Sory010534.1
Basic Information
- Insect
- Sitophilus oryzae
- Gene Symbol
- nfxl1
- Assembly
- GCA_002938485.2
- Location
- NW:584827-596413[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2 1.4e+04 -7.8 5.6 15 19 167 171 166 171 0.81 2 19 0.088 6.3e+02 0.2 0.4 4 10 202 208 201 208 0.96 3 19 3e-08 0.00022 20.9 17.0 1 19 216 233 216 233 0.99 4 19 2e-05 0.14 11.9 11.6 1 18 269 286 269 287 0.93 5 19 1.4 9.7e+03 -3.6 1.0 6 10 312 316 311 316 0.88 6 19 2.6e-09 1.9e-05 24.3 12.0 1 19 322 340 322 340 0.99 7 19 1.3 9.2e+03 -3.5 1.0 5 10 364 369 364 369 0.86 8 19 1.3e-06 0.0095 15.6 7.6 1 18 375 392 375 393 0.96 9 19 5.6e-05 0.4 10.4 17.1 1 18 427 444 427 445 0.94 10 19 1e-09 7.1e-06 25.6 13.8 1 19 454 472 454 472 0.98 11 19 1.2 8.7e+03 -3.4 1.8 5 10 500 505 500 505 0.91 12 19 0.00014 0.97 9.2 4.2 9 19 520 530 518 530 0.90 13 19 0.016 1.2e+02 2.6 5.0 1 12 540 550 540 550 0.89 14 19 2 1.4e+04 -4.8 4.6 16 19 577 580 575 583 0.55 15 19 0.00078 5.6 6.8 6.0 1 15 619 633 613 635 0.86 16 19 2 1.4e+04 -4.5 3.2 6 10 647 651 643 651 0.65 17 19 0.00036 2.6 7.9 16.3 2 19 660 676 659 676 0.91 18 19 3.5e-06 0.025 14.3 13.5 1 18 719 738 719 739 0.89 19 19 0.96 6.9e+03 -3.1 0.9 6 10 769 773 768 773 0.89
Sequence Information
- Coding Sequence
- ATGAGCAATAAAGCAAAACCAAATCCTTGGAAGCAAAATAACTCCAATCAGAAACAGAAAAAAGTGTTGAAGGATTCTACAAATGTTGGACCTGGTTTAAGTGCTACAGCTGAACACAAATTTAAAGAAGCTCAAGCTAAGTTACAGAATGCGGTTAAGAAACATATTAAGGATTACGAATCATCTTCTGATGAAGAAGATATAGATTCTACAGATCTAATTGAGAGTATTCTTAAACAGTACTCTAAGACTGGTGGGACAAATGACCAGATTCTTAAAACACAAACATTTATTGAAGAATCGGTTTTATCAGGAGCAATAACCTGCCTTATATGTATCTCCAGAATTAAAAGAGATGATCAGATATGGACATGTAACAATTGTTTTGGTGGATTTCACTTAAATTGCATTCAAAGATGGTCAAAGGATACTGTtattcaattaaaacaaagaatagAGGATCAGACTTTGTCGACTGTAAAGTCTTTATTCTGGTGCTGTCCAAAATGTCGATATGAATACAACCCAAACCAAATTCCTGACAAATACGTTTGTTTTTGTGGAAGATCTGAAAACCCAAAGTATCAACCGTTCTTAGTACCGCATAGTTGTGGTGAACTATGTCAAAAAGAGTTAATACCTCGTTGTGGCCACAAGTGTCTTTTATTATGTCATCCagGACCATGTCCACCATGTCCTGTAACTGTCAATGTTTCTTGTTATTGTGGCTCGAATGAACCCGTGACCAAAAGATGCAGTTTAAGAGGATGGTCATGTGGCAAACCCTGTGCCAAAACCTTATCCTGTAATAAGCATGCCTGTAGGGAGCCATGTCACGAAGGTACTTGCAAGGACTGTTTAAAAAAGAGTATACAAAAGTGTATGTGTGGAGGACAACAGAAATTAAGGGATTGTAATTCGCCCATTTGGCAATGTGATAAGGTTTGCGAAAAACCTCTTGATTGTGGTAAACACAAATGCGAAAATGTTTGTCATGCGGGAGTTTGTGATACATGTCCTTTGACAAAACCAAGAACTTGTCCTTGTGGCAAGACAAAATATCAACTGCCTTGTACTGAAAGTACACCCACTTGTCCAGACACTTGTGGGAAATTATTGGAATGTGGAATACATACTTGTAATTTCAGATGTCATAAGGATAAGTGTGGTTTGTGTTTAGAAATGGTAACTAAGGCCTGCAGATGTCATCACCATTTCAAAGAAATTCAATGTTGCAAGCAATACCTGTGcgaaacaaaatgtaaaaaattgaaagattGCAATAAACATCCTTGCAACAGAaagTGTTGTGATGGGAACTGTCCACCGTGTGAAAAACCTTGTGGACAAACATTGCAATGTGGGAATCACAAATGCCCGTCTGTTTGTCACAGAGGTCCGTGTTTTCCTTGTCAGCAAACAAATACACTGTCTTGCAGATGTGGAGGTACTAAGATTACAGTACCTTGTGGCAAAAGGCATAAAGTAAAGCCACCAAAATGCACTAAACCATGCAAaATACCTCCCAATTGTCATCACCAAAAGCGCGACAATCACAAGTGTCACTTCGGTGACTGCCCATCATGTCGCCAAACTTGCAAAAAGTCCAGATCGAGTTGCTCACATTTGTGTACGGCAGTTTGTCACTCATCGGTGGTCGTTAAAATTGAGGCACAAAAGGCTACAATGCCTTGGGAACAAACGTCTCcacaatttgaaagaaaatgcCTTCCGTGTCCAGATTGCAAGGAACCCGTCATGGTGACTTGTTTGGGAGAACATGAGACATCGCCATGGCCTTGTCATTTAGCAAAACCATCAAACTGCGGCAGACCATGCGGCAGAATACTTCGATGTACCAATCATACCTGTTCATTGTCTTGTCACGTCGTTGAATGCACCAGCGATAAACTTTTGGCTGGATCTAACTGTGAATCGTGCGAAAATCCATGTTCGAAACCACGTCCAGAAGGGTGTGCGCATTCCTGTCCGAAACCGTGTCATCCGGATGCATGTCCACCGTGCAAACAAATGCTGAGGATAAAGTGCCATTGTGGCCTTACCCAGCCTTATGTGCCCTGTTCGAGTTGGCAAGATGTCGAAAAAAGAGAGGAATTGCAAAGTTGTGGCAATCAGTGTCCTAAAAATTATCCTTGCGGCCATCGCTGCAAGTCCAACTGTCATTCTGGCCAGTGTCCTAATCCAGAATCGTgcaagaaaaaaatgaaaataacctGTAATTGCAAGAGATTAAAGAAAGAATTCCAGTGCGAGGCTATTCGCAATGGTTTAGCCAAAGCGGAGTGCGACGAAGTTTGCAAAGAGAAACAAGAAGAAGGGAGAAAGAAGAGACAAGCGGACGAAGCGATAAGACTAAAAGAACaagaattgaaaaataaaaaagaattggaagaatACGAGAAGAAACTGATTGGAAAGAAGAAATCCAAAGGAAAAAGGATTAATGAAGAAGTTGAAGAGAGTAGTTTCATTGGGAAATATTGGATAGTAATATTGTCCGTATTTTTGGTTGTGACATCGGTAGTTATTTATCAAGCACTTAGTTAG
- Protein Sequence
- MSNKAKPNPWKQNNSNQKQKKVLKDSTNVGPGLSATAEHKFKEAQAKLQNAVKKHIKDYESSSDEEDIDSTDLIESILKQYSKTGGTNDQILKTQTFIEESVLSGAITCLICISRIKRDDQIWTCNNCFGGFHLNCIQRWSKDTVIQLKQRIEDQTLSTVKSLFWCCPKCRYEYNPNQIPDKYVCFCGRSENPKYQPFLVPHSCGELCQKELIPRCGHKCLLLCHPGPCPPCPVTVNVSCYCGSNEPVTKRCSLRGWSCGKPCAKTLSCNKHACREPCHEGTCKDCLKKSIQKCMCGGQQKLRDCNSPIWQCDKVCEKPLDCGKHKCENVCHAGVCDTCPLTKPRTCPCGKTKYQLPCTESTPTCPDTCGKLLECGIHTCNFRCHKDKCGLCLEMVTKACRCHHHFKEIQCCKQYLCETKCKKLKDCNKHPCNRKCCDGNCPPCEKPCGQTLQCGNHKCPSVCHRGPCFPCQQTNTLSCRCGGTKITVPCGKRHKVKPPKCTKPCKIPPNCHHQKRDNHKCHFGDCPSCRQTCKKSRSSCSHLCTAVCHSSVVVKIEAQKATMPWEQTSPQFERKCLPCPDCKEPVMVTCLGEHETSPWPCHLAKPSNCGRPCGRILRCTNHTCSLSCHVVECTSDKLLAGSNCESCENPCSKPRPEGCAHSCPKPCHPDACPPCKQMLRIKCHCGLTQPYVPCSSWQDVEKREELQSCGNQCPKNYPCGHRCKSNCHSGQCPNPESCKKKMKITCNCKRLKKEFQCEAIRNGLAKAECDEVCKEKQEEGRKKRQADEAIRLKEQELKNKKELEEYEKKLIGKKKSKGKRINEEVEESSFIGKYWIVILSVFLVVTSVVIYQALS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -