Sory003705.1
Basic Information
- Insect
- Sitophilus oryzae
- Gene Symbol
- stc
- Assembly
- GCA_002938485.2
- Location
- NW:3419598-3434733[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.8 1.3e+04 -4.0 1.6 15 19 313 317 312 317 0.81 2 15 0.95 6.8e+03 -3.1 0.2 4 10 346 352 346 352 0.88 3 15 3.1e-06 0.022 14.4 14.1 3 18 360 375 359 376 0.93 4 15 7.9e-07 0.0056 16.4 10.1 1 19 412 430 412 430 0.98 5 15 0.36 2.6e+03 -1.7 1.2 5 10 459 464 459 464 0.94 6 15 6.8e-08 0.00049 19.8 13.0 1 18 470 487 470 488 0.97 7 15 2 1.4e+04 -6.3 3.1 6 10 518 522 516 522 0.59 8 15 3.5e-07 0.0025 17.5 17.1 1 19 528 545 528 545 0.99 9 15 0.7 5e+03 -2.7 2.1 5 10 574 579 574 579 0.95 10 15 0.002 14 5.5 9.6 1 11 585 595 585 596 0.96 11 15 1.2e-08 8.5e-05 22.2 11.1 1 18 612 629 612 630 0.98 12 15 0.68 4.9e+03 -2.6 0.8 5 10 658 663 658 663 0.89 13 15 0.0018 13 5.7 14.1 1 18 669 685 669 686 0.87 14 15 0.082 5.8e+02 0.3 20.8 1 19 722 741 712 744 0.87 15 15 0.0031 22 4.9 15.6 1 18 751 769 751 770 0.93
Sequence Information
- Coding Sequence
- ATGTCAGAGTCTTCTTCAAACGAGGGAACACGTTCTATTGTGCCAAACAGTTCTCAGCCTAGTTCGTCTGTGTTAGTATCAAATTTACAGCCTACAGCACCAGAATACATTCCTCTAAACAGTGTTACTAATAATGGTGCAATACGTAAGACATTTCCCAGACAAAATAGGTATTTTAATAATGCAAGGACTAACAAATTTCGACCTGACGATCAGAACAAACATAAATCAATAGCCTCGAGGAACAAGGACTATTTTAATGGAAACGGTACTTCATCCAGACATCACGAAGAAAGGAATGATGGAAACGGTCAttataaatcaaataattattacGGTAGTGCTAGTGGTCCATCTAGAAAACCCGATGAAAGGAACGATAGGAAGTCacattataaacataattattatGAAAATAATGGATATTATGAAAAGCCCAAgagaaataatacaagttatGAGGTAGAAGATaataaaaatcattattatgaTAGTAACAAAGAGAGATATGCTGGCAATGTTGATAGTAGAGAGAAAAATTCTTCGTACAGAAGAAGAAATTATAAGGACAGGGATAACTACAGGGAGCCGAATTTTGGGAAGAGATATAGTTTAATAAGGGGAGAttcaaaacataaacaatttcCTAGGAATAGGAACAATGGATTTCATGAAAATCATAATGAAAgtgatgtaaataaaaaagaattgccACTGCCAATAACAATTAGGGATAATGaaaatctaGAAGGTCAAAGGGAAAGATTAGTGGATATGATTGATAGACATGCACTGGAATGTTTAGTTTGCTGCGATAAAATAAGAAATCAACATCAAATTTGGACTTGCGAACAATGCTATCACATTGTACATTTAAGTTGTATAAGTGCGTGGGCAGAATCATCCCAGACCGCAGAGACGAAAGGACAATGGCGTTGCCCCGCGTGCCAAAAAACATACAAAGAAATACCACAAGATTACCAGTGTTTTTGCGGCAAAATGGTCAATCCCAAATTCGATCCGAACGTAATTGCGCACGGTTGCGGCGATGTATGCctaaaaaaaggcaaaaattgCGAACACAAGTGCAACATTTTGTGCCACCCTGGTCCCTGTCCCGAATGCAATGTCATGGCCCCGAAACCGTGTGGTTGCGGCAACACCGAACAGATCGTGAAATGCAGCTCGGAAACTAAATTCGTCTGCGACGGAACCTGCAATAAACCGCTGGATTGTGGCGTTCACGATTGCGAGAAGAAATGTCACGTCGATGATTGCTTACCCTGTCAAAAAGTTCTCCTACAGGAGTGTTTTTGTGGGAAAACAGGAAGAAAGGTGCGGTGCAACGCGGAGGATAGAGGAAGGTTGACTTTTACCTGTGAAAATCCATGTGGGAAATTGCTGTCTTGCTCGAATCACAAATGCAAGAAACAGTGCCATTCGGGTGCTTGCAATCCATGCGATATGGACGTGGATGCTGTTCAGTATTGCTGGTGTGGTAAAACTCCGTTGGAAGTTCAAAGGAAGTCTTGTTTGGATCCTATTCCTTGCTGTGATCAGatttgtTATAAGTTATTAAAATGCGGACATGATTGTAAAGAGAAATGTCACGAAGGGGAATGTCCGACTTGTCCGTTAAAAAAAGTGGTTCGGTGTCGTTGCGGAAGTCTGACTAAAGAGGTCACTTGTGAGGAATTCATAAATATGTCCGACGATATGACGTGCGAAAGAAAATGTACAAAGAAACGCCTGTGCGGCAAGCACAAATGCAACCAGAAGTGCTGCATCGAGATCGAGCACGTGTGCCTGTTGCCCTGCAACCGTCCGCTGACGTGCGGGTTGCATAGATGTGACATGACGTGCCATCCGGGCCGATGCCGGCCCTGCATGGAGACCAGCTTCGAGGAGTTGTTTTGCGAGTGCGGCGCGAGCGTGACGTACCCGCCCGTCGCCTGCGGCACGAAACCGCCCAAATGCGACAGGCCCTGCTTGAAAGCGAGGGATTGCGGCCATCCGGCCAATCACGAGTGTCATCCGGGGCCCTGTCAACCGTGTTTCGTGCTGACGAAAAAGTGGTGTTTCGGTAAGCACGAAGAACGGGGAGCTATCCCTTGCCACCAGGACTCCTTCAGCTGCGGCCTGCCCTGCGGCAAGCCCATGCCCTGTCAACGTCACAAATGCGTCAAGCCCTGTCACGAGGACGAATGTCCGCTGCCTTGTACCCAACCCTGTACGGTGCCGCGTACGTTGTGCGGCCATCCCTGTAACAAACCCTGTCACGGTGCTCCCTGTCCGGAGAGCAGTTGTAGGCAGACGGTTCCCGTCACGTGCCAGTGCGGATTGCTGAAAAGCAGCAAAATTTGCGTGGATTTGGTAGACGAGTACAGGAACATCGAGACTGCGCAGATCAAGGAGAAACTAGATAGGGGCGGTGATATTTCCGAAATTATAAGGCCTAGAGTGTCGGTGCTGAAAGTaCTGGATTGCAACGAAGAATGCCGAATCTACGAAAGAAACCTACGCCTCGCGATCGGTCTGCAAATCCAAAACCCGGATTTGTCCCAAAAATTAACTCCCCGCTACCCCGACTTTTTGAAACAGTGGGCCAAGAAAGACCCGAAATTCTGCCAAAGGATCCACGACAAACTGACGGAATTAGTCCAATTGGCCAAGCAGAGCAAGCAAAAAAGCCGGTCGCACTCGTTCGAATCGATGAACCGCGATAAGAGACAGTTCATTCACGAGTACTGCCAGTACTTCGGGGTGGAGAGCGAGGCGTACGACCGGGAACCGAACCGAAACGTGGTGGCCACGGCCGTCAAAGACAGATCGTGGTTGCCGGGCGTGGGTCTGTTGGAGGTCGTGCAGAGGGAGAATGGGCAGAGGAAGGTGCCCGGTCCTGTGCTGGGTTATGGCGGTGCCGGTCAGTCGGAAAAAGTGTCGCTGAATGTGCTGAACCGGGTACAAAAGTGA
- Protein Sequence
- MSESSSNEGTRSIVPNSSQPSSSVLVSNLQPTAPEYIPLNSVTNNGAIRKTFPRQNRYFNNARTNKFRPDDQNKHKSIASRNKDYFNGNGTSSRHHEERNDGNGHYKSNNYYGSASGPSRKPDERNDRKSHYKHNYYENNGYYEKPKRNNTSYEVEDNKNHYYDSNKERYAGNVDSREKNSSYRRRNYKDRDNYREPNFGKRYSLIRGDSKHKQFPRNRNNGFHENHNESDVNKKELPLPITIRDNENLEGQRERLVDMIDRHALECLVCCDKIRNQHQIWTCEQCYHIVHLSCISAWAESSQTAETKGQWRCPACQKTYKEIPQDYQCFCGKMVNPKFDPNVIAHGCGDVCLKKGKNCEHKCNILCHPGPCPECNVMAPKPCGCGNTEQIVKCSSETKFVCDGTCNKPLDCGVHDCEKKCHVDDCLPCQKVLLQECFCGKTGRKVRCNAEDRGRLTFTCENPCGKLLSCSNHKCKKQCHSGACNPCDMDVDAVQYCWCGKTPLEVQRKSCLDPIPCCDQICYKLLKCGHDCKEKCHEGECPTCPLKKVVRCRCGSLTKEVTCEEFINMSDDMTCERKCTKKRLCGKHKCNQKCCIEIEHVCLLPCNRPLTCGLHRCDMTCHPGRCRPCMETSFEELFCECGASVTYPPVACGTKPPKCDRPCLKARDCGHPANHECHPGPCQPCFVLTKKWCFGKHEERGAIPCHQDSFSCGLPCGKPMPCQRHKCVKPCHEDECPLPCTQPCTVPRTLCGHPCNKPCHGAPCPESSCRQTVPVTCQCGLLKSSKICVDLVDEYRNIETAQIKEKLDRGGDISEIIRPRVSVLKVLDCNEECRIYERNLRLAIGLQIQNPDLSQKLTPRYPDFLKQWAKKDPKFCQRIHDKLTELVQLAKQSKQKSRSHSFESMNRDKRQFIHEYCQYFGVESEAYDREPNRNVVATAVKDRSWLPGVGLLEVVQRENGQRKVPGPVLGYGGAGQSEKVSLNVLNRVQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -