Sory009660.1
Basic Information
- Insect
- Sitophilus oryzae
- Gene Symbol
- -
- Assembly
- GCA_002938485.2
- Location
- NW:773568-812636[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.12 6.3 7.2 5.3 1 23 19 41 19 41 0.98 2 18 0.052 2.7 8.3 1.0 1 23 83 105 83 105 0.98 3 18 1.1 57 4.1 3.7 1 23 221 243 221 243 0.96 4 18 0.0014 0.074 13.2 4.0 1 23 259 281 259 281 0.98 5 18 0.051 2.6 8.4 4.8 1 23 293 315 293 315 0.98 6 18 3.9 2e+02 2.4 2.5 1 23 321 344 321 344 0.92 7 18 0.046 2.4 8.5 0.7 2 23 363 385 362 385 0.95 8 18 0.0029 0.15 12.3 1.6 2 23 453 475 452 475 0.96 9 18 2.5 1.3e+02 3.0 2.3 1 23 491 515 491 515 0.97 10 18 0.25 13 6.2 0.1 3 23 525 546 524 546 0.97 11 18 0.0032 0.17 12.1 0.3 1 23 579 601 579 601 0.98 12 18 0.025 1.3 9.3 1.5 1 23 611 633 611 633 0.96 13 18 0.51 27 5.2 4.3 1 19 637 655 637 659 0.92 14 18 0.00024 0.013 15.6 0.8 1 23 668 690 668 690 0.98 15 18 0.00044 0.023 14.8 0.8 1 23 699 721 699 721 0.98 16 18 0.013 0.69 10.2 1.3 2 23 731 752 730 752 0.97 17 18 0.00032 0.017 15.3 2.7 2 23 763 784 762 784 0.97 18 18 0.0047 0.24 11.6 3.2 1 23 792 814 792 814 0.98
Sequence Information
- Coding Sequence
- ATGTCTGACAATGAAAATTCAAGAACGCCAAACCACCAAGTTCCAGTAGAAACATATAAATGTTCCCAGTGCAATTTCTATACTAATCATgaatattatttacaacaacatAGCTTAACACACAGTTTACAAAATTTAGTGGAACAATATAAAAGAAACCAATCCAATTACGATACCGATAATCAAATACAATCATATTTGAGACCACATAATATAAGCCACAGTATTCAAATGCCAGTAAAATATTTCCAGTGTCTACAGTGTAATTTTGAAACAAATCAAGAGACTTATTATAAAGAACATATATTAATACACGAAACACAACCCTCAATTAATGGTTACAGAATATCAACTCAGCGTAATTTTGATGAGGAGCAGGAATCTTATATTAAACCTAATATAAGTAATGTGTTATCTATTGATAATTTTAGTAGTAATTATGTTAAACAAGAGCAAAGAAATGTAAAGCCTCATAATCTAACACAAAGCACACAAGTTTTTGAAAACTGTTTTTTGAAGCAGCCAGATCTAGATACAGAGCCTTTAGAAAATTTTAGATGTCTTAACAGTAACAGTAATTGTACATCTGAGACACAAGAAgagtttgattttaaacaacaCAGTCTGAGTGATGACTTACAAATTCCATGTCCAGAAGTTTTCAAGTGTACCAAATGTCTTTATAAAAGCCTTCACGAGGAAGATTTGAAACAGCACATTAAACAACATCAAGAAGAAATAATACTGGAAGAAAAGAAACTCACAATTGAAGTGTTTAAGTGTCACAATTGTAATTACTCAACCAATCTTAAAGCATTTTTAGAACGGCATATGTCAAGCCATACAAGGCCATCAGCACAAATTAAAGCCACAAAGCATAAATGTTCAATATGTAACTTTGTAACAGAGCatgtaaagtttttaaaaagacatttattaAGTCACAAAGAGAGCAAATCATATAAGTGTAAAATGTGTAGCTTTGAAACCCTTTatagaaaaatgtatttaaaacatATAGCCACAAAACATAAATTGATAAAAAAGGTTTCAGCAAAAAAAAGGAAATACGATATAATAACTGTCAAGTGTATGGAATGTAATTTTGAAACAGAAACAAAGGAACAGTTGGAGATACATAAAAAATTGAGACATAGAGATAAATCCGATGATTCAAATTTACATATATGTCAGTTTTGTGAATATCAAACTAATTGGGAACCCTGTTTGAAACGTCACATTGAAAGACTGCACCCTAGCAAGGTTGCAGAACCAGCAAAGAGAGCTAAAGCAAAAGACAAATCTACAAAAGCAAAAAAAGGTAATAGAAAGAATAGCTCAGGTAAGGAAATGCTTAGATGTAACAATTGTGATTTTACGTCAACAAGTAAACAATACCTCATATTACATTTAAAACGGTCTCATATATGTAAGGAGCCTGAATCTAAAGCTACTGCAGCTTCAAAGATATATAGATGCAAgcaaaaaaattgcttgtttgTGAGCACAGTCAAGTATACTTTCATTCAACATGTTAAGAATCACAGACGTCAGAAGACAATTTCTAATTTGTGTGACTTGTGTGATTTTATATCTGAGAGTGCCGATAAACTAGCTGCTCACAAGAAAAAAGTTCACCTTACCTATTTACTCAAAGTTTATAAGTGCTCGCAGTGTGATTTTAAGACAGTGTGTCGGAACAGTTTTAAAGCACATTCTGTAAAACACAAGTCTTATTTTTGTAACATTTGCAATGAACAACTAGTATCTGCTTATGCAATGGTAAAGCATAGAAGATCTCACAAAATTCAAAAGCAGaagaacataatttatttatgtgACGTGTGCGGTTTCCAGAGCAAGAATGATAGATCTTTGAAGATGCACAAAAAGACCCACAATCCAGAATTTAAGTGTCCAGATTGTCCATTCGAGACCCATAGTAAGATCAACTTCCAAAACCACTGCATCAACCACAAAAGCGCAGACGAAGTTACCATGTTTCCTTGTCCTTACTGCTCCTACCAATCCAGGCTGAAGCGCAATCTGGCATGGCATATGAAACGTCACGCCGACCCCACCAAAGCCAAAATCTTCAAGTGCCCTTCTTGTGACTACCAGACCTTCACCAATGCCCAACTCAAGTCCCATCTTATGGTACATAAGAGCAAAGAAGAAGTGGTAATGCTGAAATGCGATTTTTGCCCTTTCGAAACTAAAAGAAAGTCGAATATAGTTCAACACAGGCTGCGCCATTTGAAAGATTCGCCCGATGTCCCGCTTTTGTCCTGTCCTGACTGTAACTATACCACAGTAGCGAAGAGACATCTTAATAAGCACCGGAAAACACACAATGTGAATCCTGATAAGATGTTTCAGTGTTCATATTGTCCCTTTAAGATTCACAGGAAGGTGTATCTGATGAGACACATGGAGAACCATAAAAACGTAGATCCAGTGGAATCTCCGTGGGAGAGGTACCCGTATGCCCCTCAGGGGAACGTGGGAGTGACTATAGTGCCTAATTTGGGCCAAAATATGTCCCATAGTTTTTAG
- Protein Sequence
- MSDNENSRTPNHQVPVETYKCSQCNFYTNHEYYLQQHSLTHSLQNLVEQYKRNQSNYDTDNQIQSYLRPHNISHSIQMPVKYFQCLQCNFETNQETYYKEHILIHETQPSINGYRISTQRNFDEEQESYIKPNISNVLSIDNFSSNYVKQEQRNVKPHNLTQSTQVFENCFLKQPDLDTEPLENFRCLNSNSNCTSETQEEFDFKQHSLSDDLQIPCPEVFKCTKCLYKSLHEEDLKQHIKQHQEEIILEEKKLTIEVFKCHNCNYSTNLKAFLERHMSSHTRPSAQIKATKHKCSICNFVTEHVKFLKRHLLSHKESKSYKCKMCSFETLYRKMYLKHIATKHKLIKKVSAKKRKYDIITVKCMECNFETETKEQLEIHKKLRHRDKSDDSNLHICQFCEYQTNWEPCLKRHIERLHPSKVAEPAKRAKAKDKSTKAKKGNRKNSSGKEMLRCNNCDFTSTSKQYLILHLKRSHICKEPESKATAASKIYRCKQKNCLFVSTVKYTFIQHVKNHRRQKTISNLCDLCDFISESADKLAAHKKKVHLTYLLKVYKCSQCDFKTVCRNSFKAHSVKHKSYFCNICNEQLVSAYAMVKHRRSHKIQKQKNIIYLCDVCGFQSKNDRSLKMHKKTHNPEFKCPDCPFETHSKINFQNHCINHKSADEVTMFPCPYCSYQSRLKRNLAWHMKRHADPTKAKIFKCPSCDYQTFTNAQLKSHLMVHKSKEEVVMLKCDFCPFETKRKSNIVQHRLRHLKDSPDVPLLSCPDCNYTTVAKRHLNKHRKTHNVNPDKMFQCSYCPFKIHRKVYLMRHMENHKNVDPVESPWERYPYAPQGNVGVTIVPNLGQNMSHSF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -