Sate014840.1
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- -
- Assembly
- GCA_033063855.1
- Location
- CP093831.1:27480418-27484902[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1.3e-05 0.009 15.7 0.0 4 34 7 37 6 47 0.84 2 5 3.4e-12 2.4e-09 36.7 0.0 1 43 53 95 53 97 0.91 3 5 0.018 13 5.6 0.0 2 33 357 387 356 396 0.89 4 5 0.037 26 4.6 0.0 1 38 505 541 505 547 0.86 5 5 0.00023 0.16 11.7 0.0 4 39 932 966 930 972 0.84
Sequence Information
- Coding Sequence
- ATGAATTACAGTGTAAAAGAACTGAAAACAGCTCTAGAAGCTGTCAGAAGTGGTGAAATGACATTGATTCAATCATCTCGTAAGTTCAAAATCCCTGTGCGAATATTGaaagacaaaataaaaggacaaacaggaaaaaaatatttcgcaaatTATACTGAGAAGGATATGCAAGCTGCAATCGATGAAGTCGCTTCTAATAAAACTAGTTTCGGTAGAGCAGCTCGAAAGTATGGCGTTCCTAAGCAAACTCTTTTTCACCGCTTCAAAGGAATTAGCACAGCGCAACATGgaagaattcaaaacatttcagaagaagctgaaaagaaaattgtggaGTGGCTGCAATTTCACGCTAAAAAAGGCGATCCACGAACACGTAAACAACTAATGGAAACTGCTGAAGAATATGCATCGACTTATGAGTCTTGCCAGCCTTTTAAAAATGGCTCTCCGTCTGAAGGTTGGGTCAAGGGATTCTTAAATCGCAACCCGAATGCGTCAATCAAAACTTCATCAAGAGATTCAGCGAACATAACTCCTCAAAATAGCTGCAGGCTCTGTCTGGAGTTGTTTGAGAATGTAACAGAGAGAAAATCAGTAAGAGAAGatctcgagaagaaaataaacgaaattttcccttcgaaTgtTCTCCGATTGCCAACAGCTTCAACAAATTCTCTTTGCATTTCCTGCTACGCCCAAGTAAATGACTTTCACCACTTCAGATCAACGATCATCAGAAAGCACTCGAACTGcgaacaatttgaaatttgcgAGATTAAAATGgaacaaatcgatttcaatccTGTCGTCAACATTTTGGcgattaaagaagaagatttaggAGATTACGAATGGAACGCTGATGACTGGAACAATGAAGCTGATGCAGAAACCAACACTGAATGTGATCAAAGAGAAGTAGAAATTCCTCAACTGCCAAACAATTCTGATAACGCTTCGATAGGATCTGATCACGAAGAATCAATAATTCCTCAGtcggaaaatgatttcgaggaagttttagaagaaattaaaaaaggaaaattgcaaattaatCAACTAGAAAATAATCTtgacaaagctttgaaagaaattgacaAAGGATCTTCGATCACTGACGCAGCTTTAAAGTTCAACATTTCGGAATCACATTTGAAGGATTTTGCCGACAGATCAACTTCTCCTCAAGAATTTGATcggaaaattgcaaattggATCATAACTTCTGGCGAAATGTGCGATCCAAAgacgaaacaaaatgttctcgATGCTGCAACTCATTTATACAAACTCGACACGTCCACGAtctcaaatgaattcaatgacAATTGGTTCAGAAGTTTTCTAAAGAGAAATCCTGATGTGTTACTTCCAAATGTATTGATACTAGAATCAAATGCTGATGATACAACTGAGGATCTTCCAGACGATAAAGCTGCCGAAAATTCGCAGAAAGAATATGATTGGATCAAGAAGCAAGCTGCGAACGCTGGAAATAAATCATATACCGAGGAAACATTGAAACTTGCTCTggaggaaatgaaaaatggaGCCACTGCCTAtaagattgaaaagaaatacaaaattgGCAGAAGTACTTTGATTCGCAGACTAAAATCTGGTAGCAAAGGAAGAAAGTTTGGCCAGCCACTTATTTCTCACGCATTGGAGATGAGACTTGCCGATTGGATCGTTGCTTGTAATGAATTGGGCGACACGAAGAATCATTCCAACATTTGTGAGATTGTTTCGCATTTTATGAAAGTTCAGAAACGAAAGCACTGTCCCGCAAGTGTCAACATTTGGGTTGATCGCTTCTTAAGGCGACATCCTGAGACGTTAATTGAACCTTCGAAggagttagaaaagtttcagtGCGATGTGTGTGGATACCAATACTCGAATAAGTTTGTTGTTCTCCGATCGCCAACAGCTTCAACAAATTCTCTCTGCAGTTCCTGCTATTTCCAAGTAAACGATTTCCATCACTTCAGATCAACGATCATCagaaaacatgaaagttctttgaaCTGCGAACAATTTGAACTTTGCGAGATTAAAATGgaacaaatcgatttcaatccTGTCGTCAACATTTTGgcaattaaagaagaagatttaggAGATTACGAATGGAATGCTGATGACTGgaacaatgaagaaaatacAGACAACAACACTGAATGTGATCAACGAGAATTAGAAATTCCTCAATCACCAAACGATTTCGACAACGCTTggatggaaattgaaaaaggaGAGTTAGAAAGTCCTCAATCGGAAAAGGTTTTCGAGGAAGTTTTGGAAGAAATCGAAACATCACAATTGGAAATTCCTCAATTGCGAAACGTTCTTGACAAATTTTTGCGAGCAATCGACAAGGGATCTTCCATCACCGACgcagctttaaagtttagaATTTCGGAATCACATTTGAAGGATTTTGGCGACAGTTCGGCTCCTCATGAATTTGATcgaaaaattgcaaattggATCATAACTTCTGGTGAATTGTGTGATCCAAAgacgaaacaaaatgttctcgACGCTGCAACTCATTTATCCAAACTCGACTCGTCCACGATCTCTCATGAATTCAATGACAGTTGGTTCCGAAGTTTTCTAAAGAGAAATCCTGATGTGCTTCTGCCAAAAGTCTTGATATTAGAATCAAACGCCGAAACTGATATTTATCCTGACGAAATGCTTTCAGATAATTCAgacaatgaaattgattggaTTAGGAAACAATCCCGAAATGCagaaaaaagagatttataCGACAAAACGATGAAACTTGCATTGGAGGAAGTCAAAAACGGAGCCGCTGTCATCCCGACTGCTAATAAATACAAAATTTCTAACTCCACTCTCTACAACAGAATAAGAAACGGTCgcaaaatcaaacaaaagtcGAAACAGCCTCAAATTTCTCGCTTATTGGAGATGAGATTTGTCGATTGGATAATTCTTTGTAATGAATTGGGTGACACGAAAAATCATTCCGACATTTGCAGAATTGTTAAGcattttctaaaaattcGAAAACGAAATATCCAACACGCAAAAGTTGCAGAATCGGTTGATCGCTTCTTAAGACGACATCCTGAGACTTTAATTGAACCTTCGAAGTAA
- Protein Sequence
- MNYSVKELKTALEAVRSGEMTLIQSSRKFKIPVRILKDKIKGQTGKKYFANYTEKDMQAAIDEVASNKTSFGRAARKYGVPKQTLFHRFKGISTAQHGRIQNISEEAEKKIVEWLQFHAKKGDPRTRKQLMETAEEYASTYESCQPFKNGSPSEGWVKGFLNRNPNASIKTSSRDSANITPQNSCRLCLELFENVTERKSVREDLEKKINEIFPSNVLRLPTASTNSLCISCYAQVNDFHHFRSTIIRKHSNCEQFEICEIKMEQIDFNPVVNILAIKEEDLGDYEWNADDWNNEADAETNTECDQREVEIPQLPNNSDNASIGSDHEESIIPQSENDFEEVLEEIKKGKLQINQLENNLDKALKEIDKGSSITDAALKFNISESHLKDFADRSTSPQEFDRKIANWIITSGEMCDPKTKQNVLDAATHLYKLDTSTISNEFNDNWFRSFLKRNPDVLLPNVLILESNADDTTEDLPDDKAAENSQKEYDWIKKQAANAGNKSYTEETLKLALEEMKNGATAYKIEKKYKIGRSTLIRRLKSGSKGRKFGQPLISHALEMRLADWIVACNELGDTKNHSNICEIVSHFMKVQKRKHCPASVNIWVDRFLRRHPETLIEPSKELEKFQCDVCGYQYSNKFVVLRSPTASTNSLCSSCYFQVNDFHHFRSTIIRKHESSLNCEQFELCEIKMEQIDFNPVVNILAIKEEDLGDYEWNADDWNNEENTDNNTECDQRELEIPQSPNDFDNAWMEIEKGELESPQSEKVFEEVLEEIETSQLEIPQLRNVLDKFLRAIDKGSSITDAALKFRISESHLKDFGDSSAPHEFDRKIANWIITSGELCDPKTKQNVLDAATHLSKLDSSTISHEFNDSWFRSFLKRNPDVLLPKVLILESNAETDIYPDEMLSDNSDNEIDWIRKQSRNAEKRDLYDKTMKLALEEVKNGAAVIPTANKYKISNSTLYNRIRNGRKIKQKSKQPQISRLLEMRFVDWIILCNELGDTKNHSDICRIVKHFLKIRKRNIQHAKVAESVDRFLRRHPETLIEPSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -