Sate012320.1
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- -
- Assembly
- GCA_033063855.1
- Location
- CP093831.1:14659364-14660887[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.5e-06 0.001 18.7 0.0 1 41 239 280 239 283 0.91 2 3 0.00019 0.13 11.9 0.0 7 35 293 320 292 329 0.86 3 3 7.4e-09 5.1e-06 26.0 0.0 3 38 348 382 346 389 0.88
Sequence Information
- Coding Sequence
- ATGTCGTTTGTTATCAATACGACTGTTGATAAGAATCAGGAGTTACTCGATGCGTACAAGGAACTGTACGAAAACTCAGATTCGCAGAAGGATGTCTATTTAATCagtaaaaacaatttcgtcGCAGTCGATAGCTTTGCTCTCGCTTTAAGTAGCGATTTCTTCAAAACTTTGTTGAGCGAAAACCAACGAGATACCGTCAATATTTTGATTCCCGATGTCGAGCCCGAAATTCtcagaaaagttgttgaataTATTTATTGCGGAgcaattgaaatggaaagcAAATACATGGCCGACTTCATCGAAGCTTGCAACTTGCTAAACCTCAAGGCGACCATTAcatgtgaaaaaaaattggtaTTCGACAGTCAAAAGTCAGCGACGTTCACTTCTAGAGCAACTTCAACTCCGATGACCGCTGTGTCTAAGCAAGCAAACCTTGATTCTCTCATTGCTGATCTCGAACAAGACGAGCAAATCGAATATCGTACAAAACATGAGAGCTCTGAGGAGCCTGGACAAATTGTCGAGGTTTATGAAATCGAGGAAGGAGAAATAACTTACGAGGAAGAGGAAATAAGCGAACATAATTACGAATTAATGAATGTTGtctctgaaattaaaagcgaaGCTCCAGctgagaaaaaatttaaaaaggaaaaaggcATAACTGTAGTGAAGACGTCGCCTTCTGAACCAAGGAAGCCTGTTGATGAAGATACAATGAACAAAGCAATTGATGAGATTATGTCAAACAGCAACAGctTTCGAGTAATCAGcgagaaatatcaaattccTAAAACTCTCTTGTGGCGTCGAGCTAAGAAAATGGGCTACGTCAAAGGAGAAAAGCTGAAAGATTTATCTCGAGTTGAGGCGATTGAGGAAATTAAGCGAGGCGAAAGTTTGATCAGTCTCAGCAAGAAATACAACATTCCAATCTCAACaCTTCAtcgtgaaaaattgaagctCTACGAGAGAGGTCAGCTTCCTGATTTCGTCAACTTAAAGAATCGCTCGCGCGGAGCAGATTACGACGATCGCCTTCGCGTTGCCATTTCGGAAATTCTTAATGGAAAGAgccaaaatgaaattgccaAGAAGTATAACATCCCGAAGACAACGATATGGAGaatcataaagaaaatgagtCCTGATTACAAATCAGATAACACAGTCGTAACACCAGAATCCTCAATTGTCGAACATCTCATGCAAATGAGTAAGAAGCGAACGGTCAAAGAAGAGCCCATCAAACAAGAACCAGTAGAGATTTTCAACCAGATACTGACTTAA
- Protein Sequence
- MSFVINTTVDKNQELLDAYKELYENSDSQKDVYLISKNNFVAVDSFALALSSDFFKTLLSENQRDTVNILIPDVEPEILRKVVEYIYCGAIEMESKYMADFIEACNLLNLKATITCEKKLVFDSQKSATFTSRATSTPMTAVSKQANLDSLIADLEQDEQIEYRTKHESSEEPGQIVEVYEIEEGEITYEEEEISEHNYELMNVVSEIKSEAPAEKKFKKEKGITVVKTSPSEPRKPVDEDTMNKAIDEIMSNSNSFRVISEKYQIPKTLLWRRAKKMGYVKGEKLKDLSRVEAIEEIKRGESLISLSKKYNIPISTLHREKLKLYERGQLPDFVNLKNRSRGADYDDRLRVAISEILNGKSQNEIAKKYNIPKTTIWRIIKKMSPDYKSDNTVVTPESSIVEHLMQMSKKRTVKEEPIKQEPVEIFNQILT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01352976;
- 90% Identity
- iTF_01352976;
- 80% Identity
- iTF_01352976;