Basic Information

Insect: Sitophilus oryzae
Gene Symbol: -
Assembly: GCA_002938485.2
Location: NW:1183111-1433093[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.014 0.71 10.1 0.1 2 20 246 264 245 266 0.93

2 17 6.9 3.6e+02 1.6 0.5 13 23 287 297 274 297 0.74

3 17 0.002 0.11 12.7 0.9 1 23 320 342 320 342 0.96

4 17 0.31 16 5.9 0.9 2 23 455 478 454 478 0.93

5 17 0.0024 0.12 12.5 0.0 2 23 501 523 500 523 0.95

6 17 0.015 0.78 10.0 0.3 2 23 529 551 528 551 0.95

7 17 0.0083 0.43 10.8 3.3 1 23 619 642 619 642 0.97

8 17 6.4 3.3e+02 1.7 0.1 1 9 662 670 662 681 0.92

9 17 0.0025 0.13 12.4 0.1 1 19 1107 1125 1107 1127 0.95

10 17 0.0042 0.22 11.7 0.2 3 23 1144 1165 1142 1165 0.92

11 17 0.011 0.55 10.5 0.2 1 23 1181 1203 1181 1203 0.97

12 17 0.13 6.6 7.1 1.1 1 23 1261 1283 1261 1283 0.98

13 17 0.016 0.85 9.9 2.1 1 23 1312 1334 1312 1334 0.98

14 17 0.0064 0.33 11.2 3.0 1 23 1363 1385 1363 1385 0.98

15 17 0.0064 0.33 11.2 3.0 1 23 1414 1436 1414 1436 0.98

16 17 0.086 4.5 7.6 1.2 1 23 1465 1487 1465 1487 0.98

17 17 0.25 13 6.2 2.6 1 19 1544 1562 1544 1562 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.014	0.71	10.1	0.1	2	20	246	264	245	266	0.93
2	17	6.9	3.6e+02	1.6	0.5	13	23	287	297	274	297	0.74
3	17	0.002	0.11	12.7	0.9	1	23	320	342	320	342	0.96
4	17	0.31	16	5.9	0.9	2	23	455	478	454	478	0.93
5	17	0.0024	0.12	12.5	0.0	2	23	501	523	500	523	0.95
6	17	0.015	0.78	10.0	0.3	2	23	529	551	528	551	0.95
7	17	0.0083	0.43	10.8	3.3	1	23	619	642	619	642	0.97
8	17	6.4	3.3e+02	1.7	0.1	1	9	662	670	662	681	0.92
9	17	0.0025	0.13	12.4	0.1	1	19	1107	1125	1107	1127	0.95
10	17	0.0042	0.22	11.7	0.2	3	23	1144	1165	1142	1165	0.92
11	17	0.011	0.55	10.5	0.2	1	23	1181	1203	1181	1203	0.97
12	17	0.13	6.6	7.1	1.1	1	23	1261	1283	1261	1283	0.98
13	17	0.016	0.85	9.9	2.1	1	23	1312	1334	1312	1334	0.98
14	17	0.0064	0.33	11.2	3.0	1	23	1363	1385	1363	1385	0.98
15	17	0.0064	0.33	11.2	3.0	1	23	1414	1436	1414	1436	0.98
16	17	0.086	4.5	7.6	1.2	1	23	1465	1487	1465	1487	0.98
17	17	0.25	13	6.2	2.6	1	19	1544	1562	1544	1562	0.93

Sequence Information

Coding Sequence: ATGGATAATCCGGGTGAAATAATGCGTTTTTGTAGACTGTGTTTAGTTAAGGACCAAGTTAATATTCCAATTTTTGAAGAACAAGGTGATATTAggcaaatatttttgaaaattagttCCTGTCTGCCGGTGAAGGTATCTAGAGAAgacaaattaccaaaaaaaatatgcgATGGATGCTCGAATAAGTTAGATTTACTGTATGAATTTTGGAATACGTCTGCGAATGCCGAGAAGACATTATTGTCTTGGTTAGGGCAAGCCGGCGTAAAAGATGTAGACCAAACCATTACAGCTGTAGCACAGCAAATTGCCAAGCCCTCTGAACCTCAAGTGAAAGAGGAGACTCCGGAGGATGGCCATGCAGCAGTGCAGAATACTGATCATTTAGGAATAAGCAATTCTGCTGTATTGGATGATagttctGCCAAAGATGAGACTGAAGAACCTCCTCCGAAGAGGGCGCGGCGCACCGCCGCAGTAAAAGCACAAATTAACCTTACTCCTGACTCTGAAGAAGAAGACGATGACCTGGACACTGCCGAGCCCATGACTAAGattgaAGATGAAAGCGATGAAAGTGACAATGATGATAAAGATCCCTCATATGTAGATGTACCTGGAACTAGTGCCGACGACCAGCCTGGTCCTTCAGGTGTCGGCAAGGATGGCGCCGAAGCACCgagtacaAAGGAAGATTCTTCAAATCCGTCAGTTAAGCTTCTTCAATCTTTATACTGTAACAAGTGCGGTGCTTCGTTCCAGAATCTTGAATTATTATACAGTCATATCATCAACCCCGGTAGCAGCGATCATACTTTTCGATGCGCTTCTTGCAACTGCAATGTTGGAAACACCATAATTAATCTTACGGACCACATTCGCAAACATTGCGACGAAGAAGTTGTTGCGGAAAAAGAAAGGACTATTGCAGAAAGTCAGTCCACCAAACCAAGATATTTTTGTGAGAAATGCGGAAaggcattttttgtttttcaagaTCTATTCAAGCACGCGTCAGTTCATGTCGATGATTTAATTTGTTGTACGCAATGTTCCGTTAAAAACTCTAGTTTAAGACAGATCATATTGCACTTTCGGCAGCATTGTGTCACGTATGACAATAAAACACCAAATAAATTACCGATTATTACAGATAAAACGAGCGAAGAAACTGTGGCAAATACAAacaaaccaaaaagtaaaaCTATTTTGCAGAATGATAGTAGTATTGAAAATTCTAACTCCGACAAcataataaaaagtaaacaaattatattttgtgaGTTTTGTCGGcttaattttttctgttttttgcGTTATTTCAATCATAGATCTTTAGTCCACAGTCAAGACTTGATTTATTGCAAAAGTGATTGCGGGGAAAAGTTTACTGGCATGTTCTTTTGGCGGGAGCATTATAAATCTAGACACACATATAATGAATTGAGAAAAGacataaaaaactgtaaaatgaACAAAAATGATAGAATCACTATTTACTGCGAGGTATGTGGCGAAGGATTTGCAAACGCTTATAACAGACAACTTCACATAATTAGTTTACACGATAATAGGTATTTAATTTGCGCTGTCTGTCAACATCCATACTCTAACAACTATGCGTTTGCAGCTCATTTGTCAACCCGACATcggatttttaataaacaaacttTTAAATGTTTTGAGTGTACTAAAccaatatattttttgcatGTGTATCTATATCACGTTGGAACTCATAAGTATAATGCTGAAAGTAAACATTACCCTCGTTGTAGAATTTGTAAAGTAAAAATCCGTTCACAAATTGCACATGTAAGGCATATGAATAAACATATGTCATTcgcatatttttattgttttttctgtAATAACAGTTATAAATTTAGTGAAGAACTTCAGCTGCATATGAAATCTAAACATGGGTctttatattctgattataaCAGGTTTTTGTCAATTCCCTGCAACAAAAACCGATATGAGTGTCCAATATGTAAAGAAAGTATTCCAGAAATGTACATTTACCAACACTGGCGACTGGGGCATCCGGAGTCCGTTTCTAAAAAAAAAGCTATACTAGATGATTTTGCTAAAAGTAGTTTTTGCAAATCGTATAAGGAATTACAAAAAGTATCAGGTGCTATTGGCAGTCAACTCCTTACCGGAGCATATCTCATAAAAGAGACAAATTTAGAGGTTAGCCAAATATTGGGAACGACTTCTAATATTGGTGGTAGCGATACAAAAAGTGACAAATCTGATAACTCAACCATATTACCGGCTTCTGCCGATGAAGTTCACAAATCAGATGAAGATTCTACTGAAAGTAATTTAGATTCATCGGTTCCGTCTCTTACAGAAACCAAAACACTAAATAAAGAGTCCGTTTCTAGTGAAATCAAGGTAGATTCGAATTTGTCACTCAATTCTACTGATTCAAGTAAGCTTCAAGAAAATACAGACATATCCTCTTCTAAAGTTAACGAAGGCAATATGGCACTTAACCAAGGTATTTCAAATAATGAACATAATAAGCAGAAAACTACTTTAAACCTTGAAACTACTTCAAAATTGACTTTAAATAATCAGTCAAAAAATACCGATTCAAAAACTAGCTCAAATTTATCCATAAGTCAGACAAAAGAATGTTCTAGTAAATCAAATAGTAAAGAAACTGAAACTGAATCCTCAAATAATGAACATAATAAGCAGAAAACTAATTTAAACCTTGAAACTACTTCAAAATTGACTTTAAATAATCAGTCAAAAAATACCGATTCAAAAACTAAGGAGTTATCTATAAGTCAGACTAAAGAATACTCTAGTAACTCAAATAGTAAAGAAACTCAAGCTAAATCTAAGCCTACATTGAATGTTTTACCCTTAACCGATACTTCTAAATCAAGTTCGAAAGAGAATAAAACAAAGTCTTTGAAAAAGCAAGAATTATCCCAACCCTTAAGTGCAACTTTTAGTTCCGCAGCTTTACCACGAAATATACCTACTTTTCCTGTACCTGAGCCTCCTGCAAATACGTATTACTACCCATCCCAAGAAAATGTTAATTCTTATGGATATAATGCCACAAGCAATATACAGTATCAGAATTATTATCACCAATCTAGTTATGGTAACCAAAATGAGCTGTGGCAATCAACAATGGCTGCTCAACCTGTTTGGCAAGGAAGTATAATTGCTGAGACATATGTTCAGCAACCAACAGAGTATTTTCATCTGAATCAACAACCGATAATGCCTTCTCAGCCAGTAAATTTTTCTCAGCAGCCAATAATACCCccccaaaaaattaattacgaATGTAAAGGATGCAAAAAGGTATTTCCTAGTTTACCGCTATTAGAAATCCATTTCCTATTTTGTGGTGAAATGGAATTAGAAGTGCTAGAAGCTCCTAGAGACGACTGCCCCGCTTGTGGGTTTATATATTCTGATTTCTCCAACCTTAAatctcatatttttaatactcaTAACGATTTCTTTAAAGAGTTTGACTTGATTtcgaaaatttctaattatatatGTGTTACATGCGGATTCCTGTTTGATAGCATGCAAAACTTAGAAATACATAGACGGGAGCACAATGTCTCTCGAAGGACAGACAAAACATTTAGAGATAATATAAcgataaagataaaaaataattacctGTCAAATACGGCTTCAAAATCTGAGACATCTAGTTCAATAAATAAGGAGGAAAAAGAAAGTCCTGCACAAGCCAAATATTCGGACAAACCCGTAGAACCTTCATATAGGTGTGATCAATGTGCAGCAttatttaagagttataaagaCTATATCAAACATAAAATTAGCCATGATGATTCGGGCGAACAAGAAGAAAATGCGGAAAATGAAAGTCCTATGCATGTTCAATATTCAGACAAATCCACTGGACCTTCATATAGGTGTGATCAATGTGCAAAAttatttaagagttataaagaATATATCAAACATAAAATTAGCCATGATAATTCGGGCGAACAAGTAGAAAATGAGGAAAAAGAAAGTCCTACGCATGTTCAATATTCAGACAGATCCATTGGACCTTCATATAGGTGTGATCAATGTTCAAAGttatttaaaagttataaagAATATATCAAACATAAAATTAGCCATGATGATTCGGGCGAACAAGTAGAAAATGAGGAAAAAGAAAGTCCTACGCATGTTCAATATTCAGCCAAATCCATTGGACCTTCATATAGGTGTGATCAGTGTTCAAAGttatttaagagttataaagaATATATCAAACATAAAATTAGCCATGATGATTCGGGCGAACTAGAAGACAATGACGAAAAAGAAAGTCCTCTACAGGCCCAATATTTAGACAAATCCATTGAACCTTCATATAGGTGTGATCAATGTGCAATAttatttaagagttataaagaATATATCAAACACAAAATTAGCCATGATGATTTGAGCGATAAAGAAGAAAATTATCTGTCTAATTTGATAGACCCATCTTCGGTTAATTTAGACTTGCCGTCGTCAGCTAATTTAGGGTTTTTAAAAGAGGACGAATCAAAGAAGAGACGAAAACTGCATAATTCGGATTTAGAAAACattaagaaaagaaaatttTGCTGTCAAATTTGCGAGCAAGACTTTTGTAATCCATCAAGTCTTGGCGAGCATGATTGTCCCGGTCCGTTCTGA
Protein Sequence: MDNPGEIMRFCRLCLVKDQVNIPIFEEQGDIRQIFLKISSCLPVKVSREDKLPKKICDGCSNKLDLLYEFWNTSANAEKTLLSWLGQAGVKDVDQTITAVAQQIAKPSEPQVKEETPEDGHAAVQNTDHLGISNSAVLDDSSAKDETEEPPPKRARRTAAVKAQINLTPDSEEEDDDLDTAEPMTKIEDESDESDNDDKDPSYVDVPGTSADDQPGPSGVGKDGAEAPSTKEDSSNPSVKLLQSLYCNKCGASFQNLELLYSHIINPGSSDHTFRCASCNCNVGNTIINLTDHIRKHCDEEVVAEKERTIAESQSTKPRYFCEKCGKAFFVFQDLFKHASVHVDDLICCTQCSVKNSSLRQIILHFRQHCVTYDNKTPNKLPIITDKTSEETVANTNKPKSKTILQNDSSIENSNSDNIIKSKQIIFCEFCRLNFFCFLRYFNHRSLVHSQDLIYCKSDCGEKFTGMFFWREHYKSRHTYNELRKDIKNCKMNKNDRITIYCEVCGEGFANAYNRQLHIISLHDNRYLICAVCQHPYSNNYAFAAHLSTRHRIFNKQTFKCFECTKPIYFLHVYLYHVGTHKYNAESKHYPRCRICKVKIRSQIAHVRHMNKHMSFAYFYCFFCNNSYKFSEELQLHMKSKHGSLYSDYNRFLSIPCNKNRYECPICKESIPEMYIYQHWRLGHPESVSKKKAILDDFAKSSFCKSYKELQKVSGAIGSQLLTGAYLIKETNLEVSQILGTTSNIGGSDTKSDKSDNSTILPASADEVHKSDEDSTESNLDSSVPSLTETKTLNKESVSSEIKVDSNLSLNSTDSSKLQENTDISSSKVNEGNMALNQGISNNEHNKQKTTLNLETTSKLTLNNQSKNTDSKTSSNLSISQTKECSSKSNSKETETESSNNEHNKQKTNLNLETTSKLTLNNQSKNTDSKTKELSISQTKEYSSNSNSKETQAKSKPTLNVLPLTDTSKSSSKENKTKSLKKQELSQPLSATFSSAALPRNIPTFPVPEPPANTYYYPSQENVNSYGYNATSNIQYQNYYHQSSYGNQNELWQSTMAAQPVWQGSIIAETYVQQPTEYFHLNQQPIMPSQPVNFSQQPIIPPQKINYECKGCKKVFPSLPLLEIHFLFCGEMELEVLEAPRDDCPACGFIYSDFSNLKSHIFNTHNDFFKEFDLISKISNYICVTCGFLFDSMQNLEIHRREHNVSRRTDKTFRDNITIKIKNNYLSNTASKSETSSSINKEEKESPAQAKYSDKPVEPSYRCDQCAALFKSYKDYIKHKISHDDSGEQEENAENESPMHVQYSDKSTGPSYRCDQCAKLFKSYKEYIKHKISHDNSGEQVENEEKESPTHVQYSDRSIGPSYRCDQCSKLFKSYKEYIKHKISHDDSGEQVENEEKESPTHVQYSAKSIGPSYRCDQCSKLFKSYKEYIKHKISHDDSGELEDNDEKESPLQAQYLDKSIEPSYRCDQCAILFKSYKEYIKHKISHDDLSDKEENYLSNLIDPSSVNLDLPSSANLGFLKEDESKKRRKLHNSDLENIKKRKFCCQICEQDFCNPSSLGEHDCPGPF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -