Sate000251.1
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- -
- Assembly
- GCA_033063855.1
- Location
- CP093829.1:1244205-1247892[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 3.8 1.6e+02 3.0 0.1 3 23 7 27 5 27 0.88 2 30 1.6e-05 0.00066 20.0 1.5 2 23 34 55 33 55 0.96 3 30 1.2e-05 0.00051 20.3 0.3 1 23 61 84 61 84 0.93 4 30 0.007 0.29 11.6 1.0 2 23 90 111 89 111 0.97 5 30 6.2 2.6e+02 2.4 0.4 2 16 121 132 120 140 0.70 6 30 2.8e-07 1.1e-05 25.5 0.4 1 23 146 169 146 169 0.96 7 30 0.002 0.084 13.3 1.9 1 23 175 199 175 199 0.97 8 30 0.06 2.5 8.7 2.8 3 23 230 251 228 251 0.92 9 30 0.079 3.3 8.3 0.8 3 23 259 280 257 280 0.92 10 30 3.7 1.5e+02 3.1 0.3 2 17 311 323 311 330 0.68 11 30 0.00037 0.015 15.7 0.2 2 23 337 359 337 359 0.94 12 30 0.00028 0.011 16.1 0.8 1 23 375 399 375 399 0.98 13 30 2.5 1e+02 3.6 4.2 2 23 405 424 405 424 0.86 14 30 8.9e-05 0.0037 17.6 1.3 3 23 431 452 431 452 0.98 15 30 0.17 6.9 7.3 0.3 1 23 458 481 458 481 0.95 16 30 0.082 3.4 8.3 3.8 2 23 594 616 593 616 0.95 17 30 0.0074 0.31 11.6 2.3 1 23 620 642 620 642 0.96 18 30 0.00015 0.0064 16.9 3.1 1 23 645 668 645 668 0.91 19 30 0.031 1.3 9.6 5.3 1 23 673 696 673 696 0.94 20 30 0.00078 0.033 14.6 0.5 2 23 716 738 715 738 0.92 21 30 0.26 11 6.7 1.7 1 23 743 766 743 766 0.87 22 30 0.00023 0.0096 16.3 6.1 1 23 772 794 772 795 0.96 23 30 3.5e-06 0.00014 22.0 3.9 2 23 806 828 805 828 0.96 24 30 2.1 85 3.9 0.3 2 20 874 892 874 894 0.92 25 30 0.0006 0.025 15.0 0.2 1 23 931 953 931 953 0.98 26 30 0.0053 0.22 12.0 0.7 1 23 960 982 960 982 0.97 27 30 9.8e-05 0.0041 17.5 0.5 1 23 988 1010 988 1010 0.98 28 30 0.00048 0.02 15.3 0.2 1 23 1016 1038 1016 1038 0.99 29 30 0.0021 0.088 13.3 1.4 1 23 1045 1068 1045 1068 0.94 30 30 0.0033 0.14 12.6 1.3 1 23 1074 1097 1074 1097 0.95
Sequence Information
- Coding Sequence
- ATGCCGGAAGAGATTATCTGTGAATTTTGTGGGCTCTTGGTGGAGAAGAGCAAATACGAGAGGCACATTCTTACTGGGCACAAAGATAAGAATGATCTCAAGTGCAAATACTGCACTCGACAATTTACGAGCCAATATAACTTGGAAAGTCATATTGCTCAACATATCAACGCAAGGAGCTTTCTATGTGAAGAATGTCCCAAGACGTATAACACATCAGCGGATCTTAATCGACACATGGTTAGAAGTCACACGAATCGAGTTCTCAAATGCGACCAGTGTCAGATCGAGTTTCCAAgcacaagaaaattcaatcaacatATGAACCTTCATCTCGCGTCAGTTCAAAAAGGATCGAAAGAGTGCTCCATTTGCAATAAAGCAGTCAACAACTTTGATTTACATTATCGAACTGTTCATCTTAAACTCAAGTCTTATACATGCGATCAATGTGGAAAGGAATTCGCTCGaaacaaagatttaaatCGACACATTCGAGATGTTCATGAGAAGATAAGACCACACAAGTGCGAAAAGCCCAACTGCAAACGAGAGTTTAGTGAACTGTCACAGCTTCTTAAACATCTCGACACGCatgaagatggaaaaatGCCACACTGCTCGATTTGCAAGAAAGATGTCGAAGATATCTGCGAACATTATAAAAAATTCCAcgacaaacttttctgtaaaatttgctttcgaaCTTTTACAAGAACACGAAACATCAGAGATCACAACAAATTATTCCATTCAACAGAACGAAGCttattttgtgatttttgtCCCGGGAGAGGATTCATCAGCAAACGTCAAATAAGAAAACACATGAGACAACATCGAAAATATCCAAATGAACCCAAAGTCGTGAACGAACCAAGTGAAACGGATAAATCAACAACTGAAGAGTTATTACCGAATGGGCTAAGAAAATGTCCAATCTGTTCCAAGGAGGTGAAGAATCTTTACAGTCACAATCGAGTTATTCAtcttaaaatcaaaagtcCTGAGTGTAGCGCTTGTGGAAGAACGTTCGCAACGAAATCTGGATTAGACAGGCActggaaaaatgttcataCCGATACAGAACCTGTGTTCATGCCTTTAGAGCTCAACAAAACATACAAATGTGATTTTGATCGATGCAATTGGGAGTTCCCACAGAAAAACAAGTTAATCACGCATATGAAGATCCACACGAAAACCCATAATTATTGCAAGTTCtgtaaaaaatgttttgataatCTGAAAGAACATTACGAAGTCGATCATTCGGATTTGAAAGATTGGTGCTATCAGTGCAATAAACCATTTTCAAACGAGAAGACACTTTCGATTCATATGAGAACAAGTCACGATTTTGAACACAACTTTATTTGTGATCTATGTCCGGGAAGAGGATTCGCTgagaaatatcaaatcgCTCATCACATTAGAAGACATTTGAGAAATGCCAAACGAACTGGAAGCTTAGCATTGAAGAAAGTTGTTCGTACGGTTGCAGAAAAGCCAATCAAAGTAGAACCGCCGGAAATTGTTGTGTTcaacattaaaaatgaaataattgacgACGATCacgaaacaaactttgaacCTCGAACGAAAGTAAAGCTGGAGCCTGAAGAAAACGAGGAGGAGAACGAAGACAACGGAATGACTGATGGCAATGACTTTTGTTCTTATTCCATGAGCGACGAcgagaacgaagaaaagcttcCACTTAAAATCGAACTCAAAGTAGAACCACAAGTCTTTGACTTCGGTGAAAACGATTTATTGAGATGTAAGCTTTGTAAAGAGAATTTCCATGGAAAGGATAACTTCAAAACACATTTCATGTCGGAGCATGTTGTGATGCATAATTGCAAGGACtgtaatgaaaagtttccgatAAAAACTCTTCTGACTGATCATCGTGAAAAGCACAAGCAATTCAAATGCACGGAATGCGACAAAGTCTTCTACAAAAGTCAACATCTTAAAGTTCACTTCTCTGCTCTTCACACTAAcgagaagtttcattgttCACATTGCGATAAATCTTTTGGTTTTAAAAGATCTTTAGATTATCACGTTAAAGCATATCACTCGAAAAAGGATGAAGAAGCTCCGACTACGACTGGCACTGCTGCATCGAAGAATAAAACTTGCAACATTTGTggacaaaacttttatacCGCAAAATATCTCAAGTTGCATGTTCTCGCAAAGCACAGCGAGAAACAATTCCAATGCGAGTTTTGTGAGAAGAAGTTCTCGTTTGAACTATCAAGAGATCGTCACAGGAATGCTCTTCACCTTAATCAAAGGCCGTTCCAGTGTGAGCATTGcgataaaaattatgcaTCGAAACGTGACTTGGCTCATCACACGAAAGTTCATCACACATTCAATCCTGCTGACATCGAAGAGTTGAAATGCGATCTCTGCGACAAACGGTTTACAACGAGTCAAAACCTGAAGCGACATCATCAAACCATTCacgaaaacttaaaattaaagactCGAGTACAAATTCGTCAGTGCAAGTTCTGCAAGGAAACTTTTGGTAAAGCAGGAGGATATCAGTTAAAGAAACATATTCTTCAAGTTCACAAAAGTGGATTGAAACCGAAGAGAACTTGTCAGCATTGCAATGTTGATTTTGTTCTTTacgaaaagttcaaagagcACTTAGAGGCCAATGAAGATTgtttcatttgcataatttgCGGTCTTCCACACAAAAGTCGTGTTGATCTAGAGTTCCACGGGAAATGTCATAAATACATTGAAACAGAGCTGCGAAAGTTTATGTGCGATCTTTGTCCAAGCAGATTTCCTGGAAAAGCTTCGTTGATGAATCACATGAAGTCACACATGAAGCAGTCAAACTTCTATGTCTGCGATATCTGTGGACAAGGATTCAAATATGCTGGACCTTATCATTATCACAAAAAGGTCCACAAAGgtcaaaaagatttcgTTTGCACATTCTgtggaaaagctttcatccTAAAGAGTGAGATGGTCATTCACACTCGTAAGCACACTCAAGAAAAGCCTTTCAgATGCTTAATTTGTGACGATCGGTTTGCTTCTCAGCCATTACTGAAAGCTCATCTTCAAACTCATCCCGCAACGAGAACTGACTATAGTTGCACGCAATGTAATTTAAACTTCTACGATCGCAAGGAACTGAAAGTCCATGAGAAGGCTTTTCATCTCGACACACTTCAGTTCAGCTGCAACGTTTGTAAAGAGTCATTCAGGTTGGAGCATGTTTTGAGAATTCACATGAATGCTAAACATAAACATGAGCAGGCGCTCGATTATGTCCGAGAAGATTTAACTTACTGA
- Protein Sequence
- MPEEIICEFCGLLVEKSKYERHILTGHKDKNDLKCKYCTRQFTSQYNLESHIAQHINARSFLCEECPKTYNTSADLNRHMVRSHTNRVLKCDQCQIEFPSTRKFNQHMNLHLASVQKGSKECSICNKAVNNFDLHYRTVHLKLKSYTCDQCGKEFARNKDLNRHIRDVHEKIRPHKCEKPNCKREFSELSQLLKHLDTHEDGKMPHCSICKKDVEDICEHYKKFHDKLFCKICFRTFTRTRNIRDHNKLFHSTERSLFCDFCPGRGFISKRQIRKHMRQHRKYPNEPKVVNEPSETDKSTTEELLPNGLRKCPICSKEVKNLYSHNRVIHLKIKSPECSACGRTFATKSGLDRHWKNVHTDTEPVFMPLELNKTYKCDFDRCNWEFPQKNKLITHMKIHTKTHNYCKFCKKCFDNLKEHYEVDHSDLKDWCYQCNKPFSNEKTLSIHMRTSHDFEHNFICDLCPGRGFAEKYQIAHHIRRHLRNAKRTGSLALKKVVRTVAEKPIKVEPPEIVVFNIKNEIIDDDHETNFEPRTKVKLEPEENEEENEDNGMTDGNDFCSYSMSDDENEEKLPLKIELKVEPQVFDFGENDLLRCKLCKENFHGKDNFKTHFMSEHVVMHNCKDCNEKFPIKTLLTDHREKHKQFKCTECDKVFYKSQHLKVHFSALHTNEKFHCSHCDKSFGFKRSLDYHVKAYHSKKDEEAPTTTGTAASKNKTCNICGQNFYTAKYLKLHVLAKHSEKQFQCEFCEKKFSFELSRDRHRNALHLNQRPFQCEHCDKNYASKRDLAHHTKVHHTFNPADIEELKCDLCDKRFTTSQNLKRHHQTIHENLKLKTRVQIRQCKFCKETFGKAGGYQLKKHILQVHKSGLKPKRTCQHCNVDFVLYEKFKEHLEANEDCFICIICGLPHKSRVDLEFHGKCHKYIETELRKFMCDLCPSRFPGKASLMNHMKSHMKQSNFYVCDICGQGFKYAGPYHYHKKVHKGQKDFVCTFCGKAFILKSEMVIHTRKHTQEKPFRCLICDDRFASQPLLKAHLQTHPATRTDYSCTQCNLNFYDRKELKVHEKAFHLDTLQFSCNVCKESFRLEHVLRIHMNAKHKHEQALDYVREDLTY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -