Basic Information

Insect: Smittia aterrima
Gene Symbol: -
Assembly: GCA_033063855.1
Location: CP093831.1:24448012-24450134[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00015 0.0063 16.9 4.3 1 23 170 193 170 193 0.96

2 13 3e-07 1.2e-05 25.4 0.8 1 23 220 242 220 242 0.99

3 13 0.0011 0.045 14.2 0.6 1 19 249 267 249 271 0.95

4 13 2.9e-05 0.0012 19.2 0.5 1 23 288 310 288 310 0.95

5 13 0.17 7.1 7.3 2.9 1 23 320 342 320 342 0.97

6 13 0.96 40 4.9 0.1 1 23 348 370 348 370 0.93

7 13 0.00028 0.012 16.1 3.0 1 23 376 398 376 398 0.98

8 13 5.1e-07 2.1e-05 24.7 0.4 1 23 406 428 406 428 0.95

9 13 0.00017 0.0069 16.8 0.5 1 23 434 456 434 456 0.98

10 13 2.6e-06 0.00011 22.4 2.3 1 23 462 484 462 484 0.98

11 13 2.1e-07 8.7e-06 25.9 1.8 1 23 490 512 490 512 0.99

12 13 1.7e-06 7e-05 23.0 1.4 1 23 518 540 518 540 0.99

13 13 7.2e-05 0.003 17.9 0.5 1 23 546 568 546 568 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00015	0.0063	16.9	4.3	1	23	170	193	170	193	0.96
2	13	3e-07	1.2e-05	25.4	0.8	1	23	220	242	220	242	0.99
3	13	0.0011	0.045	14.2	0.6	1	19	249	267	249	271	0.95
4	13	2.9e-05	0.0012	19.2	0.5	1	23	288	310	288	310	0.95
5	13	0.17	7.1	7.3	2.9	1	23	320	342	320	342	0.97
6	13	0.96	40	4.9	0.1	1	23	348	370	348	370	0.93
7	13	0.00028	0.012	16.1	3.0	1	23	376	398	376	398	0.98
8	13	5.1e-07	2.1e-05	24.7	0.4	1	23	406	428	406	428	0.95
9	13	0.00017	0.0069	16.8	0.5	1	23	434	456	434	456	0.98
10	13	2.6e-06	0.00011	22.4	2.3	1	23	462	484	462	484	0.98
11	13	2.1e-07	8.7e-06	25.9	1.8	1	23	490	512	490	512	0.99
12	13	1.7e-06	7e-05	23.0	1.4	1	23	518	540	518	540	0.99
13	13	7.2e-05	0.003	17.9	0.5	1	23	546	568	546	568	0.99

Sequence Information

Coding Sequence: ATGGAAGTAAGTGTGATAGACATCGCCAGTTCATGTAGAGCATGtcttcaatcaacaaatgaCCTTGTTTCGCTATTTGAACCGCTGTTCGAAGAATCAACGTTCTCAAAAGTTCTAACAAAAATTCTCACAAACATTAGCATCGTGAAAGGAGATAAATTGAGCGAATCGATTTGTAGCGAGTGTCGAACAAATGCAATCAATTTCTACAAGTTCCAGGAAATGTGCGAAACTAATGACAGAAGAATTCGTACGCTGATCGAcagcgaaataaaatttgagatCGACAATACGATCAAAACAGAAGAAGGCAGCAGTGAAATTTTGCATGATGGACTGAGTCTAATTAGCAAGATCGAGGCTCAACTTGAAGTTGATTCTAATGATGTGATGTTAACCGAGTTAAAACCATTATCAGATGAATACGAATCGGAGCAAGAAGGTAGCAACGATAGTGATGAAGAATCGTCGTCAGAATCAGAAGAGGATGCAGCTAAGTCTagcaatttttattgtgattCATGCAATAAACACTTTAGCTCTAACCGGAAACTAGAGCGACATCTAAAGAATGTGcatcaagaaaataattgtaaATCGGCTGGATCAGAAGACAATGATAGTTCTTCCGGCGGTGACGATGaatcaacgaaaattttcacttgcGATTCATGCCCGAAGACATTTAAAAAGCCATCGCTACTTGCCCGTCATATCAAAACACATGATCCCAATAAAAGGCCTCACGAATGTTCAAAATGCCAGAAACGCTTTCCATCGCAAGTCGCACTTGTTCGACATGATATTTTACATTCAGAACTTGTAGAACGATCAAAGATCAATCGACCTGACCCTCAAGACTTTAGCTGTATTGTCTGTGGACGCACATTCAAGTCTCCCGAGTCGCTGAGTTCTCACCTTAAAActcataaaaagaaatcgccTGAAAATCAAGAATACACCTGCAAATTGTGCCATGACGTTTTCCCAACATTCACCGATATCACAAGGCATTCGAAGAATCACATTGAAAATGCAACGCATCAATGTGCAATTTGCAACAAGTTATTAGTGGTTGGTGATGAACTGATTGATCATTTCTTGCGACACAAAGGTATGAAGCCTCATCAGTGTCCAGTTTGTGAGAAATCCTTCTTGAAGCTTCACAAACTTAATGTTCATATGAGAATTCATTCGGATGATAAATTGAGCAGTTTTCTCTGCCCTGAATGTGGAAAAAGTCTatcaacaaacgaaaatctGAAGCGGCATCTTATTAGACACACTGGAATTAAAcCTTACGCCTGCTCGTTATGCCCATCAAGATTTGTATTCAAGTCAGGACTAACCAGTCACATGTCGACACATACCGGTCTCAAGCCTTTTATTTGCGATATCTGCGGTTCATCATTCACAAAAAGCTCTTCACTTACCAAACATCATCGGATTCATACGGGCGAAcgACCTTACGTCTGTGAAGTGTGCGGAATGCGTTTCAACTCATCTGATCATGTTAAAAGACATATGCGAACGCATACTGGAGAAAGACCCTACAAGTGTCAGTATTGTGATCGAAGTTATGCGCAATCTAACGATCTTTTAAAACATACAAGAATCCATGTTGGCGAGAACACTTATAAATGTAATCTCTGCACAGCAGCGTTTCGGCTACAAGCCCAGCTTCGTGAGCACTACCGAATACATTACGATGCTAGCAGTTTAACTCTTCGTTCTGATTCGCTTGATCAAAAGCCTTCCATGACAGAAATGGAGTTGATTGTCGAAGAACAGCAGAGAAGAGATCACGAACTCCAATTCGTACAGCAAATGATGAAGAGCGAGACCGACGATCTTATAAATGAGAAACTTCTCtacaagaaacaaaagataGACCAATGa
Protein Sequence: MEVSVIDIASSCRACLQSTNDLVSLFEPLFEESTFSKVLTKILTNISIVKGDKLSESICSECRTNAINFYKFQEMCETNDRRIRTLIDSEIKFEIDNTIKTEEGSSEILHDGLSLISKIEAQLEVDSNDVMLTELKPLSDEYESEQEGSNDSDEESSSESEEDAAKSSNFYCDSCNKHFSSNRKLERHLKNVHQENNCKSAGSEDNDSSSGGDDESTKIFTCDSCPKTFKKPSLLARHIKTHDPNKRPHECSKCQKRFPSQVALVRHDILHSELVERSKINRPDPQDFSCIVCGRTFKSPESLSSHLKTHKKKSPENQEYTCKLCHDVFPTFTDITRHSKNHIENATHQCAICNKLLVVGDELIDHFLRHKGMKPHQCPVCEKSFLKLHKLNVHMRIHSDDKLSSFLCPECGKSLSTNENLKRHLIRHTGIKPYACSLCPSRFVFKSGLTSHMSTHTGLKPFICDICGSSFTKSSSLTKHHRIHTGERPYVCEVCGMRFNSSDHVKRHMRTHTGERPYKCQYCDRSYAQSNDLLKHTRIHVGENTYKCNLCTAAFRLQAQLREHYRIHYDASSLTLRSDSLDQKPSMTEMELIVEEQQRRDHELQFVQQMMKSETDDLINEKLLYKKQKIDQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -