Basic Information

Insect: Sitophilus oryzae
Gene Symbol: ci
Assembly: GCA_002938485.2
Location: NW:2760120-2995098[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.00013 0.0069 16.5 0.7 3 23 306 329 304 329 0.94

2 5 0.12 6.5 7.1 0.1 3 23 339 364 337 364 0.79

3 5 0.00017 0.009 16.1 2.0 1 23 370 394 370 394 0.97

4 5 0.00027 0.014 15.5 0.4 1 23 400 425 400 425 0.97

5 5 6.4e-06 0.00033 20.6 0.3 1 23 431 456 431 456 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.00013	0.0069	16.5	0.7	3	23	306	329	304	329	0.94
2	5	0.12	6.5	7.1	0.1	3	23	339	364	337	364	0.79
3	5	0.00017	0.009	16.1	2.0	1	23	370	394	370	394	0.97
4	5	0.00027	0.014	15.5	0.4	1	23	400	425	400	425	0.97
5	5	6.4e-06	0.00033	20.6	0.3	1	23	431	456	431	456	0.97

Sequence Information

Coding Sequence: ATGCCCGAGAAACAGGACGGCGCGGGGGGCGGCTTGACGGCAGGCCCGCCCCTGATGGCTTTTCCCGGCACCCCGTTCGGTGCCTTCCCGCCGGGCCCCCCAGGGCCGCCGCCTCCAGATCGGTTCGCTTGGCCCCATCAGCCGCCGCAAGCCTTTCATCCACCACCAAGtgtTGGGGCTAGTCCGGGTAGCAGTATACTATTAAGCAGGGAATTGCACCCTGCTTATAGACTGCCCCCTCATATGGAGTATCTCTATTCTCTTCAACATTCCACAGCTAACTCTATCCATGGACTGGGACTGAGTTCTGAGTACCTGAACGCAAGAGGCTTGACTGATCTACACCCTGCTTCTACGCTGGCCAGCAGTGAATTCCCCTTTAGTTTAGACGGTTCGCGCCTATGCTCGCCCCGACTAGCCCGTGCCTCCCGCAAGCGCGCCCTCTCCGCCTCGCCCTACTCCGACCTGGACCTCACCTCCGTGATCCGCTTTTCGCCCTCCTCCCTCGCCTCGCTCGCCGCCGGCAGCAGGAGCTCGTCGGCGTGCAGCGGCTCGCTGGGCCACCTGTCGGCGGGGGCGCTGAGCCCGGCCCTGCACCCCGCGCTGCTGCTGCGCGGGCCGGGCGCGCCTCCCCTTCTGCATCCCCATGCGCATGCTGCCGCCGCGGCTGCGTTCGGGCTGCACGGGTCCGCGCAGCATCTGGGCCACGCGCAGCACTGCGCCGGCCCGTTACCTAAGACTGATAATaaTTTTAATGATAGAAGAAAATCCGATCACCACAACTCCATCATAGACGTAGAAATTCGAAATCATCCCAGAATCAAAAAAGAACCCATTTCTGCCGCCAATCCATCGGAAGGAAACGGCGACCAAAACGATCTCAAAGATGAACCCGGTGACTTTATCGAAACGAACTGTCATTGGAAAGATTGCGGAACCGAATTCAATACTCAGGATGAACTAGTTAAGCATATAAACAATGATCATATTCACGCAAACAAGAAATCATTCGTGTGTCGATGGGAAGGGTGTTCGAGAGCAGAAAAACCCTTTAAGGCACAGTACATGCTGGTGGTTCATATGCGAAGGCATACAGGAGAAAAACCTCACAAATGCACGTTCGAAGGCTGCGTGAAGGCTTATTCTCGACTGGAAAACTTGAAGACTCACCTGAGATCGCACACAGGTGAGAAACCGTACACCTGcgagtaccctggctgttccaAGGCTTTCAGCAATGCTTCTGACAGGGCGAAACACCAAAACAGGACACACAGTAACGAGAAACCGTACGTATGCAAAGCGCCAGGATGCACGAAACGCTACACCGATCCGTCCTCCCTGCGCAAACACGTGAAAACGGTACACGGCGCAGAATTCTACGCCAGCAAGCGGTACAAGGGCGGCAACGGTCCCTCTAGCGATGAGGGCGGTGCAGGTTTGGATGCGTCACCTCGATCTGACGACGCCAAAACGACCAGTTTGAGCAGTCCATCTGTCAAGTCCGAGTCCGATGCGCAGTCGCCTCAAGCTCAGGGAAGTCCGGCAGGGCAGGATATGGATTCGATGCGTCTCACAACTCCTGGAGTAACAGACACGCTGGAAGACTGGACTGCAGAGGCAGAAGATCTCGAACTGGATGAACTTCCTGTAGTTCTTCGAGCATTGGTAGGTGGAGGAGCAGCCCCTACCGGTGTTGGACCACCTAGACTTCGAAAACCAgttGGTAGACCAAGGGCGCCGGCGTTGGCTCAACGTAAGATAGCAGAATTAAACACGAGAATAACGAACCTAAAGATGGACGCTACCACGCAACCGCAACCTAAATCTCAACTCACCGAGCTTCAACAACGGCTTCAACCTCCAGTTTCTCAACAGCAACAAGCTCAAATTCGGCGAGATAGCAACTCTACTGTCAGTTCGTACTATGGCAGCATGAGAAGCGCCGATATGAGCAGGAAGAGCAGCCTTGCTTCTCAGgTGTCAAGTATGAAGCCTGGTCCAGGCCCTGGGTCATTTTACGATCCAATATCAGCTGGTAGTTCAAGGAGGTCAAGTCAGCTTTCCACAGCTACCACTGGAGGTCAGTGTTTACCTCCTCCACCGCCGTCACACTTACTGGCAGGTCAGCTTCAACGGTTGCAGGGTAGTAACCATGTCAATTCAAGCAACTTAATTTTACAGACGCAATCTACAAACTTACAACAAGCAGCAGCCCATACTCAGAACTTCCTCTGGACGTCGACCACAAGCTCAGAAGCACGTAGAGCTTCTGAACCATCACGTCCAGGCCTTGATCCCCGAAGTCCACCTCCAAGACCTTCTTCAGTGAGTTTAAGTCCTTTAAGGAAGGTTCACAGTTCGACTGAGTTGCATCCCAACCAGGCTGTTCAGTTAGATGAAGTTGGTGAAGGCGAGATGGTAGAAAACAAACTGGTTCTGCCTGATGAGGTTTTGATGTATCTGAATCAAGTAGCAGATGCCCAGCAGGGTTCCAATTGGTCTGAAACCACAACACAGCCGCTTCAAAGTCCGACGAATACTATGGTTCCATCGCCGAGCAGTTTTAAACCGTTGTCACCAGCAAATAATCAAGTAAATCAGATGATGGGGCCTTCAAATCAAGTAACCATGTCACCCAGGAGTAATCAAATAATGTCTCCaccagCTTATCAACTCATGCCATCTCCTGGACCTCAAATGATTTTATCACCAGCCAGCAACATGATGCCAAGTCCAGCAAGTAATTTGGAGCACATGTTGTCACCCAATCCTAACCAAATTTTATCACCATCCAGCAATATGATGCCAAGCCCAGCAAGTAACTTGGAGCACATGATGTCACCCAATCCTAATCAAATTTTACCGTCTCCAAATTCGAACTATCAGGTTATTCCATCACCAAGCTCCATTTACAATGACCAAGTCCAGTACAATGCTATGTCACCGGCTCAGGCTAACATAGCTTCGCCAGCTTCGAACTACAATCAAATGGTGGCGTCTCCAATGTCAACAAGGTGTCAACCACAATTGATGTCACCTTCGCATGCCAATAATATGACTCAGCATTGTCACGGAAATCATACAATGATGCAAAATAATACAGCACAACAAATGGTGCCACAAAATTGTCAGCAAACCAACTGTTCGTCAATGATGAACCAAAATCATCAACAGAGGCAGAATAATGGATGTTTTAATACTAACGGACAAATACAGCATCCAAACTGCTACATGTCCGGATCTTGGTGCCAAAACAGCAACATGCAAATGCAGCATAATAACGCCTGTAACAACCAAAACCACATGTACAATCAGCAATGTCAGAATAACTCGATGGCCATGAACTCAAACTACATGAACCAGCAAACGCCTAACATGCACTGCGCGGAACACAACCCTTATGCTCAGCAGTATATGAAGCAGCAATCCCAAAACCAAGGGAACTACAACAATTATCAGCAAACACAAAATGCCTTACCATCACCAGCAGCAGGTACTTTGGCACCAAGTACTTACGAGGCACCAACTATGAGACCAGATACTTACCAACGCACTTTAGAGTACGTTCAGTCATGTCAAAGTTGGAACGCATCTACAGAGCAAACTAACCATCCTAATATGGTTGTTGGTGACATGACTTCTTCATTAACATCTTTACTTGAAGAAAACAGATATTTACAGATGATACAATAG
Protein Sequence: MPEKQDGAGGGLTAGPPLMAFPGTPFGAFPPGPPGPPPPDRFAWPHQPPQAFHPPPSVGASPGSSILLSRELHPAYRLPPHMEYLYSLQHSTANSIHGLGLSSEYLNARGLTDLHPASTLASSEFPFSLDGSRLCSPRLARASRKRALSASPYSDLDLTSVIRFSPSSLASLAAGSRSSSACSGSLGHLSAGALSPALHPALLLRGPGAPPLLHPHAHAAAAAAFGLHGSAQHLGHAQHCAGPLPKTDNNFNDRRKSDHHNSIIDVEIRNHPRIKKEPISAANPSEGNGDQNDLKDEPGDFIETNCHWKDCGTEFNTQDELVKHINNDHIHANKKSFVCRWEGCSRAEKPFKAQYMLVVHMRRHTGEKPHKCTFEGCVKAYSRLENLKTHLRSHTGEKPYTCEYPGCSKAFSNASDRAKHQNRTHSNEKPYVCKAPGCTKRYTDPSSLRKHVKTVHGAEFYASKRYKGGNGPSSDEGGAGLDASPRSDDAKTTSLSSPSVKSESDAQSPQAQGSPAGQDMDSMRLTTPGVTDTLEDWTAEAEDLELDELPVVLRALVGGGAAPTGVGPPRLRKPVGRPRAPALAQRKIAELNTRITNLKMDATTQPQPKSQLTELQQRLQPPVSQQQQAQIRRDSNSTVSSYYGSMRSADMSRKSSLASQVSSMKPGPGPGSFYDPISAGSSRRSSQLSTATTGGQCLPPPPPSHLLAGQLQRLQGSNHVNSSNLILQTQSTNLQQAAAHTQNFLWTSTTSSEARRASEPSRPGLDPRSPPPRPSSVSLSPLRKVHSSTELHPNQAVQLDEVGEGEMVENKLVLPDEVLMYLNQVADAQQGSNWSETTTQPLQSPTNTMVPSPSSFKPLSPANNQVNQMMGPSNQVTMSPRSNQIMSPPAYQLMPSPGPQMILSPASNMMPSPASNLEHMLSPNPNQILSPSSNMMPSPASNLEHMMSPNPNQILPSPNSNYQVIPSPSSIYNDQVQYNAMSPAQANIASPASNYNQMVASPMSTRCQPQLMSPSHANNMTQHCHGNHTMMQNNTAQQMVPQNCQQTNCSSMMNQNHQQRQNNGCFNTNGQIQHPNCYMSGSWCQNSNMQMQHNNACNNQNHMYNQQCQNNSMAMNSNYMNQQTPNMHCAEHNPYAQQYMKQQSQNQGNYNNYQQTQNALPSPAAGTLAPSTYEAPTMRPDTYQRTLEYVQSCQSWNASTEQTNHPNMVVGDMTSSLTSLLEENRYLQMIQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00376682;
90% Identity: -
80% Identity: -