Sate013416.1
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- -
- Assembly
- GCA_033063855.1
- Location
- CP093831.1:20724244-20727910[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0031 0.13 12.7 3.0 1 23 3 25 3 25 0.93 2 24 0.00023 0.0095 16.3 1.6 1 23 31 53 31 53 0.98 3 24 0.00099 0.041 14.3 0.3 1 23 61 84 61 84 0.95 4 24 1.2e-05 0.00052 20.3 0.2 1 20 130 149 130 151 0.94 5 24 0.074 3.1 8.4 1.9 1 23 186 209 186 209 0.97 6 24 0.0058 0.24 11.9 0.5 2 23 215 237 214 237 0.96 7 24 0.0083 0.34 11.4 0.7 1 23 252 275 252 275 0.97 8 24 0.0014 0.059 13.8 0.2 1 23 281 304 281 304 0.95 9 24 0.012 0.51 10.9 0.1 1 20 308 327 308 329 0.94 10 24 0.0048 0.2 12.2 0.2 2 23 351 373 350 373 0.95 11 24 1.6e-05 0.00068 19.9 2.6 1 23 379 401 379 401 0.99 12 24 0.00069 0.029 14.8 1.1 1 19 412 430 412 432 0.94 13 24 0.15 6.2 7.5 3.3 1 19 679 697 679 698 0.97 14 24 0.01 0.42 11.1 2.4 1 23 707 730 707 730 0.95 15 24 0.0033 0.14 12.7 0.8 2 23 751 773 751 773 0.94 16 24 0.014 0.6 10.7 0.9 1 23 779 801 779 801 0.95 17 24 1.7 70 4.2 4.2 1 23 851 874 851 874 0.91 18 24 0.32 13 6.4 0.1 3 20 884 901 883 903 0.93 19 24 0.033 1.4 9.5 2.6 1 23 911 933 911 933 0.96 20 24 0.027 1.1 9.8 0.4 1 23 943 966 943 966 0.94 21 24 0.0001 0.0043 17.4 2.0 1 23 1003 1025 1003 1025 0.96 22 24 7.7 3.2e+02 2.1 0.8 1 23 1032 1057 1032 1057 0.88 23 24 0.021 0.86 10.2 0.3 2 23 1063 1084 1062 1085 0.94 24 24 0.002 0.085 13.3 3.2 1 21 1091 1111 1091 1112 0.94
Sequence Information
- Coding Sequence
- ATGGCTCACGTCTGTACAATCTGTAGCAAGGCTTATGATCGTAAAGCTAATCTAAATTATCACTTTGCGCATCATTTCGATGAGAAACCATTCAGTTGTGAGTTCTGTAGCAATGCTTATAAGACTAAAGCTGACCTACGACAACACCAGAGGAGCCATGAGAAACAACTTGGAATGATTTTCGTTTGTGACGTTTGTCAAGCTTCTTTCGATAGCAGTACAAAGCTAAATGTTCACAAACGGGACGAACACTCAATCAGGAAATGGCGGCCTCTAATAGCTGACAGCAAGTCTGGCTATTATACGTGTGATATTGACGGCAAGACATTCCtgaatttgcataaattgaaaagacaCGTCGAAGCTGTACATCTCGAACTCAGACCATTCCCTTGTGATCTTTGCGACAAAACGTTTAAGACAGCTGCTGAACTAAAAAAGCACTACTTATGGAAATATAGACCCAAAACCAAAACCGTAAGAAGACCACGACCGGTTCCAGATGAGATCATTGATTGGGGAAAAGATGAGGAAATAGatgtaaaaataattcgTTACAAATGTTCTTCTTGCTCCGAGCTCTTCACGTCCAGGGATTTCTTGTCAGAACatgaacaaaagtttcatccGAACGCGTCTCTTGTGTGTGACTTTTGCAGCCAAAGATTTGAAACTAAAGTTAAGATCCTTCGTCACATCAGAAGTATTCATAAGGCAGGCAAACTAGCATATATTGTGACCAATTCAAAGCAGTTCAAATGCGGAGTATGTTCGAAAATTCTCAGCTCCAAAAGAGTTTTGGTTCGCCACAAAAAATCAGTTCATCAACGAATCTATGACTTCATGTGCGACAAATGTTCAGCAAAATTCGCTGATCGTGGGTCTCTAAATCAACATGTAATAAGTCAGCATCCTGATGGATTCAATTGTGAGTTGTGCAACAAAATTTGTGTTTCGATAGAGAATCTAGAGAAGCACGTAATAGCTTGCCGATTGATGCGGCAAAGTATTCACAATCAGGCACGTATCTTGACAACTCCTAAGCAGGTGAAATGTGAGATCTGTGAAAAAATTCTAGCCACCAAGAACTCTTATGACCGACATATGAAAGCAGTTCACAAACGAATCTATGACTTTAAGTGCGACAGATGTTCTGCTAAATTTAGAGATCGTAGTGACTtaaacaaacatcaaaaaatGCATCAAAGAGAGCCGAGtgctaaaagaaaatggtTTGATTGCGAAATGTGccataaaagttttgctctAAGACACAATCTAGAAAAGCACGAAATCGATTGTCGATTGAAGCGTCAAAGTATTCTCAATCAGGAATTGGAGACGACATCGCAGATACAAGAAGAATCAGATGAAGAAATGTTCGACAATCAAGATAACTTTGATTCCGATTCGTCTTCTGACTTAATGCCACTGAATATTCTCAAGCAGGAATTGAATAAGGCTtcacagaaagaaaaagctacagaagttgaagaaatattcatcaaacaagaaaactttgattccGATCCATCTTCTCAATTAAAGCCACAGAACATTCTCAAACATGAATTGGAAAAAGCTTCCCCGATCATACAAGAAACAATTCAtcttgaagaaatatttatcaaaccggaaatatttaaatccGATCAGTCGGATTCAGAAACatttgactttgaagaaTCTAATGAAGTTAACAATGAATCAGCGGAGGATGACGACATACCGGACATGCCACAAGTTGCTGATTTCAACACAATAACTAAAGAGGAAGAGATTACATGTGAACAGTTTGAGATTATAAGTGAACagtttgaaattgaaagtgaacAGTTTGAGATTACAACTAAAGAGGTTCctaaagaggaaaaaagcACAATTAAAAAGTCGCAGCTCGATAAAAAGCCAAAACGAGGAaattctaaaagaaaaatcaaaaaaggTGAAAGCGATGGAGAACCAGAGAACATTCAAGAATCAGAAATCGAAAGAAtcttcaaaggaaaaacattcaGTGTATTTTCAAAACGttttgaatgcaaattgtgtacaaaagattttaagaAGCTTCAAGAATTGAAGTTGCATTGCGTGTTTGACCATCGGatcaaaaagttcaaatgcaaaaaatGCAATCACTCGTTTCCTGAGCGCGGTCTCGTCCGGCAACATCTTCTTGAAAAACATTGGGAAGATTCGACTGACTGCTTTATCTTGCGAAACTACAAAATTCCAAATGAAAGTGCAAAATGTTTGCAATGCAGTCAAATTTTTGTACGAAAGGATTCGATGAAACGTCACATAGAACTTATGCACTCCGAAAGACCGGTTTTTCATTGTGATAAATGTGGTGCCACATTCAAAGATATTCGAACGGTTCGAATTCATGTAGAAAATCATCGTTCTGACAAGCAAGAGAAGACGCGATGGAAGACAATTAAAAAGTCTTGGACGTGTGAATTTTGCGGTGAAATAATTCTCGGACGAGTGAACTATTTTGCACATCGATGGAAAGCACATTTTAACTTTGAAGTTCGTAAATCGCGCTATCATTGTTTGATTTGTCAGCAAGTATGTAAAACTGAAATATCGGTTAAAAGACATCACGTTCAAGTTCATCAACAAGGAAAGTTATTAGTGAGACCATGCCGTTTATGCAATCTCAATTTCAAGCTTTACGATGACTTCAAAGCTCACattgaaaacacaaaaattcatcaacatGATCACATTTGTTCAATTTGTGGCGACGGATTCAAGCATCGCTTGGAACTCAgtaaacatgaaaaatcacACAGAGTTATCCCAGAAGACGAAAagAAATATGAGTGTGACTTTTGCGGTTATAAATTTCAACAGAAAGGTCCTGTTCTGGAACATTTGATTAAGAAGCACGGCGGACCGAAGAATCAGTATCGAGCGACATGTGAAGTCTGTGGAGAGTCAGAATGGGCATCTTCTTATGACTTTTACTGTCATCGACAAAACCACTTGgccaaaaaatttaaatgcagTTCCTGTGACAAATCCTTTAAAAAACGCCGAGATTTAAGAGACCATGAAATGGCTCACACCAATcgaagcaaaatcttcaaatgtCAATACGAAGGATGCTCTAAAGAGTACGAAATATATAGAAGCTATCGTTGGCATGTGGTGTACACTCATGAGCAGAATCGAACTCAATGCAAGACATGTTCTGAAGTTCTTCCATCGCAAGAAAAGCTGATTGCGCACATAGACGAGCATCATCCTGAAGAGCGGCGTTTCCGATGTAATAGAtgtggaaaaactttcaagacTCAGTTTACCAGCACCAAGCACATTAAACGCTGCAAGAAGAATCTTATAACCTTTGTTTAA
- Protein Sequence
- MAHVCTICSKAYDRKANLNYHFAHHFDEKPFSCEFCSNAYKTKADLRQHQRSHEKQLGMIFVCDVCQASFDSSTKLNVHKRDEHSIRKWRPLIADSKSGYYTCDIDGKTFLNLHKLKRHVEAVHLELRPFPCDLCDKTFKTAAELKKHYLWKYRPKTKTVRRPRPVPDEIIDWGKDEEIDVKIIRYKCSSCSELFTSRDFLSEHEQKFHPNASLVCDFCSQRFETKVKILRHIRSIHKAGKLAYIVTNSKQFKCGVCSKILSSKRVLVRHKKSVHQRIYDFMCDKCSAKFADRGSLNQHVISQHPDGFNCELCNKICVSIENLEKHVIACRLMRQSIHNQARILTTPKQVKCEICEKILATKNSYDRHMKAVHKRIYDFKCDRCSAKFRDRSDLNKHQKMHQREPSAKRKWFDCEMCHKSFALRHNLEKHEIDCRLKRQSILNQELETTSQIQEESDEEMFDNQDNFDSDSSSDLMPLNILKQELNKASQKEKATEVEEIFIKQENFDSDPSSQLKPQNILKHELEKASPIIQETIHLEEIFIKPEIFKSDQSDSETFDFEESNEVNNESAEDDDIPDMPQVADFNTITKEEEITCEQFEIISEQFEIESEQFEITTKEVPKEEKSTIKKSQLDKKPKRGNSKRKIKKGESDGEPENIQESEIERIFKGKTFSVFSKRFECKLCTKDFKKLQELKLHCVFDHRIKKFKCKKCNHSFPERGLVRQHLLEKHWEDSTDCFILRNYKIPNESAKCLQCSQIFVRKDSMKRHIELMHSERPVFHCDKCGATFKDIRTVRIHVENHRSDKQEKTRWKTIKKSWTCEFCGEIILGRVNYFAHRWKAHFNFEVRKSRYHCLICQQVCKTEISVKRHHVQVHQQGKLLVRPCRLCNLNFKLYDDFKAHIENTKIHQHDHICSICGDGFKHRLELSKHEKSHRVIPEDEKKYECDFCGYKFQQKGPVLEHLIKKHGGPKNQYRATCEVCGESEWASSYDFYCHRQNHLAKKFKCSSCDKSFKKRRDLRDHEMAHTNRSKIFKCQYEGCSKEYEIYRSYRWHVVYTHEQNRTQCKTCSEVLPSQEKLIAHIDEHHPEERRFRCNRCGKTFKTQFTSTKHIKRCKKNLITFV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -