Sate007967.1
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- -
- Assembly
- GCA_033063855.1
- Location
- CP093830.1:16725987-16731741[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.14 5.7 7.6 0.4 1 23 17 40 17 40 0.94 2 20 0.0078 0.32 11.5 0.0 1 21 48 68 48 71 0.90 3 20 0.00056 0.023 15.1 1.1 1 23 76 99 76 99 0.93 4 20 0.00043 0.018 15.4 1.5 1 23 105 128 105 128 0.94 5 20 0.0078 0.32 11.5 0.1 1 23 133 158 133 158 0.92 6 20 0.0015 0.062 13.7 0.7 1 22 164 187 164 189 0.91 7 20 0.035 1.4 9.4 0.3 2 23 352 373 351 373 0.94 8 20 0.00024 0.0099 16.3 3.6 1 23 379 401 379 401 0.97 9 20 0.0082 0.34 11.4 0.7 1 23 410 433 410 433 0.97 10 20 0.081 3.4 8.3 1.3 1 23 441 464 441 464 0.91 11 20 0.00075 0.031 14.7 1.4 1 23 469 492 469 492 0.93 12 20 0.00011 0.0047 17.3 1.0 1 23 498 521 498 521 0.95 13 20 6e-05 0.0025 18.1 0.2 1 23 526 551 526 551 0.93 14 20 0.092 3.8 8.1 0.8 1 19 677 695 677 699 0.87 15 20 0.0082 0.34 11.4 0.7 1 23 708 731 708 731 0.97 16 20 0.081 3.4 8.3 1.3 1 23 739 762 739 762 0.91 17 20 2.2e-05 0.00091 19.5 0.7 1 23 767 790 767 790 0.96 18 20 0.00043 0.018 15.4 1.5 1 23 796 819 796 819 0.94 19 20 0.0007 0.029 14.8 0.1 3 23 826 849 824 849 0.88 20 20 0.00037 0.015 15.7 0.2 1 22 855 878 855 880 0.90
Sequence Information
- Coding Sequence
- ATGTCTGAGCACTTTCCAACGCATATTCGAGATAAAAGAGAAACCGTGTATCCTTGCAGTACTTGTGGAAAGCTCTTTCAAGCATTTAGCAAAGTTTACGCACACaaaagaattattcatttaGAAAAACCCACAGGAAAGTTTACTTGTCCTATATGCGGAATTGAGTATCCTTACGTACCAAGCTTACAGAGACATTTTGATGCTGCTCATCGTAGAAAGGAACACAAATGCCAGGATTGTGATAAGATATTTTACACTCTTGAAGGCTTAAAGCTTCATTTCAACGCTGTCCACACTAATATTAAACCTTTCCAGTGCAGCTTGTGTGGACAGACTTTTGGACTGAATCGACAGCTTAAGAGACATACTGAACAGAAACACGAGGCGAAAAAGCACATTTGTAAAGAACCAGGCTGTATCAAATCGTTTAGCACAGCAGCAGGTCTTCAAATGCACATGGCGAGAGCTCATGTACaatcgaaagattttaaatgtgAATACGAAGATTGCGATAAAGCTTACGGCTCAGAAAGTCTCCTCAGAAGACATGTTTATTTCTATCACCTCAAATTAAAGATGAATTGTCCAATTGATGGCTGCAGCTATAAAAACATTAACAAAGTTTATATGAAATATCATATAAAGAATCGACATAAAGATCTCGGGTTCGAAGAATATCGACAACTTGAAGAAACTCTCTTTCCATTCGGTAATTTGTCAGACAATCTATGCGACCGATGCTTCACTAAGATTCAAGATATTGCATCGttcaagaaacaaattattcaaaagcaGGACCAAttgagaaatgatttccaaCCTTTCGTGAACGTGACTGTaaaacttgaacttgaagaCAGCGAGAccattttatttgaagaagtagttattaaaaaagaagagcCTGAAGAATTGATTCCTGAAGATATgaacaaaaatcaatatgAAGAAACTGCTTCGATCCGTCGTAGACCTTCAAGAAAAGCTGCCAATGTTAAAACTTATAAATTCAAGGATTCTGCTAAAGACTTTCCCAAACAATCATCAACTGTTTGCAAATTTTGTGGTAAAGTCTTAAAAAGTGACTCCATGGCTCGTCATTTAAGGGAAGTGCATTACAGGAAAATAAGATTTATTTGTGACTACTGTGGCAAAGGATTCTGTTCGAAGTCGAAAATGTCTGAGCACTTTCAAACGCATATTCGAGATAAAAGAGAAACCGTGTATCCTTGCAGTACTTGTGGAAAGCTCTTTCAAACATTTAGCAAAGTTTACGCACACaaaagaattattcatttaGAAAAACCAACAGGAAGGTTTATTTGTCCCAGCTGTGGAAAGGAATATCACGATGCGTGCAGCATACAGAGACATTTTGATGTTGCTCATCGTAGAAAGGAACACAAATGCCAGGATTGTGATAAGATATTTTACACTTTTGAAGGCTTAAAGGTTCATTTCAACGCTGTCCACACAGAAATTAAACCTTTCCAGTGCAGCTTGTGTGGACAGACTTTTGGACTGAATCGACAGCTTAAGAGACACATTGAACAGAAACACGAGGCGAAAAAGCACATTTGTAAGGAGCCAGACTGTAGCAAATCGTTTAGCAGAGCAGCAGGTCTTCAAATGCACATGGCGAGAGCTCATCTCTTTCCATTCGGTAATTTGTCAGACAAACTGTGCGACAGTTGCTTCATTAAGATTCAAGATATTGCATCGttcaagaaacaaattatcCAAAAGCAGGATCAActaagaaatgattttcaaccTTTCGTGAACGTGACTGTaaaacttgaacttgaagaCAGCGAGAccattttctttgaagaagtagttattaaaaaagaagagcCTGAAGAATTGATTCCTGAAGATATGAATCTCTTTCAAGAAATTGCTTCAATCCGTCGCAGACCTTCAAGAAAAGCTGCCAATGTTAAAACTTATAAATTCAAGGATTCTGCTAAAGACTTTCCCAaacaatcatcaacaaaatcgAAGCATTCCAGGAAAATAAGATTTATTTGTGACTACTGTGGCAAAGGATTCTGGTCGAAATCGAAAATGTCTGAGCACTTTCCAACGCATATTCGAGATAAAAGAGAAACCGTGTATCCTTGCAGTACTTGTGGAAAGCTCTTTCAAACATTTAGCAAAGTTTACGCACACaaaagaattattcatttaGAAAAACCAACAGGAAGGTTTATTTGTCCCAGCTGTGGAAAGGAATATCACGATGCGTGCAGCATACAGAGACATTTTGATGTTGCTCATCGTAGAAAGGAACACAAATGCCAGGATTGTGATAAGATATTTTACACTCTTGAAGGGTTAAAGCTTCATATCAGGGCTGTCCACACAGAAATTAAACCTTTCCAGTGCAGCTTGTGTGGACAGACTTTTGGACTGAATCGACAGCTTAAGAGACATACTGAACAGAAACACGAGGCGAAAAAGCACATTTGTATGGAGCCAGACTGTAGCAAATCGTTTAGCAGAGCAACAGGTCTTCAAATGCACATAGCGGTAGCTCATGTGGgatcaaaagattttgaatgTGAATACGAAGATTGCGATAAAGCTTACGCCTCAGCAAGTCTCCTTAGAAGACATGTAGATTTCTATCACCTCAAGTTAAGGATGAATTGTCCAATTGATGGCTGCAgttatgaaaactttaacaaaGTTTATATGAAATATCATATAAAGAATCGACATAAAGATCTCGGaTCTTTCCATTCGGTAATTTGTCAGACAAATTGTGTAGCAGTTGCTTCACTAAGATTCAATCTAAGAGAGATATTGAATCGTTCAAGAAACACGTTATCCAAAAGCAAGATCAGCTAA
- Protein Sequence
- MSEHFPTHIRDKRETVYPCSTCGKLFQAFSKVYAHKRIIHLEKPTGKFTCPICGIEYPYVPSLQRHFDAAHRRKEHKCQDCDKIFYTLEGLKLHFNAVHTNIKPFQCSLCGQTFGLNRQLKRHTEQKHEAKKHICKEPGCIKSFSTAAGLQMHMARAHVQSKDFKCEYEDCDKAYGSESLLRRHVYFYHLKLKMNCPIDGCSYKNINKVYMKYHIKNRHKDLGFEEYRQLEETLFPFGNLSDNLCDRCFTKIQDIASFKKQIIQKQDQLRNDFQPFVNVTVKLELEDSETILFEEVVIKKEEPEELIPEDMNKNQYEETASIRRRPSRKAANVKTYKFKDSAKDFPKQSSTVCKFCGKVLKSDSMARHLREVHYRKIRFICDYCGKGFCSKSKMSEHFQTHIRDKRETVYPCSTCGKLFQTFSKVYAHKRIIHLEKPTGRFICPSCGKEYHDACSIQRHFDVAHRRKEHKCQDCDKIFYTFEGLKVHFNAVHTEIKPFQCSLCGQTFGLNRQLKRHIEQKHEAKKHICKEPDCSKSFSRAAGLQMHMARAHLFPFGNLSDKLCDSCFIKIQDIASFKKQIIQKQDQLRNDFQPFVNVTVKLELEDSETIFFEEVVIKKEEPEELIPEDMNLFQEIASIRRRPSRKAANVKTYKFKDSAKDFPKQSSTKSKHSRKIRFICDYCGKGFWSKSKMSEHFPTHIRDKRETVYPCSTCGKLFQTFSKVYAHKRIIHLEKPTGRFICPSCGKEYHDACSIQRHFDVAHRRKEHKCQDCDKIFYTLEGLKLHIRAVHTEIKPFQCSLCGQTFGLNRQLKRHTEQKHEAKKHICMEPDCSKSFSRATGLQMHIAVAHVGSKDFECEYEDCDKAYASASLLRRHVDFYHLKLRMNCPIDGCSYENFNKVYMKYHIKNRHKDLGSFHSVICQTNCVAVASLRFNLREILNRSRNTLSKSKIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -