCATCAAGAGATCCTACGAGTTTAAAATCCGAGTTCATAAGTCTACAAATATTCTAATGGGAAAAGATGCCTCGTCGAAGCACTTAGTGGATGACAAGGACACTCAAACTGATTCCCCACTGATACGAAGGTCATCAGATGCACGAAAAGACTCTCACAATGAAATACAGTTCGACGATGAGAACTTTGAAAgtataaatttaaatttggaCGAAGATCCTGAACTAAATCCACTTCTTGACAATAATTCGCAATCTGTAAAAGTTAAAAGAGAATCGTCTCTAACTGAGGACGAATACGACTCGGCTGAAAATCTCGAAGGAGACGATGAAACATCAGCACCACTAATCATCGTGAAAGCTGAGCTagatgaagttttaaattgcGACCTTAATCCATTCAATGGCGAAGAAAATGACGACATGAAGTACAAAATTCATAAATGCGATCAATGCAACAAATGTTTCTCACGAGCGACTCATCTTAAGCGACATAAGTTAACTcacgaagaaggaaaaatccAGTGCACAATTTGCGATAAGAAATTCACTCGAGTTGATCATCTCAACCTTCACATAGCAAGTAATCACTCAGACACAAAGCCTTTCCAATGTGAAGTGTCTGATTGCAAGAAAGGTTTCGTACGACAAGAACATTTGAAGAAGCATATAGAAACGAAGCATGGCGATACAACCAAAGACAAGGAAACTTGCGACCTTTGTCAAAAAACGTTCTCATCGAAGAAATATCTGCGAATGCATATGAAGACTCACGTTGGAGATGGCAAAGGTCTTTTGTGTAAATATTGTGGAAAAGAGTTCCTTGAGAAGACCGAACTAAACGACCACATGACAAAGGATCATCAGAATGAGAAACCATATCTTTGCTCAGagTGTGGACTCCGATTCGTTAGGAACGATTATCTTGTAATTCACATGAGACGACACATGGGAGTTAAGCCTTACAAATGTCGATTCTGCGAGAAAGGATTTCCACGAGCAACTGATTTAACCGTCCACGAGCGATATCACACAAACGAGAAGACTCACTTATGCAATCTTTGTGGAAAAGGTTTCCAACGAGCATACAATTTGCTTGTTCATATGAGAGTTCATACCGGTGAAAAACCTTATCAGTGTAGTTTTTGTAATAAGAGCTTCTCACAAGGGAATGACTTGAAAGCTCACATTCGACGACACACTGGTGAGCGATTCAAATGCGATCTCTGTAACGAAGGATTCATCCAAGGATATCATTTAACACATCACAAGCGTACAGTTCATGGTTTAGACGTTAAATCTCATATACGACGTGTTGAGAAGTTTGTTGCTCCTTTGACAGCTAACGAAGATGGCGATAAAGTTGAACTGGATGAAGGTGAAGAAGTCAAACTGGAAAGTGAGCCGTATGAGGTTTGTTAA
Protein Sequence: MDMAVEIDVLPLEKICRTCLCTSDDLLETLFVHDQVELSLEQMLTQTFGKIITMSNELPHKICVDCQDIIKRSYEFKIRVHKSTNILMGKDASSKHLVDDKDTQTDSPLIRRSSDARKDSHNEIQFDDENFESINLNLDEDPELNPLLDNNSQSVKVKRESSLTEDEYDSAENLEGDDETSAPLIIVKAELDEVLNCDLNPFNGEENDDMKYKIHKCDQCNKCFSRATHLKRHKLTHEEGKIQCTICDKKFTRVDHLNLHIASNHSDTKPFQCEVSDCKKGFVRQEHLKKHIETKHGDTTKDKETCDLCQKTFSSKKYLRMHMKTHVGDGKGLLCKYCGKEFLEKTELNDHMTKDHQNEKPYLCSECGLRFVRNDYLVIHMRRHMGVKPYKCRFCEKGFPRATDLTVHERYHTNEKTHLCNLCGKGFQRAYNLLVHMRVHTGEKPYQCSFCNKSFSQGNDLKAHIRRHTGERFKCDLCNEGFIQGYHLTHHKRTVHGLDVKSHIRRVEKFVAPLTANEDGDKVELDEGEEVKLESEPYEVC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -