Sate009359.1
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- -
- Assembly
- GCA_033063855.1
- Location
- CP093831.1:510095-513726[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.99 41 4.9 0.0 2 23 21 41 20 41 0.93 2 28 0.00047 0.019 15.3 2.3 3 23 49 69 48 69 0.96 3 28 4.3e-05 0.0018 18.6 0.4 3 23 77 97 76 97 0.99 4 28 4.5e-06 0.00019 21.7 5.4 1 23 104 126 104 126 0.98 5 28 0.1 4.4 7.9 0.3 2 23 133 152 132 152 0.92 6 28 0.00061 0.025 15.0 0.4 1 23 158 181 158 181 0.95 7 28 5.3e-05 0.0022 18.3 0.7 3 23 189 209 187 209 0.96 8 28 0.0013 0.056 13.9 0.2 2 23 237 259 236 259 0.93 9 28 0.00019 0.0078 16.6 0.6 3 23 267 288 266 288 0.97 10 28 0.02 0.81 10.2 0.0 1 20 313 332 313 334 0.93 11 28 0.00013 0.0053 17.1 3.6 1 23 484 507 484 507 0.98 12 28 0.059 2.5 8.7 0.6 2 23 515 539 514 539 0.93 13 28 0.0053 0.22 12.0 0.1 2 23 562 584 561 584 0.94 14 28 3.5e-05 0.0014 18.9 0.5 1 23 631 654 631 654 0.95 15 28 0.0003 0.012 15.9 0.4 1 23 660 685 660 685 0.91 16 28 0.0012 0.05 14.0 0.4 2 23 694 716 694 716 0.93 17 28 1.4e-05 0.00059 20.1 0.7 1 23 722 745 722 745 0.96 18 28 0.00038 0.016 15.6 0.2 1 23 751 776 751 776 0.95 19 28 0.076 3.2 8.4 1.6 2 23 789 811 788 811 0.96 20 28 0.16 6.8 7.3 2.0 1 21 820 840 820 843 0.88 21 28 1.4 56 4.4 2.1 2 23 852 873 852 873 0.97 22 28 0.0036 0.15 12.6 0.5 1 23 877 899 877 899 0.95 23 28 0.00018 0.0073 16.7 1.4 1 23 909 931 909 931 0.98 24 28 0.012 0.52 10.8 1.0 1 23 937 959 937 959 0.93 25 28 0.096 4 8.1 0.9 1 23 965 987 965 987 0.96 26 28 1.7e-05 0.00072 19.8 4.6 1 23 993 1015 993 1015 0.99 27 28 2.3 93 3.8 0.1 1 23 1020 1043 1020 1043 0.90 28 28 0.0016 0.065 13.7 5.1 1 21 1049 1069 1049 1070 0.94
Sequence Information
- Coding Sequence
- ATGTATCAAAGCTCATTCGTCGCTGCGGAGCAGTGCTCagctgaaaatgttttacaaaTTGTTTGCGAAATCTGTGGGAACTCAGTGCCGAGAATCGATTACGACAGACACTTACGGACTCATAAAGAAAAGAGGGTTGAAATTTGCAAGATATGCTTTAAAGCCTTTACAAataTTTCTAACTTCAAGTATCATATGGCTCATCACGGAACAGAACGACCATGGCTTTGTACAGAATGTCCTAAGAACTATAAAACGAAGATTGATTTGATCCAACATCAACGTGTCCATGATAAAGCGCGCGATCCATTTCATTGCTCAATTTGTGGACAATTCTTCAAAACGAGAAGCAACTTCAACACTCACTTAAGAACACACAGcGTCAAAGGACCACAAAAATGCGTAGAATGTGACAAGATATTTGTTAACTTACGATCTCACATTCAAATGGTTCATCAAAAGATTCGGACGCACATATGCAATCTCTGTGAAAAAGCCTTCGGAAAGAAGTCGGGTTTGGATAGACATATCGTGACAGTTCATCAGAAAATGAGATTCTGGGCATGTGATTTAtgtgataaaagttttggtGAAAAAGCTCAACTTCAAAGACACCACAAAATCCATTTTAAGCCTGCATTTCAAGAACCTGACCCTGCACAAGTCACTGACGATCAGGAAGTTTTTGACGATAAGAAAAAGCGGATGCGATGTGGAATTTGCAAGAAAGTCGTAAACTCAAAAGCGGCTTTAAAGAGGCACAAGCTTCTGAttcacgaaagaaaaagaaatctcttgtGTGATTTTTGCCCAAGAATGTTCggagagaaatcaaatcttcGCAGACACATCGAGAAGTCCCATAATGATGAGATGAGAATAGATCGCAATGAGCCTGAAGCACCAAGAACTCGCCAATCGGATGCCAAAGATTGTTTTCCTTGTAATTCTTGCgagaaagttctttcaacTAAATGGGGATTAACAGCGCATGAAGAAACATGTCTAATAAATCAGCAAAAGAAGCTTAACGAAAGTCTACCAGAAAATGTTCCAACAAACGCAGTTGATACAATGGAACAAGTTTTCTTAGTGTCAGAAGATATTGAATCCATAGAGATCAAACAAGAGCCCCCTTTTCTAGATGAATATGGATCAGACGAATCagtttcaaagtttgttCCTGAAGTGTTGCAATCTGATTCAGGGGAACCAATTGATTTACTGATTAAGGACGAACCAGAAGAGACAGTGAATGAAGAGTTTGAGTTGATATTAAAACCTGATAAGCCAATGGATGAGCTTAAGGAAGAAACAATAGATAATTCGGGTGCTGACGAAATTTTCCCTGATAGCGACAATgacgaaaaaaatgaaaatcaagaTTTGATGACTAATCCTGAAGTACTTCTTGATGAAAGTGAACCAGAAGTTCAACTGTTAAAACGATACAAGTGCAAACTTTGCCCTCGGACGTTTAAAGCTAAAAGATATTTCCAATCCCATTACAGAACCGTACatggaaaatcaaataaagctttgaagTGCACCGTTGATTCTTGCGACGAGACTTTTGTGTATCGAGCGCAACGTCTTCGTCATCTAAGACTCAAGCATCCAGAGGTTTATGAAGAAACAGATGAAGAAACagaagaacaaaatattgaattgcAATCTCAAATTGTTTGCGACTTGTGCGAAATGTCATTTCCTACTCAAGATCTTCTCGATAGCCATCTCGATCGACAGCACTTAGACGATGCCGATAGTAACGTTGAAGCTGACGAAACagaacaaaatattatttgtgAGGTATGTGTGCCtaacaaattattcaagaaGGTTCGATACTTCCTCCTACATAAtcaagcttttcattcaaacgAGTCATTCGCCTGTTCGCAATGCCcgagaactttttctttcaaatccTCATTGGGACGCCATATTAAAGGAGTTCATGAAGATATAAGTAGGTTCGCTTGTGAAGAGTCAGGatgcgaaaagaaattccgaAGCAGCTATGAACTAAAGCAACATCAAATTGGAACTCATAACAAGGGAGACAAAATTCTACGAACGTGTCAAATttgcaataaagtttttaagaaaGTCAAGTACCTTCAAATTCACGAAGCAAGCGTTCACAACACAGAACCTCAATTCACATGTCCAATTTGTAACAgaagtttctcatttcaacGCTCGATGGATCGACATATTCGTGCAATTCACGAAGATAGACGAGATTTCAACTGCCCAGCTGAGGGATGTGATAAAGCATTTCGATCAAAGTACGACGTCAACGAGCACTACAATAACATTCACGCTTTAGTTAAAAAGACGAGACCTGTCGAAGAAGTGACTTGCGATGTTTGTGAAAAGATTTGCTCTTCTCGAAAGGTGCTGTACTCACATAAAAAGATGGTACACGAAGGAGTCAAGTGGGGAATGAATTTCGAATGCAAATTATgcaaggaaaagtttgaatcaAAGTACAAAAAGTCAAAACATTGGGGCCAAGttcatcggaatggaaaaatcaaaatgcgAACATGTCATTTGTGCAATAGtgactttcaattcttcgaAGAATACAAATTGCATATTGAAACGCATGTCGGGTGTTTCATCTGCCTCATTTGTGGTTGCAACTTCCCAGACGAATCGTCGCTATTTATTCACAGTGAGTCTCATCGAAAAATAGAAGAAGTTCTCAGACAATTTGTCTGTGATGTTTGCTCTCATCGACTATCAACAAAAGCTCAGCTGTTAATTCACATGCGTAAACATTTCCCGGGCGATTACTACATGTGTGACatCTGTGGAAAATCGTATAAGTTCATTGCGCCTTTCCTACATCATAAAATGGGCCATGAGAATCGTTTCGACTTTGCTTGTCGCTTTTGCGAAAAAAAGTTCCGAGTCGCTCGAGATCGAATGCTTCACGAGCGAGTTCATACGAAAGaaCGACCGTACAAATGTGAGCATTGTCAGAAAGCTTTCGCCCACAAAGCAAATTATGTCAGTCATCTGAAAACCCATGAAGCGAAAGCGTACGATTGCAAGCTTTGCGGATTACAAAACGCAACCGCAGCAAAGCTTCGTCAACATGAAGACAGCATACATCCCGAGGAACGACCGTTTCGGTGTTGTTACTGCAACaagagctttaaagtttcgcACTCACTTGAAGCGCATAAACAAAAGTGCTCAGAATCTCTTCTAAATCTCGATGTGAAGCCatcaaagttctttaattACTATCCGATAAGTTAA
- Protein Sequence
- MYQSSFVAAEQCSAENVLQIVCEICGNSVPRIDYDRHLRTHKEKRVEICKICFKAFTNISNFKYHMAHHGTERPWLCTECPKNYKTKIDLIQHQRVHDKARDPFHCSICGQFFKTRSNFNTHLRTHSVKGPQKCVECDKIFVNLRSHIQMVHQKIRTHICNLCEKAFGKKSGLDRHIVTVHQKMRFWACDLCDKSFGEKAQLQRHHKIHFKPAFQEPDPAQVTDDQEVFDDKKKRMRCGICKKVVNSKAALKRHKLLIHERKRNLLCDFCPRMFGEKSNLRRHIEKSHNDEMRIDRNEPEAPRTRQSDAKDCFPCNSCEKVLSTKWGLTAHEETCLINQQKKLNESLPENVPTNAVDTMEQVFLVSEDIESIEIKQEPPFLDEYGSDESVSKFVPEVLQSDSGEPIDLLIKDEPEETVNEEFELILKPDKPMDELKEETIDNSGADEIFPDSDNDEKNENQDLMTNPEVLLDESEPEVQLLKRYKCKLCPRTFKAKRYFQSHYRTVHGKSNKALKCTVDSCDETFVYRAQRLRHLRLKHPEVYEETDEETEEQNIELQSQIVCDLCEMSFPTQDLLDSHLDRQHLDDADSNVEADETEQNIICEVCVPNKLFKKVRYFLLHNQAFHSNESFACSQCPRTFSFKSSLGRHIKGVHEDISRFACEESGCEKKFRSSYELKQHQIGTHNKGDKILRTCQICNKVFKKVKYLQIHEASVHNTEPQFTCPICNRSFSFQRSMDRHIRAIHEDRRDFNCPAEGCDKAFRSKYDVNEHYNNIHALVKKTRPVEEVTCDVCEKICSSRKVLYSHKKMVHEGVKWGMNFECKLCKEKFESKYKKSKHWGQVHRNGKIKMRTCHLCNSDFQFFEEYKLHIETHVGCFICLICGCNFPDESSLFIHSESHRKIEEVLRQFVCDVCSHRLSTKAQLLIHMRKHFPGDYYMCDICGKSYKFIAPFLHHKMGHENRFDFACRFCEKKFRVARDRMLHERVHTKERPYKCEHCQKAFAHKANYVSHLKTHEAKAYDCKLCGLQNATAAKLRQHEDSIHPEERPFRCCYCNKSFKVSHSLEAHKQKCSESLLNLDVKPSKFFNYYPIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -