Sory009328.1
Basic Information
- Insect
- Sitophilus oryzae
- Gene Symbol
- ken
- Assembly
- GCA_002938485.2
- Location
- NW:525850-583349[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.58 30 5.0 0.4 3 23 164 186 162 186 0.91 2 16 0.36 19 5.7 4.9 1 22 291 312 291 315 0.91 3 16 1.3 67 3.9 1.1 2 22 327 347 326 350 0.87 4 16 0.56 29 5.1 1.8 2 19 372 389 371 395 0.89 5 16 0.0012 0.06 13.5 2.3 1 23 408 431 408 431 0.96 6 16 0.011 0.56 10.5 1.7 1 23 436 460 436 460 0.92 7 16 0.0037 0.19 11.9 0.7 2 23 478 500 478 500 0.95 8 16 6.4e-05 0.0033 17.5 0.6 2 22 506 526 505 526 0.96 9 16 0.34 18 5.7 0.6 1 23 540 562 540 562 0.86 10 16 0.0009 0.047 13.9 2.0 1 23 586 607 586 607 0.98 11 16 0.012 0.63 10.3 1.9 1 23 613 635 613 635 0.96 12 16 0.00042 0.022 14.9 1.6 1 23 653 675 653 675 0.95 13 16 0.14 7.5 6.9 1.3 1 23 680 704 680 704 0.97 14 16 0.0082 0.43 10.8 0.9 1 23 710 732 710 732 0.97 15 16 0.00016 0.0081 16.3 4.8 1 23 738 760 738 760 0.98 16 16 0.00032 0.017 15.3 3.7 1 21 766 786 766 791 0.93
Sequence Information
- Coding Sequence
- ATGATTTTGACCCACCTACTTTATATTATACCatccaatatttttttaggaaaatggAAACCAAGTTCAGAAGAAATGGAAATAGCTTCACCAACAGATACGAAAGTAAAATGGAAACCTAAGTCTGAGGATAGCACAGTTCCTCCTCCATATCACACAAAAGgaaaatggAAACCAAAATCCATGTCAGAGATCGAAAATTCCTCAGTTAATATTACAGAAACACCAAAAGAAAAAGTCTCCGTTGTCAaaccaaaagataaaaaagaaaCAGTTGTTTCTGTCAACCCTTTAAAACCTCCAGAACACCATACTAAAGGAAAATGGAAACCATCTGACGACTCTTCTGATAATATTGATATCAAATCAAACAAGACGAAATTACAGCTGAACAAAAACGATAACTGGTTATCTACGTCCCCAATATTAGACTTCAAAGAATCAGATGGGTCTCCATTTAGGAAGTCCAatggAACGGTACAATATTGGTGTAGTACTTGTAATCGTAGGCTAGCATCGAAAATTGTCTACGAGCGTCATTTGAAATCGGATCTTCATTTTAAAAGAACTCGACCAGAAGGCGAATTTGATGATGGTGCAGCAATAAGAAGAAAACGTATTAAATTAGAATCTGAATCGGTTAAGCCACCAGTAGCTGAAAATAAGGTCAAAGAACCAACGAACTATGAAAAGAAAAGAAAGCGCAgaaagatttttgaaatatgtaaGGTATGCCAATCAAAAGTCAATAAATACCTTATGGGCAAACATTTGATATCTCATTATCATTGTCGAAAAGGAGATATTTCGACTGGAGCTGCTAAAACTATGGTTTTAGAGAATATACATAGCATTATTCTGGAAAGTCCATTTCAGTGCCACGTCTGTAAATTTTACTGTAACAATCAGGAACAATTCTTAGAACATTGGCAATCTAACTTGcacaaaaccaaaaatcaatCTTACCCAGGTTATTTCTTATGTGCATTTTGTAAACAACGTTGCGAAGATTCCGACAGTATGTTTATTCACTTAAGTTCACCCGAACATCTAGAAGTAGTATCGGTGATTAATCGATCAGTGCCGATCACcatcaaaaaaattaatgaaCTTTCCTGTCTAAGTTGTAACAAGAAATTCACTCTCAATATTCAATTATTAAATCACTGTAGAAATGTTGGACATAATGCGACGAACGTCAATGTATTTAATAAGGAAAGTTATCAGTGCGAGCACTGCGTCAAGGTATTTTACAGTGCTGTTTCTATACAAAGACATAAAAAACTTAAACACAAAGAAGACTATTTTTTCTGTACAGTATGCAATTTGaagtttaaaaacaaattagaaGCCAGGAAGCATCGGATGACTTCAGCACATAGATATGCTACTTTGGAAAAGAGAAAACTAAAAGGTAAAAGCTTAAGAAGAAAATGCGAATATTGTgacgaatatttttcaaatttcttaCTATTAAAAGAACATTTAAAAGACCAACATCCCGAACATAAAATAAGGTGTCCGCATTGTGGGACTAAATTTACGGTTACTCAAGAATTAACAAATCATTTACGAACCAAATCGTGTAAGTTCGCAGAAACCCCAGAAGAAGATCTTTACAAATGTGAGAAATGTCCTTTCACATCTAATTCGACTTCGGAATTACTCTTTCATGTGGCGCTACATGATGAACCGTTCCTAGAATACTCTGCAGACACATCAGgTGTAACAGTGAAAAGTAAACCTGTTCCAAAATACAAGTGCCCTCTTTGTTTGAAATTCTTTCCAAAACACTCACTACAAGCCCATATACGACTACATACACAAGAGCGACCCTACGCATGCAAATTCTGCAGTGCAACATTTGCTAGAAAAAATAACTTGTTGTTTCATCAAAAAAATCACGAGAAAAATGAACACATTAAGCCTAAGAAACCGGTCAGCGATGAGAAGAGTTTCTTATGCTCAACATGCGGATCCGGATTTAACAAAAAgtTTACTCTTCAACAACATATGTTAACTCATAGTGGAAAATTATTTCGATGCCCAGAAAGTGACTGTTTCTATACGGCAAGAAAAATGAGTGAACTACGAGAACACTTCAAATATCATAGTGACGAAAAAAACTTCGCCTGCGAAATTTGCAGCTATAAAGGAAAGACTATGAAGCAACTTAAACAGCATCAAACAGTCCACGCAGAAGAAAAACGATACCGTTGCTCACTTTGTGACTTTAAATCAAGAACTACTTCTCACCTGAAAAGACACATTCGACTGCATACTGGTGCAAAACCTTACAACTGCCCTCATTGTGACTATAGATGCAACAGTTTGGAAAATCTTCGCAAACATATTTTATCCACAACGAAACATCCCGGGAAATCTATTTACGAATGTAAATTCTGCATCCAGTCTCCTGCTTTTGAAGCAAATTTcgctaaagattttaaaaaacatcTGCTGTTAGAACACCATGATACGTTTGCTAATAATAAAGATGCGGCCTCTTACATTGTGGGGATATATGAAGAACAAGAAGACACCAGTTACTTTATTGACATCGTGGATGATCTAGATCAACCTGGACCTAGCAGCAGTATGGATCCTAAACCTGACTCGACAGACAACATTCTGAAGCAAAAAACGACTGAAGATCCTGTGGTTCCACAAGTAACAGCTCCGTCAGATATTGCCAGCAAGGAATCTACATTAGACCAAATGTTACCGATGTTTATCATTCCTAAAGACGATACCGATAATGTGGAAGTCACTCCCGACTCTTGGAATCTTATTGGACGGTACGACGTGGAAGAATCAGGAACGCTCGTACCATTTCAAAGCGAAGAAGAAGACGAATTATTCCAAGAACATTTTTGA
- Protein Sequence
- MILTHLLYIIPSNIFLGKWKPSSEEMEIASPTDTKVKWKPKSEDSTVPPPYHTKGKWKPKSMSEIENSSVNITETPKEKVSVVKPKDKKETVVSVNPLKPPEHHTKGKWKPSDDSSDNIDIKSNKTKLQLNKNDNWLSTSPILDFKESDGSPFRKSNGTVQYWCSTCNRRLASKIVYERHLKSDLHFKRTRPEGEFDDGAAIRRKRIKLESESVKPPVAENKVKEPTNYEKKRKRRKIFEICKVCQSKVNKYLMGKHLISHYHCRKGDISTGAAKTMVLENIHSIILESPFQCHVCKFYCNNQEQFLEHWQSNLHKTKNQSYPGYFLCAFCKQRCEDSDSMFIHLSSPEHLEVVSVINRSVPITIKKINELSCLSCNKKFTLNIQLLNHCRNVGHNATNVNVFNKESYQCEHCVKVFYSAVSIQRHKKLKHKEDYFFCTVCNLKFKNKLEARKHRMTSAHRYATLEKRKLKGKSLRRKCEYCDEYFSNFLLLKEHLKDQHPEHKIRCPHCGTKFTVTQELTNHLRTKSCKFAETPEEDLYKCEKCPFTSNSTSELLFHVALHDEPFLEYSADTSGVTVKSKPVPKYKCPLCLKFFPKHSLQAHIRLHTQERPYACKFCSATFARKNNLLFHQKNHEKNEHIKPKKPVSDEKSFLCSTCGSGFNKKFTLQQHMLTHSGKLFRCPESDCFYTARKMSELREHFKYHSDEKNFACEICSYKGKTMKQLKQHQTVHAEEKRYRCSLCDFKSRTTSHLKRHIRLHTGAKPYNCPHCDYRCNSLENLRKHILSTTKHPGKSIYECKFCIQSPAFEANFAKDFKKHLLLEHHDTFANNKDAASYIVGIYEEQEDTSYFIDIVDDLDQPGPSSSMDPKPDSTDNILKQKTTEDPVVPQVTAPSDIASKESTLDQMLPMFIIPKDDTDNVEVTPDSWNLIGRYDVEESGTLVPFQSEEEDELFQEHF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -