Sate014824.1
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- -
- Assembly
- GCA_033063855.1
- Location
- CP093831.1:27414315-27416779[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 7.8e-14 5.5e-11 42.0 0.1 3 42 13 52 11 54 0.89 2 3 0.021 15 5.4 0.0 4 35 320 350 320 356 0.89 3 3 2.6e-05 0.018 14.7 0.0 1 39 466 504 466 509 0.91
Sequence Information
- Coding Sequence
- atgtcaaagaaacgcaaaaatttaaactatAGTTCAGAGCAACTGACAGCAGCCCTAGAAGCTGTTAGAAGCGGCCAAATGACATACTATAGAGcagcaaaagaatttaacATTCCAGCTCAAACATTAAGTAATAAAGTTAAAGGAAAAcatcagaaaaaaattggaaGCCAAACGAGATTGAGCGAAACTGAAGAGTCTGAAATTGTCAAGTGGATCGTCGAATGTGCTGAATGCGGAAAACCAGCAAAAAAACTAGCAGTTTTGAATGCGGCGACAGAAATTCTTCGACGAAAGAATGGAAAGCACGAAACTCTTTCTGCAAAATGGTATTATGGATTCTTACAACGTCACCCAGAGctggaaaaacaaaaaacatcaaaactaTCAAGAGAAAATGACGATTGCCAGAACGAAGTCTCAGTGAATCCTAAAAGTAACTGCAGACTTTGTCTTGAGCTGCTCGAGAATCAAAcagaaagtaaatttgtAATAGGAGATctcgagatgaaaataaacgaaattttcccttcgaaTGTTCTCCGATCGCCGACAGCTTCATTGAATTCTCTCTGCATTTCCTGCTACGCTCAAGTGGAAGACTTTTATCACTTCAGATCAACGATCATCCAAAAGCACTTGAACTGCGAACAATTTGAACTTTGCGAGATTAAAATGGAACAAATCGACTTCAATCCTGTCGTCAACATTTTGGcgattaaagaagaagatttaggAGAATACGAATGGAACGCTGATGACTGGAACAATGAATCTGATGCAGAAATCAACTATGAAAGTGATCAACGAGAAATTCCTCTACTGCCAAACGATTCTGATAACGCTTCAATTGAATCTGATCAAGGAGAATCAAAAATTCCTCAGTCGGAAAACGAtttcgaagaagatttcgaagaaattagaaaagaagaattgcAAATTCATCAATTACAAATCGATCTTGACAAAGCTTTAAAGGAAATCGACAAAGGATCTTCCATCACCGACGCAGCTTTAAAGTTCAACATTTCGGAATCacatttgaagaattttgtCGACAAATCGAGTTCTCCTCAAGAATTTGATcggaaaattgcaaattggATCATAACTTCTGGCGAAATGTGTGATCCAAAgacgaaacaaaatgttctcgATGCTGCAACTCATTTGTCAAATTTCGACTCATCCACGATCTCCAATGAATTCAATGACAACTGGTTCCGAAGCTTTCTAAAGAGAAATCCTGATGTGCTTCTTCCAAATGTATTGAAATTAGAATCAAACGCTGATGATACAACTGATGATCTTCCAGACGACAACGCTTCAGATAAATCAGAAAACGAAACTGATTGGATCGAGGAACAAGCTGTCAACGctggaaaaaaatcattcaccGAGGAAACGATGAAACttgctttgaaagaaattaaaaatggaGCCACTGCCTATAAAACTGGaaagaaatacaaaatatCTGAAACAACTTTAAGTTACAGACACAAATTTGgaaacaagagaagaaaatcaaagcaGCCACAAATTCCTCGCGCACTGGAGACGAGACTTGCCGATTGGATCGTTGCTTGTAATGAATTGGGCGACAAGAAGGAACATTCCAACATTTGTGAGATTGTTTCgcattttataaaaattcaGAAACGGAAGCCTCGTCCCTCAATTGTCAACACTTGGGTTGATCGCTTTCTAAGACGACATCCTGAGACTTTAATTGAACCTTCGAAgGAATTACCAAAGTCTGAGTGCGATTTGTGTGGatatcaacaaacaaaaaagatttttgtaaGAAACCACATCCTCGCTGTTCATGCCACGAAAAAGTTccaatttaaatgcaaaatcTGCGAAAAGTCTTTTGCACAAATCTATAATCTTAGAAACCATGTTCTTGAGAAACATCCTGCGCCTGGAAAAGCAAAGAACTTTGTTTGTGAAGTTTGTGCTAAAAGCTTctacacaaaaaaatgtctTCACACTCATTCTAAGCATcacaagaagaaggagaagaaatttcattgcgatTTTGAAGGATGCAACAGGAAATTTTTAAGACTGAAAGAACTCGAGGATCACAAACGCAATGATCACTTGggaataaaagatttcaattgtGATTTTCCTGGCTGCGACAAAGCTTACAGTAACAAACAAGGTCTGCAGCGACATCAAAAGGACTCGCACGAGGAACCATCGAAGTGTCCAGTCAACGATTGCAGTTTTCGTGTTAACCGCGATGCTTAcatgagaaatcatttaaagaGACACACAGATATTGATGATCAAGAGCTGCaggaatatttattgattgttaagaaaatgaaattgtcttATTGA
- Protein Sequence
- MSKKRKNLNYSSEQLTAALEAVRSGQMTYYRAAKEFNIPAQTLSNKVKGKHQKKIGSQTRLSETEESEIVKWIVECAECGKPAKKLAVLNAATEILRRKNGKHETLSAKWYYGFLQRHPELEKQKTSKLSRENDDCQNEVSVNPKSNCRLCLELLENQTESKFVIGDLEMKINEIFPSNVLRSPTASLNSLCISCYAQVEDFYHFRSTIIQKHLNCEQFELCEIKMEQIDFNPVVNILAIKEEDLGEYEWNADDWNNESDAEINYESDQREIPLLPNDSDNASIESDQGESKIPQSENDFEEDFEEIRKEELQIHQLQIDLDKALKEIDKGSSITDAALKFNISESHLKNFVDKSSSPQEFDRKIANWIITSGEMCDPKTKQNVLDAATHLSNFDSSTISNEFNDNWFRSFLKRNPDVLLPNVLKLESNADDTTDDLPDDNASDKSENETDWIEEQAVNAGKKSFTEETMKLALKEIKNGATAYKTGKKYKISETTLSYRHKFGNKRRKSKQPQIPRALETRLADWIVACNELGDKKEHSNICEIVSHFIKIQKRKPRPSIVNTWVDRFLRRHPETLIEPSKELPKSECDLCGYQQTKKIFVRNHILAVHATKKFQFKCKICEKSFAQIYNLRNHVLEKHPAPGKAKNFVCEVCAKSFYTKKCLHTHSKHHKKKEKKFHCDFEGCNRKFLRLKELEDHKRNDHLGIKDFNCDFPGCDKAYSNKQGLQRHQKDSHEEPSKCPVNDCSFRVNRDAYMRNHLKRHTDIDDQELQEYLLIVKKMKLSY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01353353;
- 90% Identity
- iTF_01353353;
- 80% Identity
- iTF_01353353;