Basic Information

Insect: Smittia aterrima
Gene Symbol: -
Assembly: GCA_033063855.1
Location: CP093829.1:5973432-5975228[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00091 0.038 14.4 0.2 2 23 167 189 166 189 0.93

2 14 0.0017 0.07 13.6 1.8 1 23 195 219 195 219 0.96

3 14 0.00036 0.015 15.7 3.4 1 23 225 247 225 247 0.99

4 14 2.9e-06 0.00012 22.3 1.4 1 23 252 276 252 276 0.98

5 14 0.035 1.4 9.5 2.7 1 23 286 310 286 310 0.96

6 14 0.00083 0.034 14.6 1.7 2 23 316 337 315 337 0.96

7 14 0.027 1.1 9.8 4.5 1 23 343 365 343 365 0.97

8 14 7.7e-06 0.00032 21.0 1.7 1 23 371 393 371 393 0.98

9 14 9.1e-05 0.0038 17.6 6.5 1 23 399 421 399 421 0.98

10 14 5.2e-06 0.00022 21.5 3.3 1 23 428 450 428 450 0.98

11 14 4.5e-06 0.00019 21.7 1.2 1 23 456 480 456 480 0.97

12 14 0.00011 0.0045 17.3 0.2 1 23 486 509 486 509 0.97

13 14 0.0042 0.17 12.4 0.3 1 23 515 537 515 537 0.96

14 14 0.00063 0.026 14.9 0.5 1 23 542 565 542 565 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00091	0.038	14.4	0.2	2	23	167	189	166	189	0.93
2	14	0.0017	0.07	13.6	1.8	1	23	195	219	195	219	0.96
3	14	0.00036	0.015	15.7	3.4	1	23	225	247	225	247	0.99
4	14	2.9e-06	0.00012	22.3	1.4	1	23	252	276	252	276	0.98
5	14	0.035	1.4	9.5	2.7	1	23	286	310	286	310	0.96
6	14	0.00083	0.034	14.6	1.7	2	23	316	337	315	337	0.96
7	14	0.027	1.1	9.8	4.5	1	23	343	365	343	365	0.97
8	14	7.7e-06	0.00032	21.0	1.7	1	23	371	393	371	393	0.98
9	14	9.1e-05	0.0038	17.6	6.5	1	23	399	421	399	421	0.98
10	14	5.2e-06	0.00022	21.5	3.3	1	23	428	450	428	450	0.98
11	14	4.5e-06	0.00019	21.7	1.2	1	23	456	480	456	480	0.97
12	14	0.00011	0.0045	17.3	0.2	1	23	486	509	486	509	0.97
13	14	0.0042	0.17	12.4	0.3	1	23	515	537	515	537	0.96
14	14	0.00063	0.026	14.9	0.5	1	23	542	565	542	565	0.95

Sequence Information

Coding Sequence: ATGAACGTAGAAAATTGTTGTCGAGTCTGCCTTGAAGAACTCTTCTGCAACACTGGCTACAATCTTCAAGAATTCATCGGCGAGTCGACTATCAGtgaattaatgaagaaaatttgtggAGACATCAACcTTGAAAACAAACCTGACGTGATCTGTGGAAATTGTTTGGCTCAACTAAAGTCTTCGTGTGAATTCAAACAGAAGTGCGAAACTTCTGATTTGTTTCTTAAAAACAtcaactttgaaagaaaatttcaaatcttcGACGATGACGACAACAGAACGATCGACGACTTCATTGATACGAATCTCTTCGATATTTTGGATCCTGATTACATCAGTGAACCAACAGAAGATGATCTCAAGCCAGAATTTGATAGTTTAGACTCAAAGACTCAGACAGAATTCAAGTTGGAAAGCAAAGAAACTCAATGTGACTACAAAGGACAAAGCAGTGagaagcgaaaatatttaaggaaCTTAGCGAGATCAATCATCAAATGCTCGAACTGCTCAGAGACATTCTCAGGACCATCAAAGTTAATTCAACATGCCAAAGACGTTCATCAAGATATCAAACCATTCAAGTGTCTTCATCCAGATTGCAATCGCAGCTATCAAAATCCCAAAGCATTGAAAGTTCATCGAAAGCTTCATCTTGTCGAGCGACCTTTCAAATGCGATGAGTGTCATTCATCATTCCATGTCAAGGCAAATCTTCTCTCTCATCTTAGAATCCACACGGGCGAGAAGTTTAAATGTAATGTCGCTGATTGCGATAAATCGTTCAGCACTCTCAGTTACTTCAAGCAACACCAACTTCTTCACATTCACGGAAATAACATTCCACGTCCTTTCATGTGTTCCTTTCTTGGCTGTAAAAAGTCGTTTCCTGACAAAAATTCTCATCGATCTCATCAAATGATTCATGAAGATAAGAAACTCAGTTGTGAGATTTGTTCAAGCAAATTCCGAACGAAGCAAAgcttgaaaattcattatcTCAAACACACAGACATCAAGCAATTCACTTGTCACATCTGCggaattcttttcaaataCAAAAGTCAATGCTTCGATCACGTTCGAGCTCACACAGCTAAACGAGAGTTCGAGTGCTTCCATTGTTCGAAGATGTTCATCAAGAAAGCTCTTCTTGCGGCTCACATGCAAACTCATCTGTCAGTTCGATCATTTAGTTGTAAAGAGTGCAACAAATCGTTCAAAACTTACAATTGTTTGTATGCTCATCGAAGACGACATCAAGAGAAGATTGCAAAGTTCTCCTGCGCGTCTTGTGATAGACACTTCACTTCACGATCTGATCTAACGAATCATCTACGAACTCACACGCAGGAGAAGAAATTCGCTTGTCACGTCGAGGGATGTTCAAAggttttcattcacaaagcAAATCTCAACGTTCACATTCGATCTCACAATGAGACAGAAGGATTTGAATGCGACATTTGTAGGAAGAGTCTCGCGAACTCAAACGCTCTTCGAGTTCATCTCAACAAAGTTCACAAGGCTGAGAAGAAATTCGCTTGTTCTTCCTGTACAATGAAGTTCGCGAGTCCTCAACTTCTAAGAATCCACGAAAACTCTCACAAACCGAAGAAATTCGCGTGCACATTGTGCAATCAAAGATACAATTTCGCAGCTGATCTAACTCGTCATTTAGAGAAAATGCATCAAGACAGACCAGGAGCCGCaaaaaaagatatttcagttacttaa
Protein Sequence: MNVENCCRVCLEELFCNTGYNLQEFIGESTISELMKKICGDINLENKPDVICGNCLAQLKSSCEFKQKCETSDLFLKNINFERKFQIFDDDDNRTIDDFIDTNLFDILDPDYISEPTEDDLKPEFDSLDSKTQTEFKLESKETQCDYKGQSSEKRKYLRNLARSIIKCSNCSETFSGPSKLIQHAKDVHQDIKPFKCLHPDCNRSYQNPKALKVHRKLHLVERPFKCDECHSSFHVKANLLSHLRIHTGEKFKCNVADCDKSFSTLSYFKQHQLLHIHGNNIPRPFMCSFLGCKKSFPDKNSHRSHQMIHEDKKLSCEICSSKFRTKQSLKIHYLKHTDIKQFTCHICGILFKYKSQCFDHVRAHTAKREFECFHCSKMFIKKALLAAHMQTHLSVRSFSCKECNKSFKTYNCLYAHRRRHQEKIAKFSCASCDRHFTSRSDLTNHLRTHTQEKKFACHVEGCSKVFIHKANLNVHIRSHNETEGFECDICRKSLANSNALRVHLNKVHKAEKKFACSSCTMKFASPQLLRIHENSHKPKKFACTLCNQRYNFAADLTRHLEKMHQDRPGAAKKDISVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -