Sate000249.1
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- -
- Assembly
- GCA_033063855.1
- Location
- CP093829.1:1237544-1240268[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.35 15 6.3 0.1 2 23 5 26 4 26 0.91 2 22 0.0016 0.066 13.7 3.2 2 23 33 54 32 54 0.96 3 22 0.00011 0.0044 17.4 0.1 1 23 60 82 60 82 0.95 4 22 0.0001 0.0042 17.4 1.9 1 23 89 111 89 111 0.99 5 22 3.6 1.5e+02 3.1 2.4 2 23 121 140 121 140 0.72 6 22 1e-05 0.00043 20.6 0.7 1 23 146 169 146 169 0.98 7 22 5.8e-05 0.0024 18.2 0.5 1 23 175 199 175 199 0.98 8 22 0.00033 0.014 15.8 2.0 2 23 231 253 231 253 0.97 9 22 0.00084 0.035 14.5 1.9 1 23 259 282 259 282 0.96 10 22 3.8e-05 0.0016 18.8 0.9 2 23 396 418 396 418 0.90 11 22 0.00055 0.023 15.1 0.7 1 23 423 446 423 446 0.97 12 22 0.0016 0.068 13.6 3.8 1 23 452 474 452 475 0.95 13 22 7.2e-07 3e-05 24.2 1.4 1 23 483 506 483 506 0.95 14 22 0.34 14 6.3 3.2 1 23 517 540 517 541 0.94 15 22 0.16 6.5 7.4 1.4 2 23 549 570 549 570 0.96 16 22 5.8 2.4e+02 2.5 0.1 1 23 574 596 574 596 0.76 17 22 0.0011 0.047 14.1 3.7 1 23 606 628 606 628 0.98 18 22 0.042 1.7 9.2 0.4 1 23 635 657 635 657 0.92 19 22 4.1e-06 0.00017 21.8 2.8 1 23 663 685 663 685 0.98 20 22 0.0037 0.16 12.5 1.6 1 23 691 713 691 713 0.98 21 22 0.024 1 9.9 0.4 1 19 720 738 720 738 0.94 22 22 0.12 4.9 7.8 6.9 3 23 751 772 751 772 0.97
Sequence Information
- Coding Sequence
- atGTCGACTATCGTCTGTGAGATCTGTGGAGAAGTCTCAGAGAAGAATAAATACGAAAGACACATCAAATTTGGACATAAAGCGAAACGAGAGAACAAATGCCAGCTCTGTCAAAAGGAATTTACAAGCTTTTATAATCTTCAGTATCATCTCGCTCATCACAAGAACGCTCGCGAGTTTCTTTGCAGTGAATGTCCAAGAGCATATAACACGGTAGCAGATCTTACACAACACCAGCGAGTCCACGAGAAACAAAGAGATCCATTCAGATGTGAAATGTGCGGCTTGATCTTCCAGATCCGAAGTAAATTCAAGACTCACATGAGAACACATCAAAGCTTAACGCTGAAAGGTCCAAGAGAATGTCCAATctgtaaaaagtttttcgtctGTCTCTCGAGTCACAACCGAACTGTTCATTTGAAGTTAAGAACGTACGAATGTAATCAATGTGACAAGACCTTCGGAAAGAAATCAGGCTTAGATCGTCATACTCTGACAGTTCACGACAAGATTCGAGCCTTCAAATGTGATTTTGTTGGATGCTTAAGAGCGTTTGGCGAAAAATCTCAGTTGACTAAACATATGAGAATACACGAAGAGAAAGAGGCTTCATACTGCAGCTTTTGCAAGATAAACGTCGGAGATATCAAGATCCACTTCGAAGAAGAGCATCAAGATTTCACTGAACGTtgtaaaatttgtttcaaaaggTTTTCTAAACTGAGATCATTGGAACTTCACATAAAAGTATTTCATACAATcgagcaaaactttttctgcgACTTTTGTCCAAATAAAGGATTTGCTAAAAGATCTCAACTAAAACGACATCTTCGATCTCATAAGGAACTCAATAAGAACAATGTGAGGCTggaacaaatattttttgatgatcTACCTGAATCTATTGAAGGCACTGATGAGTTGTCTTCGCCGGGAGTTGCTGTAGATGTTTTAGTCGAtattaaaacagaaattatgAGCGATGATGAAACTCAGAGAAAGAACGAACTTGCTAACATTTGCGATCAACAAATCGATGTCGTACAAGTTATTAATCTAGAAGATGATGCAGCTATCTCAAATAGGGAGGAAAAGGATGAACAGGATGATCTCACAACACTATCTGCTTTACCTCAACATTGCGAGGCTGCCCacgaaatttcaaattctgCAAAACGAACTTGCCATGTCTgtgataaaacattttcaaaagaacGTAATTTGCAACTTCACATTGTTGCAGTTCActcagagaaatatttcgaatgcGAAATTTgcttaaaaaagttttctttcaagtcTGCAAAGGAGCGCCACGTTAAAGTTGttcattttaatcaaagATCTCATCAGTGTCAAAAATgccaaaaattatttggCACGAAAGTGGATTTGACTAATCACATTGCTTATCATCACAGCTCTGAGGacatcagaaaatatttttgCCCCATttgtgaaaaatcatttacatCATCGAGTGCGTTGACCAGACATCATAAAGGAGTTCACGAGaatatcaaacaaaaacgaaCTCGCGATTATCGCTGCAAGTTTTGCAAAGAAGtcatgaaaaacaaatatcaaaaggaaaagcatCTCGCGTTAGTTCATCACGACGGCTTGAAACCAAAGAGAACGTGTCAACTTTGTGATGCTCATTTTGAGCTTTTCGATGAGTTTAGAAAACATATCGATCAACACGTCAATGCATTTATTTGTGTGATTTGTGGTAAAGATAATCCGGATCAGATTGAAAAGGATGTTCACATGGAAAGTCATAAACATATTAACTTAGATCTGAGACGGTTTTCCTGTGACTTCTGTGGCCATAAActcttcaacaaaattcaacTTAAAGTCCACATGAGAAAGCACATGAaggaaacaaacttttacgTCTGCGAAATATGCGGACAGAGCTATAAGTTCATTGCGCCATTCCTTTATCACAAGAAACTCCACAAAGGCGTCAAAGAATTTGTTTGCACACATTGCGGCAAAGAGTTTATGAGAAAGCAGGACCTTACGATTCACACACGAAGTCACACACAAGAAAAGCCTTTTaaGTGCACAGTTTGTGAAAAGTGTTTCGCTGCCCgacaaattcttcaaattcatcttcaaactCATTCGTCAACTCGGAAAGTTTATAATTGTCAAGACTGCCAATTAACGTTCTCGGATAAAAACCAAGCGAGAATTCATGACGAAGATTATCATCCTGAGCGTCGACCGATTTGGTGTCACTTATGCCGAAAATCATTCAAGCTCGTGCATCTTTTAAGGATTCACATGAAGCACATACACAAACCTGATGAAACGATCGAGTTGCCAGCAgcaaacgatttcattttcaataacTGGAATCTGTAA
- Protein Sequence
- MSTIVCEICGEVSEKNKYERHIKFGHKAKRENKCQLCQKEFTSFYNLQYHLAHHKNAREFLCSECPRAYNTVADLTQHQRVHEKQRDPFRCEMCGLIFQIRSKFKTHMRTHQSLTLKGPRECPICKKFFVCLSSHNRTVHLKLRTYECNQCDKTFGKKSGLDRHTLTVHDKIRAFKCDFVGCLRAFGEKSQLTKHMRIHEEKEASYCSFCKINVGDIKIHFEEEHQDFTERCKICFKRFSKLRSLELHIKVFHTIEQNFFCDFCPNKGFAKRSQLKRHLRSHKELNKNNVRLEQIFFDDLPESIEGTDELSSPGVAVDVLVDIKTEIMSDDETQRKNELANICDQQIDVVQVINLEDDAAISNREEKDEQDDLTTLSALPQHCEAAHEISNSAKRTCHVCDKTFSKERNLQLHIVAVHSEKYFECEICLKKFSFKSAKERHVKVVHFNQRSHQCQKCQKLFGTKVDLTNHIAYHHSSEDIRKYFCPICEKSFTSSSALTRHHKGVHENIKQKRTRDYRCKFCKEVMKNKYQKEKHLALVHHDGLKPKRTCQLCDAHFELFDEFRKHIDQHVNAFICVICGKDNPDQIEKDVHMESHKHINLDLRRFSCDFCGHKLFNKIQLKVHMRKHMKETNFYVCEICGQSYKFIAPFLYHKKLHKGVKEFVCTHCGKEFMRKQDLTIHTRSHTQEKPFKCTVCEKCFAARQILQIHLQTHSSTRKVYNCQDCQLTFSDKNQARIHDEDYHPERRPIWCHLCRKSFKLVHLLRIHMKHIHKPDETIELPAANDFIFNNWNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -