Sate006262.1
Basic Information
- Insect
- Smittia aterrima
- Gene Symbol
- bab2
- Assembly
- GCA_033063855.1
- Location
- CP093830.1:6782298-6798794[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.77 5.4e+02 0.4 0.0 19 35 26 41 23 50 0.76 2 5 4.1e-12 2.8e-09 36.5 0.0 1 39 620 659 620 663 0.91 3 5 2e-11 1.4e-08 34.3 0.0 2 39 675 712 674 715 0.94 4 5 3.5e-16 2.4e-13 49.5 0.0 3 45 731 774 729 774 0.97 5 5 4.4e-18 3.1e-15 55.6 0.0 1 41 781 822 781 824 0.97
Sequence Information
- Coding Sequence
- ATGATGTCGAGTCAAAGCGAATCGCCAAAGAAACATGTTTTGTATCCTTCGCCGAGTGTGGCAACCAGTAAATCACAGACGAAGGCCAGTCAGCATAACATACCGAGAGTCACATTACCAAAGGTACATGCCAGTCAAATACAAGCGTCAAGTCATCATCAATATTATTCATTAAGGTGGAATAATTATCAAAACAATCTAACGGACATGTTTCATGAATTACTCAACGCGGAGAGGTTTGTCGACGTAACATTATCATGTGACAACAATACGCTGAAATGTCACAAAGTCGTTCTATCAGCATGTTCATCGTTCTTTGAGAAACTTCTCCTCGACAACCCATGCAAACATcccatcatcatcatgcCACCAGAAATCGCATTTGCCGACCTTCAGTTTATCATCGAATTCGTTTACAAAGGTGAAATTGATGTCTCCGAAGCTGAGTTGCAAAGCTTGATAAGAACTGCTgagcaattgaaaatcaaaggATTGTGCGAGATTAACGATCACACAAACGCAGTCGAGTCCGATACTGAGGTCATTTATCCGCCGCACAAGAAGATTCGCGCATCGAGAAACTACGAAAACAACAACACTCTTCctaataacaataaaaacttatcAACTCGCGACGAATTGCAATCAACATCAGCGAAATCTGCTGACAAAGATGCACATCCGTCAATAACCGCTCACGAGGAAAACAAGCGCAAGTCTAAATCACCGTTAAAGGaatcgaaaagttcaaaCAGCACACAGCAGGCAAAGTCTAACATGGCAAGTCTCGAGATGGGAATGAATTATCAGAATGGGAATGTGGTCATGGGCGTGCCACTCACTTACATGGACTTCGCTCCGGAACCACCAGCGCCAACTGCAACTCCCGTCATCACAACGGAAATGAACTGCAATCCAAGCCAGGACACAAAAGATTTATCACACTCAACGCCGATTAACGGTACCGAGAATGCcagaataattaaattcgagACATTACGACCGCTCGATCCGACTGATACGATTGTCGAGTTTGATAATTCCATTCAACATTCCATTTGTCGTCTAGATCAAGTGGCTGCTTCACACCCGTCAGTGTCGCAAAGCAGCCCGATTATCCATCATACGCATCACTCTCCGGCTCAAGTTCAGATTATTACAACTTGTTCTTCGCCTGTGACGTCGCTCAGCGAGTTGGGTATTAAAACATCTTCGATTATAACGACAGCTCCTCACATTCATCATGAAGAGagttatcatcatcatcatcagcaacttcaacaacagcagcagcaacaacaacagcagcagcaacagcaacaCCAGCAACTTCAACATGAACAACAGAGGCAGCATCATCAGCATGAACAACAGCAAAGGCAgggaaatcaattgaaagatttttcaagcttcgaaagagaaattcatcattctcaacagcagcaacatcACCAAAATCTGTctcaacagcaacagcagcagcaacaacaacaaatcaCAATTCAACAGCAATCGCGTCCCATCATCCAACATCATCAGATAATCGAGACGATAAAGACTGAAGACGTCGATATAAAGCCATCAATACACGAGCTAATGTCGGTAGGGAATATGGAAGTTGATGGAGGACAGCAATCGAATAACGGCGAGCAAAATATTCATGGCATTGTTGTGACACCGGAAATCGGAAATATGATGACAACGCCCACGCAAATTGAAATGTACAACTCCGATACGAGCGACGATGCCAAAATGCAAACAGATCAAAATGGTTCTGGACAGTTGCAGTACATTACGTTGGGCAACAATGCGACGCCAAACAGCGATGGAAAGAACAACAGTGGTCCAAAGACTTGGACGCCAAATGATATGGAAGCTGCACTTGAAGCCTTGCGATCACATAACATGAGCTTGACGAAGGCATCAGCGACTTATGGGATCCCGTCAACAACTTTATGGCAGCGTGCACATCGATTGGGCATTGACACGCCAAAAAAAGAGGGTCCCACGAAGACTTGGAACGAAGACTCACTCAACAGCGCATTGGATGCACTCCGCACGGGAACCATTTCCGCTAATAAAGCGTCAAAGGCCTTTGGCATTCCGTCTTCCACACTTTACAAGATTGCACGTCGCGAGGGCATTAGACTGGCAGCTCCTTTCAATGCAGCACCAACAACTTGGTCAGCTGAAGATTTAGAAAAAGCCTTAGAAGCAATTCGGGCTGGACAAGCTTCAGTTCAGAAAGCAAGCACTGAGTTCGGAATTCCAACAGgGACGCTTTATGGTCGTTGCAAACGAGAGGGAATCGAGTTATCTCGATCGAATCCAACGCCGTGGTCAGAAGATGCGATGATGGAAGCTCTAGATGCAGTGCGtGTGGGACAAATGTCGATAAATCAGGCAGCGATTCACTTCAACCTGCCCTATAGTTCGCTTTATGGTCGATTCAAGCGAGGCAAATACGGTGACCCTCCAAACGGCAATGCTAACAACGATTCATCACACAACACGACTGAACACAGCCCCGACAACTCGATGAGCTACGGACATCATACATTAATCGCAGACTCGAACGCCACTACGCAACTTCAAGACAACATAATCTATCAACAACACTATTCGCCGTCACCGCAAATAATTCATCAACAACCGCCCCAACAAATCTATCATCATCAGCAGATTATTTATCAGAATCATCCACAGCCACCGCAAATTCTTCAGATTCATCAGATAAAGAAGGAGACTAGTTGA
- Protein Sequence
- MMSSQSESPKKHVLYPSPSVATSKSQTKASQHNIPRVTLPKVHASQIQASSHHQYYSLRWNNYQNNLTDMFHELLNAERFVDVTLSCDNNTLKCHKVVLSACSSFFEKLLLDNPCKHPIIIMPPEIAFADLQFIIEFVYKGEIDVSEAELQSLIRTAEQLKIKGLCEINDHTNAVESDTEVIYPPHKKIRASRNYENNNTLPNNNKNLSTRDELQSTSAKSADKDAHPSITAHEENKRKSKSPLKESKSSNSTQQAKSNMASLEMGMNYQNGNVVMGVPLTYMDFAPEPPAPTATPVITTEMNCNPSQDTKDLSHSTPINGTENARIIKFETLRPLDPTDTIVEFDNSIQHSICRLDQVAASHPSVSQSSPIIHHTHHSPAQVQIITTCSSPVTSLSELGIKTSSIITTAPHIHHEESYHHHHQQLQQQQQQQQQQQQQQHQQLQHEQQRQHHQHEQQQRQGNQLKDFSSFEREIHHSQQQQHHQNLSQQQQQQQQQQITIQQQSRPIIQHHQIIETIKTEDVDIKPSIHELMSVGNMEVDGGQQSNNGEQNIHGIVVTPEIGNMMTTPTQIEMYNSDTSDDAKMQTDQNGSGQLQYITLGNNATPNSDGKNNSGPKTWTPNDMEAALEALRSHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKTWNEDSLNSALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWSAEDLEKALEAIRAGQASVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMEALDAVRVGQMSINQAAIHFNLPYSSLYGRFKRGKYGDPPNGNANNDSSHNTTEHSPDNSMSYGHHTLIADSNATTQLQDNIIYQQHYSPSPQIIHQQPPQQIYHHQQIIYQNHPQPPQILQIHQIKKETS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01352824;
- 90% Identity
- iTF_01352824;
- 80% Identity
- iTF_01352824;